Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YMQ	39403	2025-02-14	2024-03-09	2.6	3.01	2.76	2.9	0.011	1.48	10.0	0.11	23.72	0.01	1.982	10.17	32.64	8.2	89.6	2.2	-3.41	0.55	0.71	2.94	3.0	0.004	0.70	0.0	0.04	18.52	0.01	2.455	7.16	4.32	6.1	93.9	0.0	0.75	1.21	0.61	0.87	2.83	10524	1302	4	0	4	0	0	logfile
✔	8YMQ	39403	2025-01-17	2024-03-09	2.6	3.01	2.76	2.9	0.011	1.48	10.0	0.11	23.72	0.01	1.982	10.17	32.64	8.2	89.6	2.2	-3.41	0.55	0.71	2.94	3.0	0.004	0.70	0.0	0.04	18.52	0.01	2.455	7.16	4.32	6.1	93.9	0.0	0.75	1.21	0.61	0.87	2.83	10524	1302	4	0	4	0	0	logfile
✘	8YMP	39402	2024-11-15	2024-03-09	2.6	3.14	2.77	3.2	0.008	1.42	12.0	0.09	25.41	0.01	2.057	14.00	37.57	10.6	87.2	2.2	-3.93	0.45	0.50	1.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9570	1184	4	0	2	0	0	logfile
✘	8YMP	39402	2024-10-11	2024-03-09	2.6	3.14	2.77	3.2	0.008	1.42	12.0	0.09	25.41	0.01	2.057	14.00	37.57	10.6	87.2	2.2	-3.93	0.45	0.50	1.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9570	1184	4	0	2	0	0	logfile
✔	8YMP	39402	2025-05-13	2024-03-09	2.6	3.14	2.77	3.2	0.008	1.42	12.0	0.09	25.41	0.01	2.057	14.00	37.57	10.6	87.2	2.2	-3.93	0.45	0.50	1.19	3.1	0.003	0.85	0.0	0.04	18.76	0.01	2.438	12.55	3.23	6.1	93.9	0.0	0.26	1.91	0.52	0.72	2.83	9570	1184	4	0	2	0	0	logfile
✘	8YMP	39402	2025-04-30	2024-03-09	2.6	3.14	2.77	3.2	0.008	1.42	12.0	0.09	25.41	0.01	2.057	14.00	37.57	10.6	87.2	2.2	-3.93	0.45	0.50	1.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9570	1184	4	0	2	0	0	logfile
✘	8YMP	39402	2024-12-29	2024-03-09	2.6	3.14	2.77	3.2	0.008	1.42	12.0	0.09	25.41	0.01	2.057	14.00	37.57	10.6	87.2	2.2	-3.93	0.45	0.50	1.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9570	1184	4	0	2	0	0	logfile
✔	8YMQ	39403	2024-12-29	2024-03-09	2.6	3.01	2.76	2.9	0.011	1.48	10.0	0.11	23.72	0.01	1.982	10.17	32.64	8.2	89.6	2.2	-3.41	0.55	0.71	2.94	3.0	0.003	0.70	0.0	0.04	18.78	0.01	2.473	7.30	5.04	6.5	93.4	0.2	0.68	1.21	0.60	0.87	2.94	10524	1302	4	0	4	0	0	logfile
✔	8YMQ	39403	2024-11-16	2024-03-09	2.6	3.01	2.76	2.9	0.011	1.48	10.0	0.11	23.72	0.01	1.982	10.17	32.64	8.2	89.6	2.2	-3.41	0.55	0.71	2.94	3.0	0.003	0.70	0.0	0.04	18.78	0.01	2.473	7.30	5.04	6.5	93.4	0.2	0.68	1.21	0.60	0.87	2.94	10524	1302	4	0	4	0	0	logfile
✔	8YMK	39396	2025-01-13	2024-03-09	3.7	3.92	1.91	7.8	0.005	1.22	1.0	0.06	11.93	0.01	2.212	16.34	0.00	14.1	84.4	1.6	-1.73	0.59	0.62	-0.11	7.7	0.003	1.14	0.0	0.06	13.52	0.00	2.612	12.37	4.51	11.2	87.5	1.3	-1.02	1.84	0.60	0.63	-0.04	2744	452	2	0	0	0	0	logfile
✔	8YMK	39396	2024-09-23	2024-03-09	3.7	3.92	1.91	7.8	0.005	1.22	1.0	0.06	11.93	0.01	2.212	16.34	0.00	14.1	84.4	1.6	-1.73	0.59	0.62	-0.11	7.7	0.003	1.05	0.0	0.06	13.71	0.00	2.609	12.81	5.26	12.3	86.4	1.3	-1.08	1.86	0.59	0.60	-0.50	2744	452	2	0	0	0	0	logfile
✔	8YMK	39396	2024-10-09	2024-03-09	3.7	3.92	1.91	7.8	0.005	1.22	1.0	0.06	11.93	0.01	2.212	16.34	0.00	14.1	84.4	1.6	-1.73	0.59	0.62	-0.11	7.7	0.003	1.05	0.0	0.06	13.71	0.00	2.609	12.81	5.26	12.3	86.4	1.3	-1.08	1.86	0.59	0.60	-0.50	2744	452	2	0	0	0	0	logfile
✔	8YMK	39396	2024-11-14	2024-03-09	3.7	3.92	1.91	7.8	0.005	1.22	1.0	0.06	11.93	0.01	2.212	16.34	0.00	14.1	84.4	1.6	-1.73	0.59	0.62	-0.11	7.7	0.003	1.05	0.0	0.06	13.71	0.00	2.609	12.81	5.26	12.3	86.4	1.3	-1.08	1.86	0.59	0.60	-0.50	2744	452	2	0	0	0	0	logfile
✔	8YMK	39396	2024-12-27	2024-03-09	3.7	3.92	1.91	7.8	0.005	1.22	1.0	0.06	11.93	0.01	2.212	16.34	0.00	14.1	84.4	1.6	-1.73	0.59	0.62	-0.11	7.7	0.003	1.05	0.0	0.06	13.71	0.00	2.609	12.81	5.26	12.3	86.4	1.3	-1.08	1.86	0.59	0.60	-0.50	2744	452	2	0	0	0	0	logfile
✔	8YMK	39396	2025-04-26	2024-03-09	3.7	3.92	1.91	7.8	0.008	1.58	1.0	0.06	11.93	0.01	2.212	16.34	0.00	14.1	84.4	1.6	-1.73	0.59	0.62	-0.11	7.8	0.003	1.04	0.0	0.06	13.20	0.00	2.629	13.04	4.51	10.0	88.4	1.6	-0.72	0.98	0.60	0.62	0.12	2744	452	2	0	0	0	0	logfile
✔	8YMK	39396	2025-03-05	2024-03-09	3.7	3.92	1.91	7.8	0.005	1.22	1.0	0.06	11.93	0.01	2.212	16.34	0.00	14.1	84.4	1.6	-1.73	0.59	0.62	-0.11	7.8	0.003	1.10	0.0	0.06	13.44	0.00	2.625	10.83	3.01	10.9	87.7	1.3	-1.00	1.83	0.60	0.63	-0.02	2744	452	2	0	0	0	0	logfile
✔	8YMK	39396	2025-02-10	2024-03-09	3.7	3.92	1.91	7.8	0.005	1.22	1.0	0.06	11.93	0.01	2.212	16.34	0.00	14.1	84.4	1.6	-1.73	0.59	0.62	-0.11	7.7	0.003	1.14	0.0	0.06	13.52	0.00	2.612	12.37	4.51	11.2	87.5	1.3	-1.02	1.84	0.60	0.63	-0.04	2744	452	2	0	0	0	0	logfile
✘	8YMK	39396	2025-05-09	2024-03-09	3.7	3.92	1.91	7.8	0.008	1.58	1.0	0.06	11.93	0.01	2.212	16.34	0.00	14.1	84.4	1.6	-1.73	0.59	0.62	-0.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2744	452	2	0	0	0	0	logfile
✔	9AYW	44000	2024-09-30	2024-03-08	3.0	3.21	3.04	3.2	0.005	0.78	0.0	0.06	14.17	0.01	2.290	2.83	0.00	4.0	96.0	0.0	-0.76	0.68	0.81	3.01	3.2	0.003	0.55	0.0	0.04	15.84	0.00	2.507	4.03	1.77	2.8	97.2	0.0	0.47	1.57	0.69	0.84	2.98	24813	3123	6	0	30	0	0	logfile
✔	9AYW	44000	2025-01-26	2024-03-08	3.0	3.21	3.04	3.2	0.005	0.78	0.0	0.06	14.17	0.01	2.290	2.83	0.00	4.0	96.0	0.0	-0.76	0.68	0.81	3.01	3.2	0.003	0.55	0.0	0.04	15.73	0.00	2.358	3.77	1.95	3.0	97.0	0.0	0.50	1.57	0.70	0.84	3.01	24813	3123	6	0	30	0	0	logfile

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