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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 9BCo | 44432 | 2025-04-27 | 2024-04-09 | 4.4 | 4.70 | 4.37 | 4.6 | 0.016 | 0.88 | 1.0 | 0.05 | 12.78 | 0.01 | 2.105 | 8.36 | 0.00 | 7.3 | 92.7 | 0.0 | -1.99 | 0.75 | 0.73 | — | 4.6 | 0.002 | 0.60 | 0.0 | 0.04 | 11.01 | 0.00 | 2.490 | 2.56 | 0.00 | 3.3 | 96.7 | 0.0 | 1.02 | 0.70 | 0.75 | 0.74 | — | 6164 | 1038 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 9BCo | 44432 | 2025-05-10 | 2024-04-09 | 4.4 | 4.70 | 4.37 | 4.6 | 0.016 | 0.88 | 1.0 | 0.05 | 12.78 | 0.01 | 2.105 | 8.36 | 0.00 | 7.3 | 92.7 | 0.0 | -1.99 | 0.75 | 0.73 | — | 4.6 | 0.002 | 0.63 | 0.0 | 0.04 | 11.23 | 0.00 | 2.338 | 2.85 | 0.00 | 4.7 | 95.3 | 0.0 | 0.21 | 0.71 | 0.76 | 0.75 | — | 6164 | 1038 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 9BCo | 44432 | 2025-02-11 | 2024-04-09 | 4.4 | 4.70 | 4.38 | 4.6 | 0.005 | 0.88 | 1.0 | 0.05 | 12.78 | 0.01 | 2.105 | 8.36 | 0.00 | 7.3 | 92.7 | 0.0 | -1.99 | 0.75 | 0.73 | — | 4.6 | 0.003 | 0.62 | 0.0 | 0.04 | 11.36 | 0.00 | 2.399 | 3.15 | 0.00 | 5.2 | 94.8 | 0.0 | -0.07 | 0.71 | 0.76 | 0.76 | — | 6164 | 1038 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 9BCo | 44432 | 2025-01-14 | 2024-04-09 | 4.4 | 4.70 | 4.38 | 4.6 | 0.005 | 0.88 | 1.0 | 0.05 | 12.78 | 0.01 | 2.105 | 8.36 | 0.00 | 7.3 | 92.7 | 0.0 | -1.99 | 0.75 | 0.73 | — | 4.6 | 0.003 | 0.62 | 0.0 | 0.04 | 11.36 | 0.00 | 2.399 | 3.15 | 0.00 | 5.2 | 94.8 | 0.0 | -0.07 | 0.71 | 0.76 | 0.76 | — | 6164 | 1038 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 9EYK | 50056 | 2025-04-27 | 2024-04-09 | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6639 | 891 | 5 | 8 | 0 | 0 | 0 | logfile |
✘ | 9EYK | 50056 | 2025-03-11 | 2024-04-09 | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6639 | 891 | 5 | 8 | 0 | 0 | 0 | logfile |
✘ | 9EYK | 50056 | 2025-02-11 | 2024-04-09 | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6639 | 891 | 5 | 8 | 0 | 0 | 0 | logfile |
✘ | 9EYK | 50056 | 2025-01-14 | 2024-04-09 | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6639 | 891 | 5 | 8 | 0 | 0 | 0 | logfile |
✔ | 9BCo | 44432 | 2025-03-11 | 2024-04-09 | 4.4 | 4.70 | 4.37 | 4.6 | 0.005 | 0.88 | 1.0 | 0.05 | 12.78 | 0.01 | 2.105 | 8.36 | 0.00 | 7.3 | 92.7 | 0.0 | -1.99 | 0.75 | 0.73 | — | 4.6 | 0.002 | 0.60 | 0.0 | 0.04 | 11.01 | 0.00 | 2.490 | 2.56 | 0.00 | 3.3 | 96.7 | 0.0 | 1.02 | 0.70 | 0.75 | 0.74 | — | 6164 | 1038 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 9EY0 | 50050 | 2025-01-21 | 2024-04-09 | 2.78 | 2.62 | — | 3.0 | 0.005 | 0.56 | 1.0 | 0.04 | 17.62 | 0.00 | 1.995 | 4.46 | 0.18 | 2.7 | 97.3 | 0.0 | 1.57 | 0.91 | 0.89 | 3.36 | 3.0 | 0.003 | 0.63 | 0.0 | 0.04 | 18.15 | 0.00 | 1.996 | 6.25 | 1.41 | 2.2 | 97.8 | 0.0 | 1.27 | 1.09 | 0.89 | 0.88 | 3.03 | 16691 | 2008 | 10 | 65 | 4 | 0 | 0 | logfile |
✘ | 9EYK | 50056 | 2024-11-14 | 2024-04-09 | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6639 | 891 | 5 | 8 | 0 | 0 | 0 | logfile |
✘ | 9EYK | 50056 | 2024-10-10 | 2024-04-09 | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6639 | 891 | 5 | 8 | 0 | 0 | 0 | logfile |
✘ | 9EYi | 50054 | 2025-05-12 | 2024-04-09 | 2.75 | 3.13 | 2.84 | 3.0 | 0.005 | 0.63 | 0.0 | 0.04 | 15.67 | 0.00 | 2.211 | 10.26 | 2.15 | 3.3 | 96.7 | 0.0 | 0.12 | 0.82 | 0.81 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9453 | 1248 | 5 | 8 | 0 | 0 | 0 | logfile |
✔ | 9BCQ | 44434 | 2025-01-19 | 2024-04-09 | 3.1 | 3.30 | 3.12 | 3.3 | 0.006 | 0.71 | 1.0 | 0.07 | 14.49 | 0.01 | 2.199 | 3.67 | 0.00 | 3.7 | 96.3 | 0.0 | -1.15 | 0.73 | 0.85 | 4.38 | 3.3 | 0.003 | 0.59 | 0.0 | 0.06 | 14.66 | 0.00 | 2.423 | 3.30 | 0.72 | 3.2 | 96.8 | 0.0 | -0.17 | 0.32 | 0.70 | 0.84 | 3.87 | 13401 | 874 | 9 | 0 | 12 | 0 | 6466 | logfile |
✘ | 9EYK | 50056 | 2024-12-27 | 2024-04-09 | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6639 | 891 | 5 | 8 | 0 | 0 | 0 | logfile |
✔ | 9BCQ | 44434 | 2024-12-30 | 2024-04-09 | 3.1 | 3.30 | 3.12 | 3.3 | 0.006 | 0.71 | 1.0 | 0.07 | 14.49 | 0.01 | 2.199 | 3.67 | 0.00 | 3.7 | 96.3 | 0.0 | -1.15 | 0.73 | 0.85 | 4.38 | 3.3 | 0.003 | 0.58 | 0.0 | 0.06 | 14.61 | 0.00 | 2.418 | 3.23 | 0.72 | 3.2 | 96.8 | 0.0 | -0.23 | 0.31 | 0.70 | 0.84 | 3.76 | 13401 | 874 | 9 | 0 | 12 | 0 | 6466 | logfile |
✔ | 9BCQ | 44434 | 2025-05-15 | 2024-04-09 | 3.1 | 3.30 | 3.12 | 3.3 | 0.006 | 0.76 | 1.0 | 0.07 | 14.49 | 0.01 | 2.199 | 3.67 | 0.00 | 3.7 | 96.3 | 0.0 | -1.15 | 0.73 | 0.85 | 4.38 | 3.3 | 0.003 | 0.61 | 0.0 | 0.06 | 14.44 | 0.00 | 2.341 | 3.23 | 0.43 | 3.2 | 96.8 | 0.0 | -0.14 | 0.33 | 0.71 | 0.84 | 3.74 | 13401 | 874 | 9 | 0 | 12 | 0 | 6466 | logfile |
✔ | 9BCL | 44429 | 2025-04-27 | 2024-04-09 | 2.9 | 3.20 | 3.02 | 3.2 | 0.005 | 0.84 | 1.0 | 0.07 | 14.78 | 0.00 | 2.149 | 3.19 | 0.31 | 3.3 | 96.7 | 0.0 | -1.41 | 0.67 | 0.82 | 4.31 | 3.2 | 0.003 | 0.70 | 0.0 | 0.04 | 15.01 | 0.00 | 2.507 | 3.72 | 1.39 | 2.1 | 97.9 | 0.0 | 0.18 | 0.36 | 0.70 | 0.85 | 3.77 | 6719 | 850 | 8 | 0 | 18 | 0 | 0 | logfile |
✔ | 9BCL | 44429 | 2024-12-27 | 2024-04-09 | 2.9 | 3.20 | 3.03 | 3.2 | 0.005 | 0.76 | 1.0 | 0.07 | 14.78 | 0.00 | 2.149 | 3.19 | 0.31 | 3.3 | 96.7 | 0.0 | -1.41 | 0.67 | 0.82 | 4.31 | 3.2 | 0.003 | 0.63 | 0.0 | 0.04 | 14.95 | 0.00 | 2.531 | 4.25 | 1.08 | 2.5 | 97.5 | 0.0 | 0.54 | 0.38 | 0.69 | 0.85 | 3.62 | 6719 | 850 | 8 | 0 | 18 | 0 | 0 | logfile |
✔ | 8Z0F | 39703 | 2024-11-19 | 2024-04-09 | 3.27 | 3.50 | 3.29 | 3.5 | 0.007 | 1.07 | 0.0 | 0.04 | 19.33 | 0.00 | 1.980 | 12.96 | 0.51 | 10.9 | 89.1 | 0.0 | -2.49 | 0.59 | 0.75 | 0.86 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 19.04 | 0.00 | 2.257 | 8.55 | 5.03 | 10.0 | 90.0 | 0.0 | -2.22 | 0.30 | 0.61 | 0.76 | 0.72 | 18066 | 1098 | 3 | 0 | 2 | 0 | 9062 | logfile |