Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9B9J	44386	2025-05-18	2024-04-02	2.6	3.11	2.64	3.0	0.005	0.74	0.0	0.05	19.52	0.00	2.049	2.70	0.34	2.9	97.0	0.1	0.15	0.70	0.77	4.32	3.0	0.003	0.58	0.0	0.04	14.65	0.00	2.037	2.40	0.90	2.6	97.3	0.1	0.26	0.61	0.73	0.81	3.90	16334	1055	16	0	39	0	7817	logfile
✔	9B8Y	44362	2024-08-10	2024-04-01	3.2	3.89	3.17	3.7	0.004	0.47	0.0	0.03	10.41	0.00	2.120	4.02	0.54	4.3	95.7	0.0	2.44	0.68	0.86	2.86	3.7	0.004	0.59	0.0	0.04	13.63	0.00	2.263	5.99	2.72	3.3	96.7	0.0	2.15	0.55	0.67	0.87	2.25	29980	3912	8	0	12	0	0	logfile
✔	9B8X	44361	2025-03-12	2024-04-01	3.0	3.73	2.92	3.4	0.002	0.42	0.0	0.03	9.22	0.00	2.325	4.87	0.40	2.8	97.2	0.0	2.41	0.60	0.86	2.62	3.4	0.002	0.51	0.0	0.04	12.25	0.00	2.390	3.94	1.35	2.9	97.1	0.0	2.44	0.51	0.61	0.87	2.66	7564	993	2	0	2	0	0	logfile
✔	9B8X	44361	2025-01-14	2024-04-01	3.0	3.73	2.92	3.4	0.002	0.42	0.0	0.03	9.22	0.00	2.325	4.87	0.40	2.8	97.2	0.0	2.41	0.60	0.86	2.62	3.4	0.002	0.49	0.0	0.04	12.43	0.00	2.355	3.94	0.54	2.8	97.2	0.0	2.47	0.98	0.61	0.88	2.70	7564	993	2	0	2	0	0	logfile
✔	9B8X	44361	2025-02-12	2024-04-01	3.0	3.73	2.92	3.4	0.002	0.42	0.0	0.03	9.22	0.00	2.325	4.87	0.40	2.8	97.2	0.0	2.41	0.60	0.86	2.62	3.4	0.002	0.49	0.0	0.04	12.43	0.00	2.355	3.94	0.54	2.8	97.2	0.0	2.47	0.98	0.61	0.88	2.70	7564	993	2	0	2	0	0	logfile
✔	9B8X	44361	2025-05-11	2024-04-01	3.0	3.73	2.92	3.4	0.002	0.42	0.0	0.03	9.22	0.00	2.325	4.87	0.40	2.8	97.2	0.0	2.41	0.60	0.86	2.62	3.4	0.002	0.50	0.0	0.04	12.43	0.00	2.344	4.00	0.67	2.8	97.2	0.0	2.47	0.98	0.61	0.88	2.87	7564	993	2	0	2	0	0	logfile
✔	9B8X	44361	2024-08-03	2024-04-01	3.0	3.73	2.92	3.4	0.002	0.42	0.0	0.03	9.22	0.00	2.325	4.87	0.40	2.8	97.2	0.0	2.41	0.60	0.86	2.62	3.4	0.003	0.51	0.0	0.04	12.14	0.00	2.308	4.14	1.75	2.8	97.2	0.0	2.43	0.51	0.61	0.88	2.90	7564	993	2	0	2	0	0	logfile
✔	9B8X	44361	2024-09-24	2024-04-01	3.0	3.73	2.92	3.4	0.002	0.42	0.0	0.03	9.22	0.00	2.325	4.87	0.40	2.8	97.2	0.0	2.41	0.60	0.86	2.62	3.4	0.003	0.51	0.0	0.04	12.14	0.00	2.308	4.14	1.75	2.8	97.2	0.0	2.43	0.51	0.61	0.88	2.90	7564	993	2	0	2	0	0	logfile
✔	9B8X	44361	2024-10-10	2024-04-01	3.0	3.73	2.92	3.4	0.002	0.42	0.0	0.03	9.22	0.00	2.325	4.87	0.40	2.8	97.2	0.0	2.41	0.60	0.86	2.62	3.4	0.003	0.51	0.0	0.04	12.14	0.00	2.308	4.14	1.75	2.8	97.2	0.0	2.43	0.51	0.61	0.88	2.90	7564	993	2	0	2	0	0	logfile
✔	9B8X	44361	2024-11-14	2024-04-01	3.0	3.73	2.92	3.4	0.002	0.42	0.0	0.03	9.22	0.00	2.325	4.87	0.40	2.8	97.2	0.0	2.41	0.60	0.86	2.62	3.4	0.003	0.51	0.0	0.04	12.14	0.00	2.308	4.14	1.75	2.8	97.2	0.0	2.43	0.51	0.61	0.88	2.90	7564	993	2	0	2	0	0	logfile
✔	9B8X	44361	2024-12-28	2024-04-01	3.0	3.73	2.92	3.4	0.002	0.42	0.0	0.03	9.22	0.00	2.325	4.87	0.40	2.8	97.2	0.0	2.41	0.60	0.86	2.62	3.4	0.003	0.51	0.0	0.04	12.14	0.00	2.308	4.14	1.75	2.8	97.2	0.0	2.43	0.51	0.61	0.88	2.90	7564	993	2	0	2	0	0	logfile
✔	9B8Y	44362	2025-05-27	2024-04-01	3.2	3.89	3.18	3.7	0.004	0.47	0.0	0.03	10.41	0.00	2.120	4.02	0.54	4.3	95.7	0.0	2.44	0.68	0.86	2.86	3.7	0.003	0.57	0.0	0.04	13.67	0.00	2.365	5.79	2.51	3.0	97.0	0.0	2.17	0.55	0.67	0.87	1.99	29980	3912	8	0	12	0	0	logfile
✔	9B8Z	44363	2025-01-14	2024-04-01	3.4	4.06	3.36	3.8	0.004	0.48	0.0	0.03	10.45	0.00	2.014	3.84	0.54	4.2	95.8	0.0	2.44	0.70	0.85	2.22	3.8	0.003	0.56	0.0	0.04	14.36	0.00	2.355	5.66	2.03	2.6	97.4	0.0	2.18	0.53	0.69	0.87	1.92	7509	978	2	0	3	0	0	logfile
✔	8YWW	39645	2024-08-11	2024-04-01	2.7	2.97	2.79	2.9	0.016	1.90	92.0	0.08	13.25	0.01	0.602	15.05	0.77	4.5	95.3	0.2	-0.39	0.65	0.66	1.46	2.9	0.006	0.75	0.0	0.05	15.40	0.01	2.531	7.63	2.39	5.9	94.1	0.0	-0.84	0.81	0.74	0.83	2.39	31649	4177	8	0	0	0	0	logfile
✔	8YWW	39645	2025-05-29	2024-04-01	2.7	2.97	2.79	2.9	0.016	1.90	92.0	0.08	13.25	0.01	0.602	15.05	0.77	4.5	95.3	0.2	-0.39	0.65	0.66	1.46	2.9	0.003	0.63	0.0	0.04	15.17	0.00	2.229	6.58	1.92	4.5	95.4	0.0	-0.27	0.77	0.74	0.84	2.24	31649	4177	8	0	0	0	0	logfile
✔	8YWX	39646	2024-10-09	2024-04-01	3.4	3.68	3.38	3.6	0.009	2.56	46.0	0.13	13.58	0.01	1.898	22.95	2.43	3.4	96.6	0.0	-1.55	0.67	0.73	2.13	3.6	0.003	0.79	0.0	0.05	14.88	0.00	2.244	8.78	3.37	5.2	94.8	0.0	-1.53	2.30	0.68	0.76	1.27	4803	623	3	0	0	0	0	logfile
✔	8YWX	39646	2025-04-27	2024-04-01	3.4	3.68	3.37	3.6	0.009	2.56	46.0	0.13	13.58	0.01	1.898	22.95	2.43	3.4	96.6	0.0	-1.55	0.67	0.73	2.13	3.5	0.007	0.96	0.0	0.05	15.10	0.01	2.308	15.97	4.12	8.1	91.9	0.0	-1.77	2.31	0.69	0.76	1.86	4803	623	3	0	0	0	0	logfile
✔	8YWX	39646	2024-09-23	2024-04-01	3.4	3.68	3.38	3.6	0.009	2.56	46.0	0.13	13.58	0.01	1.898	22.95	2.43	3.4	96.6	0.0	-1.55	0.67	0.73	2.13	3.6	0.003	0.79	0.0	0.05	14.88	0.00	2.244	8.78	3.37	5.2	94.8	0.0	-1.53	2.30	0.68	0.76	1.27	4803	623	3	0	0	0	0	logfile
✔	8YWX	39646	2025-02-11	2024-04-01	3.4	3.68	3.38	3.6	0.009	2.56	46.0	0.13	13.58	0.01	1.898	22.95	2.43	3.4	96.6	0.0	-1.55	0.67	0.73	2.13	3.6	0.005	0.84	0.0	0.05	15.08	0.01	2.295	9.84	3.18	6.0	94.0	0.0	-1.52	0.74	0.69	0.76	1.30	4803	623	3	0	0	0	0	logfile
✔	9B92	44366	2025-05-28	2024-04-01	3.5	4.35	3.55	3.9	0.012	0.73	0.0	0.04	11.40	0.00	2.118	5.81	0.65	4.8	95.2	0.0	2.12	0.70	0.86	2.16	3.9	0.003	0.56	0.0	0.03	13.47	0.00	2.262	5.50	0.89	3.4	96.5	0.1	2.56	0.41	0.70	0.86	1.63	29948	3960	8	0	4	0	0	logfile

• ← previous
• Page 234 of 5030
• next →