Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YG8	39238	2024-11-16	2024-02-26	2.97	4.08	3.08	3.2	0.003	0.58	0.0	0.04	16.02	0.00	2.190	7.99	0.00	7.5	92.4	0.1	-0.65	0.93	0.87	2.86	3.3	0.003	0.68	0.0	0.04	14.40	0.00	2.430	6.12	0.63	8.1	91.9	0.1	-0.66	1.04	0.94	0.88	2.56	11414	1395	8	0	16	0	0	logfile
✔	8YG8	39238	2024-12-29	2024-02-26	2.97	4.08	3.08	3.2	0.003	0.58	0.0	0.04	16.02	0.00	2.190	7.99	0.00	7.5	92.4	0.1	-0.65	0.93	0.87	2.86	3.3	0.003	0.68	0.0	0.04	14.40	0.00	2.430	6.12	0.63	8.1	91.9	0.1	-0.66	1.04	0.94	0.88	2.56	11414	1395	8	0	16	0	0	logfile
✔	8YGA	39240	2025-05-30	2024-02-26	4.53	7.03	4.63	4.5	0.004	0.86	0.0	0.05	16.94	0.01	2.059	18.82	0.63	6.9	92.7	0.3	-0.73	0.89	0.73	—	4.5	0.002	0.63	0.0	0.04	14.50	0.00	2.396	11.06	0.00	4.8	95.0	0.2	-0.09	7.60	0.89	0.69	—	33140	3980	4	0	0	0	0	logfile
✘	8YGJ	39253	2025-05-22	2024-02-26	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19466	1777	6	241	0	0	0	logfile
✘	8YGJ	39253	2025-01-25	2024-02-26	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19466	1777	6	241	0	0	0	logfile
✘	8YGJ	39253	2024-09-29	2024-02-26	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19466	1777	6	241	0	0	0	logfile
✘	8YGJ	39253	2024-08-08	2024-02-26	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19466	1777	6	241	0	0	0	logfile
✔	8YG1	39233	2025-05-21	2024-02-26	3.74	2.55	3.74	2.3	0.003	0.69	0.0	0.04	18.37	0.00	2.134	8.87	0.73	6.0	93.8	0.2	-0.45	0.72	0.73	1.04	2.3	0.004	0.63	0.0	0.04	18.89	0.00	2.481	8.55	2.94	5.6	94.1	0.3	0.08	0.95	0.73	0.74	0.87	21026	2536	4	0	0	0	0	logfile
✔	8YGo	39258	2025-05-16	2024-02-26	3.29	2.47	3.29	2.2	0.004	0.71	0.0	0.04	18.57	0.00	2.118	12.63	0.45	6.9	92.5	0.6	-0.29	0.71	0.68	1.10	2.2	0.003	0.67	0.0	0.04	19.02	0.00	2.420	9.61	3.33	7.1	92.6	0.3	0.19	0.97	0.73	0.71	1.24	14208	1711	4	0	0	0	0	logfile
✔	9ATB	43829	2024-12-30	2024-02-26	3.4	3.85	3.47	3.6	0.008	0.79	0.0	0.05	13.58	0.00	2.010	5.66	0.04	4.2	95.8	0.0	0.23	0.44	0.88	1.68	3.6	0.002	0.47	0.0	0.04	15.04	0.00	2.503	2.95	0.84	2.6	97.4	0.0	2.46	0.38	0.43	0.86	0.97	63316	8690	22	0	0	0	0	logfile
✔	9ATB	43829	2025-01-19	2024-02-26	3.4	3.85	3.47	3.6	0.008	0.79	0.0	0.05	13.58	0.00	2.010	5.66	0.04	4.2	95.8	0.0	0.23	0.44	0.88	1.68	3.6	0.002	0.47	0.0	0.04	15.14	0.00	2.492	2.89	1.04	2.6	97.4	0.0	2.41	0.37	0.43	0.86	1.04	63316	8690	22	0	0	0	0	logfile
✔	9ASQ	43823	2024-10-12	2024-02-26	3.0	3.78	3.05	3.3	0.003	0.48	0.0	0.04	18.28	0.00	2.248	4.84	0.18	2.7	97.3	0.0	1.81	0.75	0.62	2.49	3.3	0.003	0.58	0.0	0.04	18.07	0.00	2.347	4.03	0.71	2.8	97.2	0.0	1.86	0.37	0.83	0.88	2.34	12359	1257	7	100	4	2	0	logfile
✔	9ASQ	43823	2025-05-14	2024-02-26	3.0	3.78	3.05	3.3	0.003	0.48	0.0	0.04	18.28	0.00	2.248	4.84	0.18	2.7	97.3	0.0	1.81	0.75	0.62	2.49	3.3	0.005	0.61	0.0	0.04	18.17	0.00	2.346	4.50	1.16	3.5	96.5	0.0	1.75	0.30	0.84	0.88	2.38	12359	1257	7	100	4	2	0	logfile
✔	9ASM	43819	2025-05-14	2024-02-26	2.8	3.54	2.88	3.1	0.003	0.52	0.0	0.04	17.97	0.00	2.283	3.96	1.04	2.7	97.3	0.0	1.39	0.75	0.63	2.90	3.1	0.003	0.54	0.0	0.04	17.78	0.00	2.255	3.28	0.57	3.3	96.7	0.0	1.97	0.92	0.84	0.90	2.61	11648	1180	6	95	4	2	0	logfile
✔	9ASQ	43823	2024-09-26	2024-02-26	3.0	3.78	3.05	3.3	0.003	0.48	0.0	0.04	18.28	0.00	2.248	4.84	0.18	2.7	97.3	0.0	1.81	0.75	0.62	2.49	3.3	0.003	0.58	0.0	0.04	18.07	0.00	2.347	4.03	0.71	2.8	97.2	0.0	1.86	0.37	0.83	0.88	2.34	12359	1257	7	100	4	2	0	logfile
✔	8S5W	19752	2025-03-05	2024-02-26	3.05	3.14	2.97	3.1	0.012	0.84	0.0	0.04	17.30	0.00	2.313	5.50	0.24	6.5	93.5	0.0	-1.89	0.56	0.80	2.00	3.1	0.003	0.58	0.0	0.04	17.90	0.00	2.583	5.12	4.51	4.0	96.0	0.0	0.96	0.89	0.60	0.85	2.72	4009	502	3	0	1	0	0	logfile
✔	9ASQ	43823	2024-12-30	2024-02-26	3.0	3.78	3.05	3.3	0.003	0.48	0.0	0.04	18.28	0.00	2.248	4.84	0.18	2.7	97.3	0.0	1.81	0.75	0.62	2.49	3.3	0.003	0.58	0.0	0.04	18.07	0.00	2.347	4.03	0.71	2.8	97.2	0.0	1.86	0.37	0.83	0.88	2.34	12359	1257	7	100	4	2	0	logfile
✔	8S5W	19752	2025-02-11	2024-02-26	3.05	3.14	2.97	3.1	0.012	0.84	0.0	0.04	17.30	0.00	2.313	5.50	0.24	6.5	93.5	0.0	-1.89	0.56	0.80	2.00	3.1	0.004	0.62	0.0	0.04	18.02	0.00	2.584	5.37	6.18	4.0	96.0	0.0	0.69	0.89	0.61	0.85	2.62	4009	502	3	0	1	0	0	logfile
✔	8S5W	19752	2025-01-13	2024-02-26	3.05	3.14	2.97	3.1	0.012	0.84	0.0	0.04	17.30	0.00	2.313	5.50	0.24	6.5	93.5	0.0	-1.89	0.56	0.80	2.00	3.1	0.004	0.62	0.0	0.04	18.02	0.00	2.584	5.37	6.18	4.0	96.0	0.0	0.69	0.89	0.61	0.85	2.62	4009	502	3	0	1	0	0	logfile
✔	9ASQ	43823	2024-11-17	2024-02-26	3.0	3.78	3.05	3.3	0.003	0.48	0.0	0.04	18.28	0.00	2.248	4.84	0.18	2.7	97.3	0.0	1.81	0.75	0.62	2.49	3.3	0.003	0.58	0.0	0.04	18.07	0.00	2.347	4.03	0.71	2.8	97.2	0.0	1.86	0.37	0.83	0.88	2.34	12359	1257	7	100	4	2	0	logfile

• ← previous
• Page 319 of 5030
• next →