Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YH3	39280	2025-04-29	2024-02-27	3.4	4.05	—	3.7	0.010	1.22	0.0	0.08	13.86	0.02	2.121	9.79	1.15	4.5	95.3	0.2	-0.72	0.61	0.58	0.55	3.8	0.004	0.83	0.0	0.05	16.18	0.00	2.420	13.83	2.20	4.8	95.2	0.0	0.17	1.86	0.67	0.74	0.79	8691	1103	6	0	1	0	0	logfile
✔	8YH3	39280	2024-11-15	2024-02-27	3.4	4.05	—	3.7	0.010	1.22	0.0	0.08	13.86	0.02	2.121	9.79	1.15	4.5	95.3	0.2	-0.72	0.61	0.58	0.55	3.8	0.004	0.86	0.0	0.05	16.16	0.00	2.397	15.56	2.41	4.1	95.9	0.0	0.09	1.88	0.67	0.73	0.82	8691	1103	6	0	1	0	0	logfile
✔	8YH3	39280	2025-03-13	2024-02-27	3.4	4.05	—	3.7	0.010	1.22	0.0	0.08	13.86	0.02	2.121	9.79	1.15	4.5	95.3	0.2	-0.72	0.61	0.58	0.55	3.8	0.004	0.83	0.0	0.05	16.20	0.00	2.419	14.40	2.10	4.8	95.2	0.0	0.17	1.86	0.67	0.74	0.88	8691	1103	6	0	1	0	0	logfile
✔	8YH3	39280	2024-12-28	2024-02-27	3.4	4.05	—	3.7	0.010	1.22	0.0	0.08	13.86	0.02	2.121	9.79	1.15	4.5	95.3	0.2	-0.72	0.61	0.58	0.55	3.8	0.004	0.86	0.0	0.05	16.16	0.00	2.397	15.56	2.41	4.1	95.9	0.0	0.09	1.88	0.67	0.73	0.82	8691	1103	6	0	1	0	0	logfile
✔	8YH2	39279	2024-12-28	2024-02-27	3.27	4.08	—	3.8	0.004	0.63	0.0	0.04	13.42	0.00	1.993	10.72	0.00	4.0	95.9	0.1	-0.01	0.66	0.68	1.10	3.8	0.004	0.87	0.0	0.05	16.01	0.00	2.464	15.62	2.52	4.0	95.9	0.1	-0.16	1.57	0.66	0.72	0.86	8690	1103	6	0	1	0	0	logfile
✔	8YH2	39279	2025-01-15	2024-02-27	3.27	4.08	—	3.8	0.004	0.63	0.0	0.04	13.42	0.00	1.993	10.72	0.00	4.0	95.9	0.1	-0.01	0.66	0.68	1.10	3.8	0.003	0.81	0.0	0.05	16.04	0.00	2.460	14.87	2.52	4.1	95.9	0.1	-0.08	1.56	0.65	0.71	0.57	8690	1103	6	0	1	0	0	logfile
✔	8YH2	39279	2024-11-15	2024-02-27	3.27	4.08	—	3.8	0.004	0.63	0.0	0.04	13.42	0.00	1.993	10.72	0.00	4.0	95.9	0.1	-0.01	0.66	0.68	1.10	3.8	0.004	0.87	0.0	0.05	16.01	0.00	2.464	15.62	2.52	4.0	95.9	0.1	-0.16	1.57	0.66	0.72	0.86	8690	1103	6	0	1	0	0	logfile
✔	8YH2	39279	2025-04-29	2024-02-27	3.27	4.08	—	3.8	0.004	0.64	0.0	0.04	13.42	0.00	1.993	10.72	0.00	4.0	95.9	0.1	-0.01	0.66	0.68	1.10	3.8	0.004	0.81	0.0	0.05	16.28	0.00	2.543	16.43	3.67	4.8	95.1	0.1	-0.05	1.56	0.65	0.71	0.83	8690	1103	6	0	1	0	0	logfile
✔	8YH2	39279	2025-03-13	2024-02-27	3.27	4.08	—	3.8	0.004	0.63	0.0	0.04	13.42	0.00	1.993	10.72	0.00	4.0	95.9	0.1	-0.01	0.66	0.68	1.10	3.8	0.003	0.80	0.0	0.05	16.28	0.00	2.548	14.99	3.36	4.3	95.6	0.1	0.04	1.57	0.65	0.70	0.71	8690	1103	6	0	1	0	0	logfile
✔	8YH2	39279	2025-02-13	2024-02-27	3.27	4.08	—	3.8	0.004	0.63	0.0	0.04	13.42	0.00	1.993	10.72	0.00	4.0	95.9	0.1	-0.01	0.66	0.68	1.10	3.8	0.003	0.81	0.0	0.05	16.04	0.00	2.460	14.87	2.52	4.1	95.9	0.1	-0.08	1.56	0.65	0.71	0.57	8690	1103	6	0	1	0	0	logfile
✔	8YHA	39286	2024-08-10	2024-02-27	3.4	3.38	3.36	3.3	0.003	0.62	0.0	0.04	20.62	0.00	1.865	6.67	0.54	6.1	93.9	0.0	-0.99	0.82	0.84	2.19	3.3	0.007	0.71	0.0	0.05	20.63	0.00	2.361	7.26	3.85	8.6	91.4	0.0	-0.64	0.28	0.83	0.87	2.44	28503	3333	14	108	2	0	0	logfile
✔	8YH5	39281	2024-12-28	2024-02-27	3.66	4.08	—	3.8	0.004	0.72	0.0	0.04	13.33	0.02	2.102	11.23	0.10	6.5	93.5	0.0	-1.50	0.62	0.62	0.60	3.8	0.003	0.85	0.0	0.05	16.47	0.00	2.347	13.71	2.94	4.7	95.2	0.1	-0.25	1.15	0.64	0.67	0.35	8695	1103	6	0	1	0	0	logfile
✔	8YH5	39281	2025-04-29	2024-02-27	3.66	4.08	—	3.8	0.004	0.72	0.0	0.04	13.33	0.02	2.102	11.23	0.10	6.5	93.5	0.0	-1.50	0.62	0.62	0.60	3.8	0.004	0.86	0.0	0.05	16.28	0.00	2.510	13.36	2.94	4.4	95.5	0.1	-0.17	1.16	0.64	0.67	0.35	8695	1103	6	0	1	0	0	logfile
✔	8YH5	39281	2025-03-13	2024-02-27	3.66	4.08	—	3.8	0.004	0.72	0.0	0.04	13.33	0.02	2.102	11.23	0.10	6.5	93.5	0.0	-1.50	0.62	0.62	0.60	3.8	0.004	0.85	0.0	0.05	16.38	0.00	2.411	13.82	3.88	4.8	95.1	0.1	-0.38	1.15	0.64	0.67	0.35	8695	1103	6	0	1	0	0	logfile
✔	8YH5	39281	2025-02-13	2024-02-27	3.66	4.08	—	3.8	0.004	0.72	0.0	0.04	13.33	0.02	2.102	11.23	0.10	6.5	93.5	0.0	-1.50	0.62	0.62	0.60	3.8	0.004	1.09	0.0	0.05	16.27	0.00	1.852	15.78	2.94	4.5	95.4	0.1	-0.18	1.16	0.64	0.66	0.35	8695	1103	6	0	1	0	0	logfile
✔	8YH5	39281	2025-01-15	2024-02-27	3.66	4.08	—	3.8	0.004	0.72	0.0	0.04	13.33	0.02	2.102	11.23	0.10	6.5	93.5	0.0	-1.50	0.62	0.62	0.60	3.8	0.004	1.09	0.0	0.05	16.27	0.00	1.852	15.78	2.94	4.5	95.4	0.1	-0.18	1.16	0.64	0.66	0.35	8695	1103	6	0	1	0	0	logfile
✔	8YH5	39281	2024-11-15	2024-02-27	3.66	4.08	—	3.8	0.004	0.72	0.0	0.04	13.33	0.02	2.102	11.23	0.10	6.5	93.5	0.0	-1.50	0.62	0.62	0.60	3.8	0.003	0.85	0.0	0.05	16.47	0.00	2.347	13.71	2.94	4.7	95.2	0.1	-0.25	1.15	0.64	0.67	0.35	8695	1103	6	0	1	0	0	logfile
✔	8S5W	19752	2025-04-27	2024-02-26	3.05	3.14	2.97	3.1	0.012	0.84	0.0	0.04	17.30	0.00	2.313	5.50	0.24	6.5	93.5	0.0	-1.89	0.56	0.80	2.00	3.1	0.003	0.58	0.0	0.04	17.90	0.00	2.583	5.12	4.51	4.0	96.0	0.0	0.96	0.89	0.60	0.85	2.72	4009	502	3	0	1	0	0	logfile
✔	8S5W	19752	2025-01-13	2024-02-26	3.05	3.14	2.97	3.1	0.012	0.84	0.0	0.04	17.30	0.00	2.313	5.50	0.24	6.5	93.5	0.0	-1.89	0.56	0.80	2.00	3.1	0.004	0.62	0.0	0.04	18.02	0.00	2.584	5.37	6.18	4.0	96.0	0.0	0.69	0.89	0.61	0.85	2.62	4009	502	3	0	1	0	0	logfile
✔	8S5W	19752	2024-10-09	2024-02-26	3.05	3.14	2.97	3.1	0.012	0.84	0.0	0.04	17.30	0.00	2.313	5.50	0.24	6.5	93.5	0.0	-1.89	0.56	0.80	2.00	3.1	0.004	0.61	0.0	0.04	17.93	0.00	2.583	6.25	5.94	4.0	96.0	0.0	0.91	0.88	0.61	0.85	2.52	4009	502	3	0	1	0	0	logfile

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