Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VLY	43348	2025-01-15	2024-01-12	3.61	3.88	3.58	3.8	0.004	0.55	0.0	0.04	15.20	0.00	2.180	8.34	0.38	4.6	95.4	0.0	1.00	0.64	0.86	1.88	3.8	0.003	0.54	0.0	0.04	15.84	0.00	2.604	5.86	3.38	4.1	95.9	0.0	1.17	0.87	0.65	0.86	1.86	7755	992	5	0	7	0	0	logfile
✔	8VLY	43348	2024-12-28	2024-01-12	3.61	3.88	3.58	3.8	0.004	0.55	0.0	0.04	15.20	0.00	2.180	8.34	0.38	4.6	95.4	0.0	1.00	0.64	0.86	1.88	3.8	0.004	0.57	0.0	0.04	15.97	0.00	2.609	6.39	3.75	4.9	95.1	0.0	0.93	0.87	0.65	0.86	1.82	7755	992	5	0	7	0	0	logfile
✘	8VLU	43344	2024-10-10	2024-01-12	3.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8596	1096	4	0	9	0	0	logfile
✘	8VLU	43344	2024-09-24	2024-01-12	3.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8596	1096	4	0	9	0	0	logfile
✘	8VLU	43344	2024-08-03	2024-01-12	3.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8596	1096	4	0	9	0	0	logfile
✘	8VLU	43344	2025-04-29	2024-01-12	3.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8596	1096	4	0	9	0	0	logfile
✘	8VLU	43344	2025-03-13	2024-01-12	3.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8596	1096	4	0	9	0	0	logfile
✘	8VLU	43344	2025-02-13	2024-01-12	3.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8596	1096	4	0	9	0	0	logfile
✘	8VLU	43344	2025-01-15	2024-01-12	3.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8596	1096	4	0	9	0	0	logfile
✔	8VLY	43348	2024-11-14	2024-01-12	3.61	3.88	3.58	3.8	0.004	0.55	0.0	0.04	15.20	0.00	2.180	8.34	0.38	4.6	95.4	0.0	1.00	0.64	0.86	1.88	3.8	0.004	0.57	0.0	0.04	15.97	0.00	2.609	6.39	3.75	4.9	95.1	0.0	0.93	0.87	0.65	0.86	1.82	7755	992	5	0	7	0	0	logfile
✘	8RoY	19407	2024-07-19	2024-01-12	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8294	1174	4	0	1	0	0	logfile
✔	8RoY	19407	2024-09-24	2024-01-12	3.1	4.02	3.16	3.8	0.003	0.56	0.0	0.04	14.45	0.02	2.346	2.23	0.40	4.8	95.2	0.0	-1.39	0.78	0.81	3.13	3.8	0.002	0.59	0.0	0.04	14.85	0.00	2.461	4.08	3.08	4.3	95.7	0.0	-0.76	1.01	0.79	0.82	2.74	8294	1174	4	0	1	0	0	logfile
✔	8RoY	19407	2025-04-29	2024-01-12	3.1	4.02	3.17	3.8	0.003	0.56	0.0	0.04	14.45	0.02	2.346	2.23	0.40	4.8	95.2	0.0	-1.39	0.78	0.81	3.13	3.8	0.004	0.61	0.0	0.05	14.95	0.00	2.416	4.53	4.28	4.8	95.2	0.0	-0.64	1.02	0.79	0.82	2.79	8294	1174	4	0	1	0	0	logfile
✔	8RoY	19407	2024-12-28	2024-01-12	3.1	4.02	3.16	3.8	0.003	0.56	0.0	0.04	14.45	0.02	2.346	2.23	0.40	4.8	95.2	0.0	-1.39	0.78	0.81	3.13	3.8	0.002	0.59	0.0	0.04	14.85	0.00	2.461	4.08	3.08	4.3	95.7	0.0	-0.76	1.01	0.79	0.82	2.74	8294	1174	4	0	1	0	0	logfile
✔	8RoY	19407	2024-11-15	2024-01-12	3.1	4.02	3.16	3.8	0.003	0.56	0.0	0.04	14.45	0.02	2.346	2.23	0.40	4.8	95.2	0.0	-1.39	0.78	0.81	3.13	3.8	0.002	0.59	0.0	0.04	14.85	0.00	2.461	4.08	3.08	4.3	95.7	0.0	-0.76	1.01	0.79	0.82	2.74	8294	1174	4	0	1	0	0	logfile
✔	8RoY	19407	2024-10-10	2024-01-12	3.1	4.02	3.16	3.8	0.003	0.56	0.0	0.04	14.45	0.02	2.346	2.23	0.40	4.8	95.2	0.0	-1.39	0.78	0.81	3.13	3.8	0.002	0.59	0.0	0.04	14.85	0.00	2.461	4.08	3.08	4.3	95.7	0.0	-0.76	1.01	0.79	0.82	2.74	8294	1174	4	0	1	0	0	logfile
✔	8RoY	19407	2024-08-03	2024-01-12	3.1	4.02	3.16	3.8	0.003	0.56	0.0	0.04	14.45	0.02	2.346	2.23	0.40	4.8	95.2	0.0	-1.39	0.78	0.81	3.13	3.8	0.002	0.59	0.0	0.04	14.85	0.00	2.461	4.08	3.08	4.3	95.7	0.0	-0.76	1.01	0.79	0.82	2.74	8294	1174	4	0	1	0	0	logfile
✘	8VLU	43344	2024-11-15	2024-01-12	3.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8596	1096	4	0	9	0	0	logfile
✔	8RNU	19395	2025-01-17	2024-01-11	3.4	5.41	2.49	3.9	0.010	1.04	0.0	0.05	17.19	0.01	2.104	28.22	0.32	10.1	89.9	0.0	-2.17	0.62	0.30	0.31	3.9	0.004	0.77	0.0	0.05	17.91	0.01	2.426	24.31	3.45	10.2	89.8	0.0	-2.07	0.65	0.65	0.39	0.44	10848	1320	12	0	0	0	0	logfile
✔	8RNU	19395	2025-02-14	2024-01-11	3.4	5.41	2.49	3.9	0.010	1.04	0.0	0.05	17.19	0.01	2.104	28.22	0.32	10.1	89.9	0.0	-2.17	0.62	0.30	0.31	3.9	0.004	0.77	0.0	0.05	17.91	0.01	2.426	24.31	3.45	10.2	89.8	0.0	-2.07	0.65	0.65	0.39	0.44	10848	1320	12	0	0	0	0	logfile

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