Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YEX	39204	2025-02-11	2024-02-23	3.68	3.97	3.75	3.9	0.004	0.79	0.0	0.04	17.18	0.01	2.139	16.33	0.72	4.5	95.5	0.0	0.80	0.55	0.74	1.00	3.9	0.003	0.67	0.0	0.04	17.28	0.00	2.523	10.89	2.44	5.3	94.7	0.0	1.45	0.45	0.54	0.74	1.08	6532	784	2	0	0	0	0	logfile
✔	8YEX	39204	2024-11-14	2024-02-23	3.68	3.97	3.75	3.9	0.004	0.79	0.0	0.04	17.18	0.01	2.139	16.33	0.72	4.5	95.5	0.0	0.80	0.55	0.74	1.00	3.9	0.003	0.66	0.0	0.04	17.34	0.00	2.431	10.73	2.72	5.4	94.6	0.0	1.43	0.46	0.54	0.73	1.08	6532	784	2	0	0	0	0	logfile
✔	8YEX	39204	2025-03-11	2024-02-23	3.68	3.97	3.74	3.9	0.004	0.79	0.0	0.04	17.18	0.01	2.139	16.33	0.72	4.5	95.5	0.0	0.80	0.55	0.74	1.00	3.9	0.005	1.08	1.0	0.05	17.32	0.00	1.985	11.96	2.72	6.0	94.0	0.0	1.45	1.20	0.54	0.74	1.08	6532	784	2	0	0	0	0	logfile
✔	8YEX	39204	2025-05-10	2024-02-23	3.68	3.97	3.74	3.9	0.004	0.79	0.0	0.04	17.18	0.01	2.139	16.33	0.72	4.5	95.5	0.0	0.80	0.55	0.74	1.00	3.9	0.003	0.67	0.0	0.04	17.28	0.00	2.523	10.89	2.44	5.3	94.7	0.0	1.45	0.45	0.54	0.74	1.08	6532	784	2	0	0	0	0	logfile
✔	8YET	39203	2025-02-14	2024-02-23	4.16	4.38	4.16	4.3	0.003	0.74	0.0	0.04	17.60	0.00	2.213	8.71	0.09	5.8	94.1	0.1	1.34	0.62	0.75	—	4.3	0.003	0.64	0.0	0.04	16.35	0.00	2.375	8.01	0.00	5.3	94.5	0.2	1.31	1.62	0.62	0.75	—	10102	1206	3	0	2	0	0	logfile
✔	8YEX	39204	2025-04-27	2024-02-23	3.68	3.97	3.74	3.9	0.004	0.79	0.0	0.04	17.18	0.01	2.139	16.33	0.72	4.5	95.5	0.0	0.80	0.55	0.74	1.00	3.9	0.005	1.08	1.0	0.05	17.32	0.00	1.985	11.96	2.72	6.0	94.0	0.0	1.45	1.20	0.54	0.74	1.08	6532	784	2	0	0	0	0	logfile
✔	8YEX	39204	2025-01-14	2024-02-23	3.68	3.97	3.75	3.9	0.004	0.79	0.0	0.04	17.18	0.01	2.139	16.33	0.72	4.5	95.5	0.0	0.80	0.55	0.74	1.00	3.9	0.003	0.67	0.0	0.04	17.28	0.00	2.523	10.89	2.44	5.3	94.7	0.0	1.45	0.45	0.54	0.74	1.08	6532	784	2	0	0	0	0	logfile
✔	8YET	39203	2025-01-16	2024-02-23	4.16	4.38	4.16	4.3	0.003	0.74	0.0	0.04	17.60	0.00	2.213	8.71	0.09	5.8	94.1	0.1	1.34	0.62	0.75	—	4.3	0.003	0.64	0.0	0.04	16.35	0.00	2.375	8.01	0.00	5.3	94.5	0.2	1.31	1.62	0.62	0.75	—	10102	1206	3	0	2	0	0	logfile
✘	9ARF	43780	2025-05-22	2024-02-23	3.13	3.32	3.16	3.3	0.010	1.17	42.0	0.08	11.19	0.01	1.985	8.25	5.16	4.6	95.3	0.1	-3.34	0.69	0.76	3.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23032	3166	10	0	6	0	0	logfile
✔	8YEX	39204	2024-12-27	2024-02-23	3.68	3.97	3.75	3.9	0.004	0.79	0.0	0.04	17.18	0.01	2.139	16.33	0.72	4.5	95.5	0.0	0.80	0.55	0.74	1.00	3.9	0.003	0.66	0.0	0.04	17.34	0.00	2.431	10.73	2.72	5.4	94.6	0.0	1.43	0.46	0.54	0.73	1.08	6532	784	2	0	0	0	0	logfile
✘	9ARF	43780	2025-01-25	2024-02-23	3.13	3.32	3.17	3.3	0.010	1.16	42.0	0.08	11.19	0.01	1.985	8.25	5.16	4.6	95.3	0.1	-3.34	0.69	0.76	3.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23032	3166	10	0	6	0	0	logfile
✔	9ARH	43782	2025-05-22	2024-02-23	3.69	4.00	3.70	4.0	0.015	1.64	74.0	0.11	12.97	0.01	1.736	19.19	8.98	7.4	92.3	0.4	-3.17	0.70	0.73	1.23	4.0	0.003	0.69	0.0	0.04	14.38	0.00	2.421	7.20	4.72	7.7	92.2	0.1	-0.81	1.62	0.70	0.74	1.00	22792	3182	10	0	6	0	0	logfile
✔	9ARH	43782	2025-01-25	2024-02-23	3.69	4.00	3.71	4.0	0.013	1.58	74.0	0.11	12.97	0.01	1.335	19.19	8.98	7.4	92.3	0.4	-3.17	0.70	0.73	1.23	4.0	0.004	0.73	0.0	0.05	14.56	0.00	2.432	7.36	6.00	8.8	91.1	0.1	-1.07	1.62	0.71	0.75	1.15	22792	3182	10	0	6	0	0	logfile
✘	9ARF	43780	2024-09-29	2024-02-23	3.13	3.32	3.17	3.3	0.010	1.16	42.0	0.08	11.19	0.01	1.985	8.25	5.16	4.6	95.3	0.1	-3.34	0.69	0.76	3.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23032	3166	10	0	6	0	0	logfile
✘	9ARF	43780	2024-08-08	2024-02-23	3.13	3.32	3.17	3.3	0.010	1.16	42.0	0.08	11.19	0.01	1.985	8.25	5.16	4.6	95.3	0.1	-3.34	0.69	0.76	3.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23032	3166	10	0	6	0	0	logfile
✔	9ARH	43782	2024-09-29	2024-02-23	3.69	4.00	3.71	4.0	0.013	1.58	74.0	0.11	12.97	0.01	1.335	19.19	8.98	7.4	92.3	0.4	-3.17	0.70	0.73	1.23	4.0	0.003	0.70	0.0	0.04	14.49	0.00	2.444	7.29	4.54	8.0	92.0	0.1	-0.90	1.62	0.69	0.73	1.10	22792	3182	10	0	6	0	0	logfile
✔	9ARH	43782	2024-08-08	2024-02-23	3.69	4.00	3.71	4.0	0.013	1.58	74.0	0.11	12.97	0.01	1.736	19.19	8.98	7.4	92.3	0.4	-3.17	0.70	0.73	1.23	4.0	0.004	0.81	2.0	0.05	14.34	0.00	1.972	7.59	4.67	7.8	92.1	0.1	-0.68	1.62	0.69	0.73	1.08	22792	3182	10	0	6	0	0	logfile
✔	8YF0	39206	2024-11-15	2024-02-23	3.49	3.73	3.58	3.7	0.003	0.59	0.0	0.04	14.65	0.00	2.271	10.72	0.00	2.8	97.2	0.0	0.97	0.52	0.61	0.74	3.7	0.003	0.68	0.0	0.04	16.70	0.00	2.468	12.21	2.47	2.8	97.2	0.0	1.04	0.43	0.54	0.65	0.61	9181	1159	2	0	0	0	0	logfile
✔	9ARi	43783	2025-01-23	2024-02-23	3.9	4.18	4.02	4.1	0.007	1.12	45.0	0.07	10.71	0.01	1.816	12.63	9.33	6.9	92.9	0.3	-3.31	0.70	0.72	1.20	4.1	0.003	0.68	0.0	0.04	12.71	0.00	2.406	6.52	4.93	8.3	91.7	0.0	-0.79	1.22	0.69	0.71	1.15	20756	3178	6	0	0	0	0	logfile
✔	9ARi	43783	2025-05-21	2024-02-23	3.9	4.18	4.01	4.1	0.010	1.16	45.0	0.07	10.71	0.01	1.816	12.63	9.33	6.9	92.9	0.3	-3.31	0.70	0.72	1.20	4.1	0.002	0.65	0.0	0.04	12.73	0.00	2.385	6.27	4.34	7.6	92.4	0.0	-0.55	1.22	0.69	0.70	1.01	20756	3178	6	0	0	0	0	logfile

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