Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VB4	43112	2024-12-30	2023-12-12	2.98	3.30	3.28	3.4	0.002	0.50	0.0	0.04	12.55	0.00	0.748	7.47	0.00	2.3	97.7	0.0	1.19	0.59	0.82	2.48	3.4	0.004	0.60	0.0	0.04	16.04	0.01	2.335	2.00	1.44	3.2	96.8	0.0	1.17	1.51	0.58	0.86	2.01	60348	7848	24	0	0	0	0	logfile
✔	8VB4	43112	2025-01-18	2023-12-12	2.98	3.30	3.28	3.4	0.002	0.50	0.0	0.04	12.55	0.00	0.748	7.47	0.00	2.3	97.7	0.0	1.19	0.59	0.82	2.48	3.4	0.002	0.55	0.0	0.04	15.96	0.01	1.831	2.22	1.15	2.7	97.3	0.0	1.63	1.51	0.58	0.85	1.94	60348	7848	24	0	0	0	0	logfile
✔	8RFB	19117	2025-02-11	2023-12-12	4.01	4.26	4.04	4.2	0.015	1.68	0.0	0.10	11.24	0.01	2.144	5.97	2.04	2.7	97.3	0.0	0.42	0.73	0.77	—	4.2	0.003	0.66	0.0	0.04	13.35	0.00	2.489	8.51	0.00	3.2	96.8	0.0	0.23	0.95	0.71	0.78	—	4632	597	1	0	0	0	0	logfile
✘	8VBE	43122	2025-01-15	2023-12-12	2.6	3.21	2.56	3.1	0.004	0.68	0.0	0.05	19.82	0.00	2.052	4.72	4.46	4.0	95.4	0.5	-0.35	0.79	0.86	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8421	931	4	39	3	0	0	logfile
✔	8RFJ	19125	2025-01-26	2023-12-12	3.18	3.67	3.38	2.1	0.003	0.55	0.0	0.04	16.98	0.00	2.105	10.24	0.00	2.0	98.0	0.0	0.80	0.89	0.81	2.36	2.1	0.005	0.66	0.0	0.04	18.33	0.00	2.486	10.47	1.38	3.3	96.7	0.0	0.46	1.17	0.90	0.84	2.25	24679	2877	13	129	1	0	0	logfile
✘	8VBA	43118	2025-01-16	2023-12-12	3.29	3.69	3.34	3.8	0.010	1.31	0.0	0.12	12.48	0.00	2.200	14.87	0.51	4.6	94.9	0.5	-0.19	0.67	0.76	3.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9416	1260	4	0	39	0	0	logfile
✘	8VBA	43118	2024-10-11	2023-12-12	3.29	3.69	3.34	3.8	0.010	1.31	0.0	0.12	12.48	0.00	2.200	14.87	0.51	4.6	94.9	0.5	-0.19	0.67	0.76	3.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9416	1260	4	0	39	0	0	logfile
✘	8VBA	43118	2024-09-25	2023-12-12	3.29	3.69	3.34	3.8	0.010	1.31	0.0	0.12	12.48	0.00	2.200	14.87	0.51	4.6	94.9	0.5	-0.19	0.67	0.76	3.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9416	1260	4	0	39	0	0	logfile
✘	8VBA	43118	2025-03-14	2023-12-12	3.29	3.69	3.32	3.8	0.010	1.31	0.0	0.12	12.48	0.00	2.200	14.87	0.51	4.6	94.9	0.5	-0.19	0.67	0.76	3.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9416	1260	4	0	39	0	0	logfile
✘	8VBA	43118	2025-02-13	2023-12-12	3.29	3.69	3.34	3.8	0.010	1.31	0.0	0.12	12.48	0.00	2.200	14.87	0.51	4.6	94.9	0.5	-0.19	0.67	0.76	3.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9416	1260	4	0	39	0	0	logfile
✔	8RFH	19121	2024-10-12	2023-12-12	3.9	4.24	3.78	4.1	0.003	0.76	1.0	0.05	15.84	0.00	2.201	17.02	1.44	2.7	97.2	0.1	0.66	0.81	0.74	0.73	4.0	0.004	0.83	0.0	0.05	16.14	0.00	2.401	17.69	2.28	4.5	95.5	0.0	0.29	1.03	0.82	0.77	0.74	11802	1460	4	0	2	0	0	logfile
✔	8RFH	19121	2024-09-26	2023-12-12	3.9	4.24	3.78	4.1	0.003	0.76	1.0	0.05	15.84	0.00	2.201	17.02	1.44	2.7	97.2	0.1	0.66	0.81	0.74	0.73	4.0	0.004	0.83	0.0	0.05	16.14	0.00	2.401	17.69	2.28	4.5	95.5	0.0	0.29	1.03	0.82	0.77	0.74	11802	1460	4	0	2	0	0	logfile
✔	8RFH	19121	2024-08-05	2023-12-12	3.9	4.24	3.78	4.1	0.003	0.76	1.0	0.05	15.84	0.00	2.201	17.02	1.44	2.7	97.2	0.1	0.66	0.81	0.74	0.73	4.0	0.004	0.83	0.0	0.05	16.14	0.00	2.401	17.69	2.28	4.5	95.5	0.0	0.29	1.03	0.82	0.77	0.74	11802	1460	4	0	2	0	0	logfile
✔	8RFH	19121	2024-07-20	2023-12-12	3.9	4.24	3.78	4.1	0.003	0.76	1.0	0.05	15.84	0.00	2.201	17.02	1.44	2.7	97.2	0.1	0.66	0.81	0.74	0.73	4.0	0.003	0.80	0.0	0.05	16.12	0.00	2.218	16.47	2.05	3.7	96.3	0.0	0.24	1.02	0.82	0.75	0.99	11802	1460	4	0	2	0	0	logfile
✔	8RFH	19121	2024-06-27	2023-12-12	3.9	4.24	3.78	4.1	0.003	0.76	1.0	0.05	15.84	0.00	2.201	17.02	1.44	2.7	97.2	0.1	0.66	0.81	0.74	0.73	4.0	0.003	0.77	0.0	0.05	16.04	0.00	2.201	17.23	2.13	3.3	96.7	0.0	0.36	1.00	0.82	0.76	0.99	11802	1460	4	0	2	0	0	logfile
✔	8RFH	19121	2024-02-15	2023-12-12	3.9	4.24	3.78	4.1	0.003	0.76	1.0	0.05	15.84	0.00	2.201	17.02	1.44	2.7	97.2	0.1	0.66	0.81	0.74	0.73	4.0	0.003	0.77	0.0	0.05	16.04	0.00	2.201	17.23	2.13	3.3	96.7	0.0	0.36	1.00	0.82	0.76	0.99	11802	1460	4	0	2	0	0	logfile
✔	8RFH	19121	2025-01-18	2023-12-12	3.9	4.24	3.78	4.1	0.003	0.76	1.0	0.05	15.84	0.00	2.201	17.02	1.44	2.7	97.2	0.1	0.66	0.81	0.74	0.73	4.0	0.003	0.81	0.0	0.05	16.00	0.00	2.415	15.09	2.43	3.1	96.9	0.0	0.54	1.01	0.82	0.76	0.91	11802	1460	4	0	2	0	0	logfile
✔	8RFH	19121	2024-12-30	2023-12-12	3.9	4.24	3.78	4.1	0.003	0.76	1.0	0.05	15.84	0.00	2.201	17.02	1.44	2.7	97.2	0.1	0.66	0.81	0.74	0.73	4.0	0.004	0.83	0.0	0.05	16.14	0.00	2.401	17.69	2.28	4.5	95.5	0.0	0.29	1.03	0.82	0.77	0.74	11802	1460	4	0	2	0	0	logfile
✔	8RFH	19121	2024-11-16	2023-12-12	3.9	4.24	3.78	4.1	0.003	0.76	1.0	0.05	15.84	0.00	2.201	17.02	1.44	2.7	97.2	0.1	0.66	0.81	0.74	0.73	4.0	0.004	0.83	0.0	0.05	16.14	0.00	2.401	17.69	2.28	4.5	95.5	0.0	0.29	1.03	0.82	0.77	0.74	11802	1460	4	0	2	0	0	logfile
✘	8VAT	43102	2024-10-15	2023-12-11	3.2	3.36	3.19	3.4	0.005	0.72	0.0	0.04	16.28	0.00	1.709	12.31	0.00	4.6	95.3	0.1	0.21	0.70	0.78	1.80	—	—	—	—	—	—	—	—	—	—	—	—	—	1.00	—	—	—	1.45	19423	2393	13	31	13	0	0	logfile

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