Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YHD	39287	2024-09-29	2024-02-28	2.93	3.18	3.06	3.2	0.008	1.26	0.0	0.07	18.37	0.01	2.251	9.28	2.02	4.1	95.9	0.0	-2.64	0.69	0.80	2.34	3.2	0.005	0.69	0.0	0.05	19.29	0.00	2.320	10.14	2.92	3.5	96.5	0.0	0.04	0.73	0.68	0.82	2.52	23859	2838	25	88	11	0	0	logfile
✔	8YHD	39287	2025-01-25	2024-02-28	2.93	3.18	3.06	3.2	0.008	1.26	0.0	0.07	18.37	0.01	2.251	9.28	2.02	4.1	95.9	0.0	-2.64	0.69	0.80	2.34	3.2	0.003	0.64	0.0	0.04	19.34	0.00	2.382	10.21	3.22	2.8	97.2	0.0	0.16	0.72	0.67	0.81	2.41	23859	2838	25	88	11	0	0	logfile
✔	8YHo	39290	2025-01-14	2024-02-28	2.8	3.60	2.93	3.4	0.018	1.52	4.0	0.08	12.89	0.01	2.200	13.51	1.83	8.2	91.3	0.5	-4.81	0.77	0.81	3.05	3.4	0.004	0.83	0.0	0.04	15.18	0.00	2.490	11.58	2.12	7.1	92.9	0.0	-0.35	1.34	0.75	0.79	2.10	6206	759	3	0	0	0	0	logfile
✔	8YHo	39290	2024-12-27	2024-02-28	2.8	3.60	2.93	3.4	0.018	1.52	4.0	0.08	12.89	0.01	2.200	13.51	1.83	8.2	91.3	0.5	-4.81	0.77	0.81	3.05	3.4	0.004	0.90	0.0	0.05	15.23	0.00	2.503	12.55	2.26	7.1	92.9	0.0	-0.47	1.36	0.75	0.79	2.35	6206	759	3	0	0	0	0	logfile
✔	8YHo	39290	2025-02-11	2024-02-28	2.8	3.60	2.93	3.4	0.018	1.52	4.0	0.08	12.89	0.01	2.200	13.51	1.83	8.2	91.3	0.5	-4.81	0.77	0.81	3.05	3.4	0.004	0.83	0.0	0.04	15.18	0.00	2.490	11.58	2.12	7.1	92.9	0.0	-0.35	1.34	0.75	0.79	2.10	6206	759	3	0	0	0	0	logfile
✔	8YHo	39290	2025-04-27	2024-02-28	2.8	3.60	2.94	3.4	0.018	1.52	4.0	0.08	12.89	0.01	2.200	13.51	1.83	8.2	91.3	0.5	-4.81	0.77	0.81	3.05	3.4	0.004	0.85	0.0	0.04	15.06	0.00	2.552	11.74	1.97	7.1	92.9	0.0	-0.42	1.34	0.76	0.79	2.28	6206	759	3	0	0	0	0	logfile
✘	9AU8	43874	2025-04-27	2024-02-28	3.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5393	641	4	15	2	0	0	logfile
✔	8YHE	39288	2025-01-24	2024-02-28	3.07	3.30	3.14	3.3	0.008	1.12	1.0	0.06	18.57	0.01	2.133	9.90	2.27	5.0	94.9	0.0	-2.65	0.69	0.81	2.09	3.3	0.004	0.61	0.0	0.04	18.59	0.00	2.259	9.43	4.24	3.3	96.7	0.0	0.11	1.05	0.70	0.82	2.55	21183	2561	22	76	9	0	0	logfile
✔	9AU2	43842	2025-01-25	2024-02-28	3.1	3.34	3.11	3.3	0.005	0.63	2.0	0.05	9.79	0.01	2.030	3.71	1.16	3.0	96.9	0.1	-0.91	0.63	0.73	5.07	3.3	0.002	0.51	0.0	0.04	12.10	0.00	2.428	2.57	2.27	1.9	98.1	0.0	0.43	0.36	0.78	0.86	3.88	23745	3419	20	0	49	0	0	logfile
✔	8YHE	39288	2024-11-20	2024-02-28	3.07	3.30	3.14	3.3	0.008	1.12	1.0	0.06	18.57	0.01	2.133	9.90	2.27	5.0	94.9	0.0	-2.65	0.69	0.81	2.09	3.3	0.003	0.75	1.0	0.04	18.65	0.00	2.153	10.07	4.34	3.4	96.6	0.0	0.05	1.06	0.68	0.80	2.61	21183	2561	22	76	9	0	0	logfile
✔	8YHE	39288	2024-09-29	2024-02-28	3.07	3.30	3.14	3.3	0.008	1.12	1.0	0.06	18.57	0.01	2.133	9.90	2.27	5.0	94.9	0.0	-2.65	0.69	0.81	2.09	3.3	0.003	0.75	1.0	0.04	18.65	0.00	2.153	10.07	4.34	3.4	96.6	0.0	0.05	1.06	0.68	0.80	2.61	21183	2561	22	76	9	0	0	logfile
✘	9ATP	43832	2024-12-30	2024-02-27	3.5	4.08	3.59	3.8	0.005	0.73	0.0	0.05	15.18	0.01	2.043	15.12	0.21	6.2	93.5	0.3	-1.38	0.75	0.76	2.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13004	1636	6	0	0	0	0	logfile
✔	8YH9	39285	2025-01-23	2024-02-27	3.35	3.60	3.50	3.6	0.004	0.76	0.0	0.05	20.73	0.01	2.260	7.92	1.65	8.3	91.7	0.0	-2.96	0.66	0.65	1.07	3.6	0.004	0.67	0.0	0.04	20.62	0.00	2.455	12.36	6.06	8.7	91.3	0.0	-2.44	0.93	0.67	0.73	1.07	21153	2450	10	60	0	0	0	logfile
✔	8YH9	39285	2024-08-07	2024-02-27	3.35	3.60	3.50	3.6	0.004	0.76	0.0	0.05	20.73	0.01	2.260	7.92	1.65	8.3	91.7	0.0	-2.96	0.66	0.65	1.07	3.6	0.003	0.64	0.0	0.04	20.58	0.00	2.460	11.37	6.61	8.4	91.6	0.0	-2.24	0.93	0.67	0.72	1.03	21153	2450	10	60	0	0	0	logfile
✔	8YH9	39285	2024-11-20	2024-02-27	3.35	3.60	3.50	3.6	0.004	0.76	0.0	0.05	20.73	0.01	2.260	7.92	1.65	8.3	91.7	0.0	-2.96	0.66	0.65	1.07	3.6	0.003	0.64	0.0	0.04	20.58	0.00	2.460	11.37	6.61	8.4	91.6	0.0	-2.24	0.93	0.67	0.72	1.03	21153	2450	10	60	0	0	0	logfile
✔	8YH9	39285	2024-09-29	2024-02-27	3.35	3.60	3.50	3.6	0.004	0.76	0.0	0.05	20.73	0.01	2.260	7.92	1.65	8.3	91.7	0.0	-2.96	0.66	0.65	1.07	3.6	0.003	0.64	0.0	0.04	20.58	0.00	2.460	11.37	6.61	8.4	91.6	0.0	-2.24	0.93	0.67	0.72	1.03	21153	2450	10	60	0	0	0	logfile
✔	8YH2	39279	2025-01-15	2024-02-27	3.27	4.08	—	3.8	0.004	0.63	0.0	0.04	13.42	0.00	1.993	10.72	0.00	4.0	95.9	0.1	-0.01	0.66	0.68	1.10	3.8	0.003	0.81	0.0	0.05	16.04	0.00	2.460	14.87	2.52	4.1	95.9	0.1	-0.08	1.56	0.65	0.71	0.57	8690	1103	6	0	1	0	0	logfile
✔	8YH2	39279	2025-02-13	2024-02-27	3.27	4.08	—	3.8	0.004	0.63	0.0	0.04	13.42	0.00	1.993	10.72	0.00	4.0	95.9	0.1	-0.01	0.66	0.68	1.10	3.8	0.003	0.81	0.0	0.05	16.04	0.00	2.460	14.87	2.52	4.1	95.9	0.1	-0.08	1.56	0.65	0.71	0.57	8690	1103	6	0	1	0	0	logfile
✔	8YH2	39279	2025-03-13	2024-02-27	3.27	4.08	—	3.8	0.004	0.63	0.0	0.04	13.42	0.00	1.993	10.72	0.00	4.0	95.9	0.1	-0.01	0.66	0.68	1.10	3.8	0.003	0.80	0.0	0.05	16.28	0.00	2.548	14.99	3.36	4.3	95.6	0.1	0.04	1.57	0.65	0.70	0.71	8690	1103	6	0	1	0	0	logfile
✔	8YH2	39279	2025-04-29	2024-02-27	3.27	4.08	—	3.8	0.004	0.64	0.0	0.04	13.42	0.00	1.993	10.72	0.00	4.0	95.9	0.1	-0.01	0.66	0.68	1.10	3.8	0.004	0.81	0.0	0.05	16.28	0.00	2.543	16.43	3.67	4.8	95.1	0.1	-0.05	1.56	0.65	0.71	0.83	8690	1103	6	0	1	0	0	logfile

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