Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XN3	38496	2024-11-16	2023-12-28	2.64	2.38	2.65	2.4	0.003	0.57	0.0	0.04	13.62	0.00	2.067	9.37	0.00	3.4	96.6	0.0	1.25	0.62	0.63	2.51	2.1	0.003	0.73	0.0	0.05	16.82	0.01	2.349	11.65	2.73	4.1	95.9	0.0	0.60	0.72	0.73	0.72	2.46	6505	791	3	0	7	0	0	logfile
✔	8XN3	38496	2025-02-14	2023-12-28	2.64	2.38	2.65	2.4	0.003	0.57	0.0	0.04	13.62	0.00	2.067	9.37	0.00	3.4	96.6	0.0	1.25	0.62	0.63	2.51	2.1	0.004	0.79	0.0	0.05	17.06	0.01	2.276	12.99	2.45	3.7	96.3	0.0	0.24	1.12	0.73	0.72	2.51	6505	791	3	0	7	0	0	logfile
✔	8XN3	38496	2024-08-04	2023-12-28	2.64	2.38	2.65	2.4	0.003	0.57	0.0	0.04	13.62	0.00	2.067	9.37	0.00	3.4	96.6	0.0	1.25	0.62	0.63	2.51	2.1	0.003	0.73	0.0	0.05	16.82	0.01	2.349	11.65	2.73	4.1	95.9	0.0	0.60	0.72	0.73	0.72	2.46	6505	791	3	0	7	0	0	logfile
✔	8XN3	38496	2024-12-29	2023-12-28	2.64	2.38	2.65	2.4	0.003	0.57	0.0	0.04	13.62	0.00	2.067	9.37	0.00	3.4	96.6	0.0	1.25	0.62	0.63	2.51	2.1	0.003	0.73	0.0	0.05	16.82	0.01	2.349	11.65	2.73	4.1	95.9	0.0	0.60	0.72	0.73	0.72	2.46	6505	791	3	0	7	0	0	logfile
✔	8XN3	38496	2024-09-25	2023-12-28	2.64	2.38	2.65	2.4	0.003	0.57	0.0	0.04	13.62	0.00	2.067	9.37	0.00	3.4	96.6	0.0	1.25	0.62	0.63	2.51	2.1	0.003	0.73	0.0	0.05	16.82	0.01	2.349	11.65	2.73	4.1	95.9	0.0	0.60	0.72	0.73	0.72	2.46	6505	791	3	0	7	0	0	logfile
✔	8XMT	38488	2024-09-30	2023-12-28	3.31	2.36	3.26	2.2	0.004	0.64	1.0	0.05	13.24	0.01	2.202	10.21	0.11	4.0	95.7	0.3	0.46	0.68	0.72	2.73	2.1	0.005	0.65	0.0	0.05	15.46	0.00	2.514	7.70	3.07	4.9	95.0	0.0	0.07	0.63	0.78	0.80	2.85	24217	3045	6	0	27	0	0	logfile
✔	8XMT	38488	2025-01-26	2023-12-28	3.31	2.36	3.26	2.2	0.004	0.64	1.0	0.05	13.24	0.01	2.202	10.21	0.11	4.0	95.7	0.3	0.46	0.68	0.72	2.73	2.1	0.004	0.67	0.0	0.05	15.62	0.00	2.430	8.06	3.41	4.5	95.4	0.0	0.10	0.66	0.78	0.80	2.61	24217	3045	6	0	27	0	0	logfile
✔	8XMT	38488	2024-08-09	2023-12-28	3.31	2.36	3.26	2.2	0.004	0.64	1.0	0.05	13.24	0.01	2.202	10.21	0.11	4.0	95.7	0.3	0.46	0.68	0.72	2.73	2.1	0.005	0.65	0.0	0.05	15.46	0.00	2.514	7.70	3.07	4.9	95.0	0.0	0.07	0.63	0.78	0.80	2.85	24217	3045	6	0	27	0	0	logfile
✔	8VGK	43203	2025-01-23	2023-12-27	2.4	3.44	2.61	3.1	0.005	1.04	0.0	0.06	13.84	0.01	2.099	3.12	0.65	7.0	92.3	0.6	-1.00	0.84	0.81	4.28	3.2	0.004	0.83	0.0	0.05	15.21	0.01	2.431	7.02	1.09	5.4	94.6	0.0	0.32	0.85	0.81	0.86	3.08	20567	2672	20	0	0	135	0	logfile
✘	8VGK	43203	2024-11-20	2023-12-27	2.4	3.44	2.61	3.1	0.005	1.04	0.0	0.06	13.84	0.01	2.099	3.12	0.65	7.0	92.3	0.6	-1.00	0.84	0.81	4.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20567	2672	20	0	0	135	0	logfile
✔	8VGH	43200	2025-01-23	2023-12-27	2.9	4.11	3.07	3.9	0.011	0.94	0.0	0.05	12.79	0.01	2.239	6.69	0.13	7.1	92.4	0.5	-1.33	0.82	0.82	3.38	3.9	0.004	0.82	0.0	0.05	15.47	0.01	2.407	9.28	2.27	3.8	96.2	0.0	0.10	0.77	0.82	0.82	2.70	20472	2668	12	0	0	0	0	logfile
✔	8XMK	38480	2025-01-18	2023-12-27	3.03	3.24	3.07	3.2	0.004	0.53	0.0	0.04	13.98	0.00	2.186	10.49	0.16	3.7	96.3	0.0	-0.74	0.70	0.81	2.70	3.2	0.003	0.55	0.0	0.04	16.05	0.00	2.206	8.20	2.83	4.1	95.9	0.0	-0.56	1.19	0.70	0.83	2.09	11815	1553	6	0	23	0	0	logfile
✔	8VGJ	43202	2025-01-23	2023-12-27	2.5	3.57	2.62	3.1	0.011	1.20	0.0	0.08	13.49	0.01	2.128	3.54	1.57	6.2	93.5	0.3	-1.25	0.86	0.82	3.93	3.2	0.004	0.82	0.0	0.05	15.35	0.01	2.144	6.53	1.57	3.4	96.6	0.0	0.21	0.72	0.83	0.87	3.04	20579	2672	21	0	0	99	0	logfile
✘	8VGJ	43202	2024-11-20	2023-12-27	2.5	3.57	2.62	3.1	0.011	1.20	0.0	0.08	13.49	0.01	2.128	3.54	1.57	6.2	93.5	0.3	-1.25	0.86	0.82	3.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20579	2672	21	0	0	99	0	logfile
✔	8VGH	43200	2024-11-20	2023-12-27	2.9	4.11	3.07	3.9	0.011	0.94	0.0	0.05	12.79	0.01	2.239	6.69	0.13	7.1	92.4	0.5	-1.33	0.82	0.82	3.38	3.9	0.004	0.81	0.0	0.05	15.64	0.01	2.409	8.17	2.40	3.9	96.1	0.0	0.11	0.77	0.82	0.82	2.75	20472	2668	12	0	0	0	0	logfile
✔	8XMF	38475	2024-12-27	2023-12-27	3.64	4.12	3.77	4.0	0.005	0.69	0.0	0.04	19.98	0.00	1.982	9.07	0.00	5.3	94.7	0.0	1.35	0.59	0.80	2.19	4.0	0.003	0.67	0.0	0.04	16.64	0.00	1.879	9.47	6.44	4.5	95.5	0.0	1.32	0.54	0.59	0.81	1.81	4929	636	4	0	13	0	0	logfile
✔	8XMF	38475	2024-11-14	2023-12-27	3.64	4.12	3.77	4.0	0.005	0.69	0.0	0.04	19.98	0.00	1.982	9.07	0.00	5.3	94.7	0.0	1.35	0.59	0.80	2.19	4.0	0.003	0.67	0.0	0.04	16.64	0.00	1.879	9.47	6.44	4.5	95.5	0.0	1.32	0.54	0.59	0.81	1.81	4929	636	4	0	13	0	0	logfile
✔	8XMF	38475	2025-03-06	2023-12-27	3.64	4.12	3.75	4.0	0.005	0.69	0.0	0.04	19.98	0.00	1.982	9.07	0.00	5.3	94.7	0.0	1.35	0.59	0.80	2.19	4.1	0.003	0.64	0.0	0.04	16.25	0.00	1.878	8.97	4.83	4.2	95.8	0.0	1.42	0.54	0.59	0.80	1.65	4929	636	4	0	13	0	0	logfile
✔	8XMF	38475	2025-02-11	2023-12-27	3.64	4.12	3.77	4.0	0.005	0.69	0.0	0.04	19.98	0.00	1.982	9.07	0.00	5.3	94.7	0.0	1.35	0.59	0.80	2.19	4.1	0.003	0.65	0.0	0.04	16.42	0.00	1.864	8.87	5.63	4.5	95.5	0.0	1.32	0.54	0.59	0.81	1.93	4929	636	4	0	13	0	0	logfile
✔	8XMF	38475	2025-01-14	2023-12-27	3.64	4.12	3.77	4.0	0.005	0.69	0.0	0.04	19.98	0.00	1.982	9.07	0.00	5.3	94.7	0.0	1.35	0.59	0.80	2.19	4.1	0.003	0.65	0.0	0.04	16.42	0.00	1.864	8.87	5.63	4.5	95.5	0.0	1.32	0.54	0.59	0.81	1.93	4929	636	4	0	13	0	0	logfile

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