Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9GC3	51228	2025-01-20	2024-08-01	2.46	3.18	2.52	2.9	0.013	1.54	3.0	0.11	18.38	0.01	2.311	1.26	0.00	2.2	97.8	0.0	-0.68	0.92	0.93	5.50	2.9	0.003	0.55	0.0	0.04	18.10	0.00	2.510	4.15	0.73	1.3	98.7	0.0	0.75	1.01	0.88	0.90	4.15	15046	1673	5	80	0	0	0	logfile
✔	9GC3	51228	2024-12-31	2024-08-01	2.46	3.18	2.52	2.9	0.013	1.54	3.0	0.11	18.38	0.01	2.311	1.26	0.00	2.2	97.8	0.0	-0.68	0.92	0.93	5.50	2.9	0.002	0.54	0.0	0.04	18.12	0.00	2.496	4.69	0.60	1.4	98.6	0.0	0.89	1.02	0.88	0.90	3.89	15046	1673	5	80	0	0	0	logfile
✔	9iZW	61044	2025-01-20	2024-08-01	3.12	3.31	3.20	3.3	0.003	0.53	1.0	0.04	14.73	0.00	1.895	3.90	1.34	4.6	95.4	0.0	-3.87	0.61	0.62	1.15	3.3	0.003	0.69	0.0	0.04	16.65	0.00	2.466	9.40	3.65	6.2	93.8	0.0	-1.24	0.69	0.72	0.81	1.53	15196	1996	4	0	0	0	0	logfile
✔	9iZW	61044	2024-12-31	2024-08-01	3.12	3.31	3.20	3.3	0.003	0.53	1.0	0.04	14.73	0.00	1.895	3.90	1.34	4.6	95.4	0.0	-3.87	0.61	0.62	1.15	3.3	0.007	0.82	0.0	0.05	16.85	0.01	2.481	11.76	4.26	8.1	91.9	0.0	-1.59	0.72	0.73	0.81	1.27	15196	1996	4	0	0	0	0	logfile
✔	9CXJ	45993	2025-01-17	2024-07-31	3.1	3.43	3.24	3.5	0.004	0.75	0.0	0.05	14.80	0.01	1.970	5.94	1.42	3.0	97.0	0.0	-0.11	0.65	0.76	3.21	3.5	0.003	0.61	0.0	0.04	16.52	0.00	2.011	9.14	1.42	3.3	96.7	0.0	1.54	0.35	0.64	0.75	2.07	10227	1237	6	0	4	0	0	logfile
✔	9CXJ	45993	2025-02-14	2024-07-31	3.1	3.43	3.24	3.5	0.004	0.75	0.0	0.05	14.80	0.01	1.970	5.94	1.42	3.0	97.0	0.0	-0.11	0.65	0.76	3.21	3.5	0.003	0.61	0.0	0.04	16.52	0.00	2.011	9.14	1.42	3.3	96.7	0.0	1.54	0.35	0.64	0.75	2.07	10227	1237	6	0	4	0	0	logfile
✔	9CX9	45982	2025-02-11	2024-07-31	3.34	3.58	3.32	3.5	0.003	0.67	0.0	0.04	14.88	0.00	2.285	7.59	0.21	2.7	97.3	0.0	-0.81	0.77	0.77	2.41	3.5	0.004	0.67	0.0	0.05	16.33	0.00	2.564	6.49	6.29	4.0	96.0	0.0	-0.94	0.48	0.80	0.81	2.17	4631	609	5	0	0	0	0	logfile
✔	9CX9	45982	2025-03-06	2024-07-31	3.34	3.58	3.32	3.5	0.003	0.67	0.0	0.04	14.88	0.00	2.285	7.59	0.21	2.7	97.3	0.0	-0.81	0.77	0.77	2.41	3.5	0.003	0.62	0.0	0.04	16.29	0.00	2.576	5.83	5.45	3.1	96.9	0.0	-0.54	1.46	0.80	0.80	1.97	4631	609	5	0	0	0	0	logfile
✔	9CX9	45982	2025-01-14	2024-07-31	3.34	3.58	3.32	3.5	0.003	0.67	0.0	0.04	14.88	0.00	2.285	7.59	0.21	2.7	97.3	0.0	-0.81	0.77	0.77	2.41	3.5	0.004	0.67	0.0	0.05	16.33	0.00	2.564	6.49	6.29	4.0	96.0	0.0	-0.94	0.48	0.80	0.81	2.17	4631	609	5	0	0	0	0	logfile
✔	9CXJ	45993	2024-12-29	2024-07-31	3.1	3.43	3.24	3.5	0.004	0.75	0.0	0.05	14.80	0.01	1.970	5.94	1.42	3.0	97.0	0.0	-0.11	0.65	0.76	3.21	3.5	0.003	0.62	0.0	0.04	16.51	0.00	2.011	9.18	1.51	3.2	96.8	0.0	1.54	0.36	0.65	0.75	2.07	10227	1237	6	0	4	0	0	logfile
✔	9CX9	45982	2024-12-27	2024-07-31	3.34	3.58	3.32	3.5	0.003	0.67	0.0	0.04	14.88	0.00	2.285	7.59	0.21	2.7	97.3	0.0	-0.81	0.77	0.77	2.41	3.5	0.003	0.64	0.0	0.04	16.26	0.00	2.560	5.61	5.45	3.8	96.2	0.0	-0.85	0.50	0.80	0.80	2.17	4631	609	5	0	0	0	0	logfile
✔	9CXF	45988	2025-02-11	2024-07-31	3.02	3.58	3.03	3.3	0.006	0.68	0.0	0.04	25.40	0.00	1.874	7.88	0.00	0.0	0.0	0.0	—	0.92	0.90	—	3.3	0.008	0.72	0.0	0.04	24.51	0.00	1.792	5.56	0.00	0.0	0.0	0.0	—	0.38	0.93	0.92	—	4318	0	2	200	22	0	0	logfile
✔	9iYX	61003	2025-03-05	2024-07-31	3.6	3.14	2.42	3.2	0.004	0.78	1.0	0.04	12.81	0.01	2.132	11.46	0.40	2.7	97.3	0.0	1.26	0.44	0.67	2.43	3.2	0.003	0.66	0.0	0.04	14.47	0.01	2.620	6.72	3.56	1.5	98.5	0.0	3.10	1.63	0.45	0.71	2.35	2626	351	4	0	2	0	0	logfile
✔	9CXF	45988	2025-03-06	2024-07-31	3.02	3.58	3.03	3.3	0.006	0.68	0.0	0.04	25.40	0.00	1.874	7.88	0.00	0.0	0.0	0.0	—	0.92	0.90	—	3.3	0.008	0.72	0.0	0.04	24.51	0.00	1.799	6.03	0.00	0.0	0.0	0.0	—	0.37	0.93	0.92	—	4318	0	2	200	22	0	0	logfile
✔	9iYX	61003	2025-02-10	2024-07-31	3.6	3.14	3.12	3.2	0.004	0.78	1.0	0.04	12.81	0.01	2.132	11.46	0.40	2.7	97.3	0.0	1.26	0.44	0.67	2.43	3.2	0.003	0.65	0.0	0.04	14.54	0.01	2.589	6.72	2.77	2.1	97.9	0.0	3.24	1.63	0.45	0.70	2.06	2626	351	4	0	2	0	0	logfile
✔	9iY8	60990	2025-02-13	2024-07-30	3.01	2.61	3.03	3.1	0.003	0.79	0.0	0.05	16.61	0.01	2.102	16.87	0.30	4.4	95.6	0.0	0.01	0.82	0.83	1.96	3.1	0.004	0.75	0.0	0.05	17.08	0.00	2.482	12.46	4.92	4.7	95.3	0.0	0.06	0.41	0.82	0.83	1.93	9014	1141	5	0	0	0	0	logfile
✔	9iY8	60990	2025-01-16	2024-07-30	3.01	2.61	3.03	3.1	0.003	0.79	0.0	0.05	16.61	0.01	2.102	16.87	0.30	4.4	95.6	0.0	0.01	0.82	0.83	1.96	3.1	0.004	0.75	0.0	0.05	17.08	0.00	2.482	12.46	4.92	4.7	95.3	0.0	0.06	0.41	0.82	0.83	1.93	9014	1141	5	0	0	0	0	logfile
✘	9iY8	60990	2025-03-13	2024-07-30	3.01	2.61	3.04	3.1	0.003	0.79	0.0	0.05	16.61	0.01	2.102	16.87	0.30	4.4	95.6	0.0	0.01	0.82	0.83	1.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9014	1141	5	0	0	0	0	logfile
✔	9CX3	45977	2025-02-11	2024-07-30	3.47	3.60	3.43	3.5	0.005	0.71	0.0	0.04	15.76	0.00	2.201	11.22	0.16	5.2	94.8	0.0	-1.54	0.72	0.67	1.75	3.5	0.004	0.72	0.0	0.04	17.09	0.00	2.497	13.02	5.91	6.5	93.5	0.0	-1.84	0.57	0.75	0.71	2.02	5626	720	6	0	0	0	0	logfile
✘	9CX6	45979	2024-12-27	2024-07-30	3.2	3.35	3.13	3.5	0.009	1.46	0.0	0.07	12.63	0.01	0.182	28.34	0.00	5.0	95.0	0.0	-4.11	0.47	0.62	4.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49250	7200	200	0	0	250	0	logfile

• ← previous
• Page 22 of 5115
• next →