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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8ZL1 | 60215 | 2025-04-29 | 2024-05-17 | 2.86 | 3.89 | 2.90 | 3.5 | 0.004 | 0.65 | 0.0 | 0.04 | 12.59 | 0.00 | 2.214 | 8.00 | 0.22 | 2.5 | 97.5 | 0.0 | 1.27 | 0.71 | 0.87 | 2.81 | 3.5 | 0.002 | 0.57 | 0.0 | 0.04 | 14.10 | 0.00 | 2.498 | 7.42 | 0.88 | 2.3 | 97.7 | 0.0 | 1.54 | 0.32 | 0.71 | 0.87 | 2.63 | 8466 | 1078 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8ZL1 | 60215 | 2025-03-12 | 2024-05-17 | 2.86 | 3.89 | 2.90 | 3.5 | 0.004 | 0.65 | 0.0 | 0.04 | 12.59 | 0.00 | 2.214 | 8.00 | 0.22 | 2.5 | 97.5 | 0.0 | 1.27 | 0.71 | 0.87 | 2.81 | 3.5 | 0.002 | 0.57 | 0.0 | 0.04 | 14.10 | 0.00 | 2.498 | 7.42 | 0.88 | 2.3 | 97.7 | 0.0 | 1.54 | 0.32 | 0.71 | 0.87 | 2.63 | 8466 | 1078 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8ZKS | 60207 | 2025-06-14 | 2024-05-17 | 3.21 | 3.57 | 3.36 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 14.04 | 0.00 | 1.942 | 6.94 | 0.14 | 9.1 | 90.6 | 0.3 | -0.33 | 0.60 | 0.79 | 2.20 | 3.5 | 0.005 | 0.63 | 0.0 | 0.04 | 15.38 | 0.00 | 2.534 | 5.13 | 2.38 | 9.3 | 90.5 | 0.1 | -0.24 | 0.35 | 0.62 | 0.83 | 2.12 | 16170 | 2172 | 6 | 0 | 7 | 0 | 0 | logfile |
✔ | 9FDY | 50333 | 2025-05-10 | 2024-05-17 | 3.4 | 3.71 | 3.59 | 3.8 | 0.004 | 0.54 | 0.0 | 0.04 | 10.68 | 0.00 | 2.162 | 9.26 | 2.56 | 4.6 | 95.4 | 0.0 | -0.50 | 0.69 | 0.76 | 2.62 | 3.8 | 0.003 | 0.65 | 0.0 | 0.05 | 14.40 | 0.00 | 2.350 | 9.76 | 4.84 | 5.8 | 94.2 | 0.0 | -0.87 | 1.16 | 0.68 | 0.76 | 2.07 | 6119 | 770 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 9FDY | 50333 | 2025-04-27 | 2024-05-17 | 3.4 | 3.71 | 3.59 | 3.8 | 0.004 | 0.54 | 0.0 | 0.04 | 10.68 | 0.00 | 2.162 | 9.26 | 2.56 | 4.6 | 95.4 | 0.0 | -0.50 | 0.69 | 0.76 | 2.62 | 3.8 | 0.004 | 0.69 | 0.0 | 0.05 | 14.51 | 0.00 | 2.403 | 10.42 | 5.26 | 6.2 | 93.8 | 0.0 | -1.05 | 1.15 | 0.68 | 0.77 | 2.44 | 6119 | 770 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 8ZKW | 60210 | 2025-02-12 | 2024-05-17 | 2.77 | 3.79 | 3.01 | 3.5 | 0.005 | 0.68 | 0.0 | 0.05 | 12.73 | 0.00 | 2.101 | 8.14 | 0.00 | 2.5 | 97.5 | 0.0 | 0.83 | 0.67 | 0.88 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8504 | 1080 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8ZL4 | 60218 | 2025-03-13 | 2024-05-17 | 3.65 | 4.23 | 3.93 | 4.1 | 0.006 | 0.82 | 0.0 | 0.05 | 13.18 | 0.01 | 2.252 | 8.44 | 0.00 | 1.8 | 98.2 | 0.0 | 0.78 | 0.64 | 0.87 | 2.37 | 4.1 | 0.005 | 1.13 | 1.0 | 0.04 | 15.64 | 0.01 | 2.239 | 10.95 | 2.94 | 1.9 | 98.1 | 0.0 | 1.28 | 0.95 | 0.63 | 0.86 | 1.40 | 8596 | 1082 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 9FDZ | 50334 | 2025-06-20 | 2024-05-17 | 2.86 | 3.47 | 2.83 | 3.3 | 0.003 | 0.49 | 0.0 | 0.04 | 14.32 | 0.00 | 2.192 | 3.10 | 0.59 | 1.2 | 98.8 | 0.0 | 1.33 | 0.77 | 0.89 | 3.37 | 3.3 | 0.003 | 0.54 | 0.0 | 0.04 | 15.15 | 0.00 | 2.502 | 4.31 | 1.33 | 1.2 | 98.8 | 0.0 | 2.03 | 0.28 | 0.78 | 0.89 | 2.66 | 23736 | 3120 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ZKW | 60210 | 2025-04-29 | 2024-05-17 | 2.77 | 3.79 | 3.00 | 3.5 | 0.005 | 0.69 | 0.0 | 0.05 | 12.73 | 0.00 | 2.101 | 8.14 | 0.00 | 2.5 | 97.5 | 0.0 | 0.83 | 0.67 | 0.88 | 2.97 | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 14.50 | 0.00 | 2.495 | 8.14 | 0.55 | 2.2 | 97.8 | 0.0 | 1.72 | 0.36 | 0.66 | 0.86 | 2.22 | 8504 | 1080 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8ZKW | 60210 | 2025-03-13 | 2024-05-17 | 2.77 | 3.79 | 3.00 | 3.5 | 0.005 | 0.68 | 0.0 | 0.05 | 12.73 | 0.00 | 2.101 | 8.14 | 0.00 | 2.5 | 97.5 | 0.0 | 0.83 | 0.67 | 0.88 | 2.97 | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 14.50 | 0.00 | 2.495 | 8.14 | 0.55 | 2.2 | 97.8 | 0.0 | 1.72 | 0.36 | 0.66 | 0.86 | 2.22 | 8504 | 1080 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8ZL4 | 60218 | 2025-04-29 | 2024-05-17 | 3.65 | 4.23 | 3.93 | 4.1 | 0.006 | 0.82 | 0.0 | 0.05 | 13.18 | 0.01 | 2.252 | 8.44 | 0.00 | 1.8 | 98.2 | 0.0 | 0.78 | 0.64 | 0.87 | 2.37 | 4.1 | 0.005 | 1.13 | 1.0 | 0.04 | 15.64 | 0.01 | 2.239 | 10.95 | 2.94 | 1.9 | 98.1 | 0.0 | 1.28 | 0.95 | 0.63 | 0.86 | 1.40 | 8596 | 1082 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 9FDY | 50333 | 2025-06-05 | 2024-05-17 | 3.4 | 3.71 | 3.59 | 3.8 | 0.004 | 0.54 | 0.0 | 0.04 | 10.68 | 0.00 | 2.162 | 9.26 | 2.56 | 4.6 | 95.4 | 0.0 | -0.50 | 0.69 | 0.76 | 2.62 | 3.8 | 0.004 | 0.69 | 0.0 | 0.05 | 14.51 | 0.00 | 2.403 | 10.42 | 5.26 | 6.2 | 93.8 | 0.0 | -1.05 | 1.15 | 0.68 | 0.77 | 2.44 | 6119 | 770 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 9FE1 | 50336 | 2025-06-07 | 2024-05-17 | 3.1 | 3.31 | 3.09 | 3.2 | 0.005 | 0.83 | 0.0 | 0.05 | 15.08 | 0.01 | 2.042 | 10.17 | 0.22 | 4.5 | 95.5 | 0.0 | -1.63 | 0.77 | 0.70 | 2.76 | 3.2 | 0.003 | 0.65 | 0.0 | 0.04 | 16.43 | 0.00 | 2.333 | 6.27 | 2.00 | 3.6 | 96.4 | 0.0 | 0.27 | 2.33 | 0.78 | 0.73 | 2.82 | 8458 | 539 | 4 | 0 | 0 | 0 | 4163 | logfile |
✔ | 8ZL4 | 60218 | 2025-05-12 | 2024-05-17 | 3.65 | 4.23 | 3.93 | 4.1 | 0.006 | 0.82 | 0.0 | 0.05 | 13.18 | 0.01 | 2.252 | 8.44 | 0.00 | 1.8 | 98.2 | 0.0 | 0.78 | 0.64 | 0.87 | 2.37 | 4.1 | 0.003 | 0.77 | 0.0 | 0.04 | 15.42 | 0.01 | 2.449 | 9.30 | 2.83 | 1.4 | 98.6 | 0.0 | 1.28 | 0.95 | 0.63 | 0.86 | 1.40 | 8596 | 1082 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 8ZL4 | 60218 | 2025-06-07 | 2024-05-17 | 3.65 | 4.23 | 3.93 | 4.1 | 0.006 | 0.82 | 0.0 | 0.05 | 13.18 | 0.01 | 2.252 | 8.44 | 0.00 | 1.8 | 98.2 | 0.0 | 0.78 | 0.64 | 0.87 | 2.37 | 4.1 | 0.005 | 1.13 | 1.0 | 0.04 | 15.64 | 0.01 | 2.239 | 10.95 | 2.94 | 1.9 | 98.1 | 0.0 | 1.28 | 0.95 | 0.63 | 0.86 | 1.40 | 8596 | 1082 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 8ZKW | 60210 | 2025-05-11 | 2024-05-17 | 2.77 | 3.79 | 3.00 | 3.5 | 0.005 | 0.69 | 0.0 | 0.05 | 12.73 | 0.00 | 2.101 | 8.14 | 0.00 | 2.5 | 97.5 | 0.0 | 0.83 | 0.67 | 0.88 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8504 | 1080 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8ZL1 | 60215 | 2025-02-12 | 2024-05-17 | 2.86 | 3.89 | 2.90 | 3.5 | 0.004 | 0.65 | 0.0 | 0.04 | 12.59 | 0.00 | 2.214 | 8.00 | 0.22 | 2.5 | 97.5 | 0.0 | 1.27 | 0.71 | 0.87 | 2.81 | 3.5 | 0.002 | 0.57 | 0.0 | 0.04 | 14.08 | 0.00 | 2.481 | 6.96 | 1.10 | 2.2 | 97.8 | 0.0 | 1.57 | 0.32 | 0.72 | 0.87 | 2.63 | 8466 | 1078 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8ZKU | 60209 | 2025-06-14 | 2024-05-17 | 3.34 | 3.60 | 3.39 | 3.6 | 0.008 | 0.66 | 0.0 | 0.04 | 14.28 | 0.00 | 2.228 | 5.90 | 0.00 | 7.5 | 92.4 | 0.1 | -0.67 | 0.66 | 0.82 | 2.48 | 3.6 | 0.002 | 0.57 | 0.0 | 0.04 | 15.02 | 0.00 | 2.406 | 4.67 | 1.91 | 6.2 | 93.8 | 0.0 | 0.44 | 0.35 | 0.65 | 0.83 | 1.60 | 16174 | 2171 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 8ZL4 | 60218 | 2025-02-13 | 2024-05-17 | 3.65 | 4.23 | 3.94 | 4.1 | 0.006 | 0.82 | 0.0 | 0.05 | 13.18 | 0.01 | 2.252 | 8.44 | 0.00 | 1.8 | 98.2 | 0.0 | 0.78 | 0.64 | 0.87 | 2.37 | 4.1 | 0.003 | 0.77 | 0.0 | 0.04 | 15.42 | 0.01 | 2.449 | 9.30 | 2.83 | 1.4 | 98.6 | 0.0 | 1.28 | 0.95 | 0.63 | 0.86 | 1.40 | 8596 | 1082 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 8ZKW | 60210 | 2025-06-07 | 2024-05-17 | 2.77 | 3.79 | 3.00 | 3.5 | 0.005 | 0.69 | 0.0 | 0.05 | 12.73 | 0.00 | 2.101 | 8.14 | 0.00 | 2.5 | 97.5 | 0.0 | 0.83 | 0.67 | 0.88 | 2.97 | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 14.50 | 0.00 | 2.495 | 8.14 | 0.55 | 2.2 | 97.8 | 0.0 | 1.72 | 0.36 | 0.66 | 0.86 | 2.22 | 8504 | 1080 | 4 | 0 | 4 | 0 | 0 | logfile |