Table showing results for all available months

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XDL	38280	2025-01-15	2023-12-11	2.44	2.66	2.49	2.6	0.004	0.77	0.0	0.04	18.26	0.01	2.286	4.95	6.74	2.6	97.4	0.0	1.09	0.70	0.83	3.76	2.6	0.004	0.74	0.0	0.05	17.48	0.01	2.449	3.80	2.57	2.3	97.7	0.0	1.19	0.53	0.70	0.86	3.55	8746	1109	6	0	6	0	0	logfile
✔	8VAT	43102	2024-08-07	2023-12-11	3.2	3.36	3.19	3.4	0.005	0.72	0.0	0.04	16.28	0.00	1.709	12.31	0.00	4.6	95.3	0.1	0.21	0.70	0.78	1.80	3.4	0.003	0.65	0.0	0.04	17.92	0.00	1.612	9.65	1.75	3.8	96.0	0.1	1.00	1.00	0.70	0.80	1.45	19423	2393	13	31	13	0	0	logfile
✘	8VAT	43102	2024-07-22	2023-12-11	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19423	2393	13	31	13	0	0	logfile
✔	8XDL	38280	2025-03-13	2023-12-11	2.44	2.66	2.49	2.6	0.004	0.77	0.0	0.04	18.26	0.01	2.286	4.95	6.74	2.6	97.4	0.0	1.09	0.70	0.83	3.76	2.6	0.005	0.75	0.0	0.05	17.43	0.01	2.452	3.86	2.67	2.4	97.6	0.0	1.19	0.53	0.70	0.86	3.62	8746	1109	6	0	6	0	0	logfile
✔	8XDL	38280	2024-12-28	2023-12-11	2.44	2.66	2.49	2.6	0.004	0.77	0.0	0.04	18.26	0.01	2.286	4.95	6.74	2.6	97.4	0.0	1.09	0.70	0.83	3.76	2.6	0.005	0.75	0.0	0.05	17.41	0.01	2.364	3.98	2.25	2.3	97.7	0.0	1.20	1.00	0.71	0.86	3.61	8746	1109	6	0	6	0	0	logfile
✔	8VAT	43102	2025-01-22	2023-12-11	3.2	3.36	3.19	3.4	0.005	0.72	0.0	0.04	16.28	0.00	1.709	12.31	0.00	4.6	95.3	0.1	0.21	0.70	0.78	1.80	3.4	0.003	0.64	0.0	0.04	17.98	0.00	1.481	9.98	1.95	3.7	96.2	0.1	0.90	0.97	0.70	0.80	1.60	19423	2393	13	31	13	0	0	logfile
✔	8VAA	43087	2024-12-31	2023-12-11	3.58	4.21	3.18	3.4	0.003	0.64	0.0	0.04	16.30	0.00	1.978	5.87	0.26	4.2	95.8	0.0	0.05	0.79	0.78	2.07	3.4	0.004	0.59	0.0	0.04	16.41	0.00	1.926	4.45	0.53	3.4	96.6	0.0	1.80	2.73	0.87	0.88	2.08	67770	4390	30	0	20	0	33030	logfile
✔	8VAA	43087	2025-01-21	2023-12-11	3.58	4.21	3.18	3.4	0.003	0.64	0.0	0.04	16.30	0.00	1.978	5.87	0.26	4.2	95.8	0.0	0.05	0.79	0.78	2.07	3.4	0.002	0.57	0.0	0.04	16.36	0.00	1.938	3.88	0.53	3.3	96.7	0.0	2.08	2.73	0.87	0.88	2.03	67770	4390	30	0	20	0	33030	logfile
✔	8XDM	38281	2024-12-28	2023-12-11	2.45	2.66	2.51	2.6	0.003	0.67	0.0	0.04	17.96	0.00	2.238	5.36	6.52	2.1	97.9	0.0	1.66	0.66	0.82	2.67	2.6	0.003	0.66	0.0	0.05	17.09	0.00	2.418	3.92	2.99	2.1	97.9	0.0	1.58	0.99	0.69	0.86	3.41	8746	1109	6	0	6	0	0	logfile
✔	8XDM	38281	2025-02-13	2023-12-11	2.45	2.66	2.51	2.6	0.003	0.67	0.0	0.04	17.96	0.00	2.238	5.36	6.52	2.1	97.9	0.0	1.66	0.66	0.82	2.67	2.6	0.004	0.73	0.0	0.05	17.26	0.00	2.401	3.69	3.85	2.1	97.9	0.0	1.37	1.95	0.69	0.86	3.50	8746	1109	6	0	6	0	0	logfile
✔	8XDM	38281	2025-01-15	2023-12-11	2.45	2.66	2.51	2.6	0.003	0.67	0.0	0.04	17.96	0.00	2.238	5.36	6.52	2.1	97.9	0.0	1.66	0.66	0.82	2.67	2.6	0.004	0.73	0.0	0.05	17.26	0.00	2.401	3.69	3.85	2.1	97.9	0.0	1.37	1.95	0.69	0.86	3.50	8746	1109	6	0	6	0	0	logfile
✔	8XEF	38288	2025-02-11	2023-12-11	4.41	6.10	4.46	5.4	0.004	1.00	0.0	0.06	12.95	0.01	1.886	13.27	0.00	9.9	90.0	0.2	-3.14	0.77	0.76	—	5.4	0.004	0.78	0.0	0.05	13.00	0.01	2.368	21.43	0.00	10.8	89.0	0.2	-2.99	0.92	0.78	0.79	—	5007	649	5	0	0	0	0	logfile
✔	8XDM	38281	2025-03-13	2023-12-11	2.45	2.66	2.51	2.6	0.003	0.67	0.0	0.04	17.96	0.00	2.238	5.36	6.52	2.1	97.9	0.0	1.66	0.66	0.82	2.67	2.6	0.003	0.69	0.0	0.05	17.18	0.00	2.403	3.86	1.93	2.0	98.0	0.0	1.50	1.95	0.69	0.86	3.52	8746	1109	6	0	6	0	0	logfile
✔	8XEF	38288	2025-01-14	2023-12-11	4.41	6.10	4.46	5.4	0.004	1.00	0.0	0.06	12.95	0.01	1.886	13.27	0.00	9.9	90.0	0.2	-3.14	0.77	0.76	—	5.4	0.004	0.78	0.0	0.05	13.00	0.01	2.368	21.43	0.00	10.8	89.0	0.2	-2.99	0.92	0.78	0.79	—	5007	649	5	0	0	0	0	logfile
✔	8VAE	43089	2024-12-27	2023-12-11	3.7	3.91	3.77	3.8	0.003	0.68	0.0	0.04	15.27	0.00	2.251	9.01	0.00	2.9	97.1	0.0	1.75	0.83	0.81	1.63	3.8	0.003	0.66	0.0	0.04	17.06	0.00	2.549	8.36	2.36	3.1	96.9	0.0	1.99	0.77	0.83	0.82	1.51	4653	581	2	0	3	0	0	logfile
✔	8VAo	43097	2024-11-19	2023-12-11	2.8	2.12	2.86	2.0	0.003	0.51	0.0	0.04	13.27	0.01	1.962	2.86	0.00	2.3	97.7	0.0	-0.67	0.76	0.78	4.19	2.0	0.005	0.61	0.0	0.04	16.58	0.00	2.357	3.70	2.31	3.4	96.6	0.0	1.04	0.89	0.78	0.80	3.89	20154	1311	6	0	9	0	9942	logfile
✔	8VAo	43097	2024-09-28	2023-12-11	2.8	2.12	2.86	2.0	0.003	0.51	0.0	0.04	13.27	0.01	1.962	2.86	0.00	2.3	97.7	0.0	-0.67	0.76	0.78	4.19	2.0	0.005	0.61	0.0	0.04	16.58	0.00	2.357	3.70	2.31	3.4	96.6	0.0	1.04	0.89	0.78	0.80	3.89	20154	1311	6	0	9	0	9942	logfile
✔	8VAo	43097	2024-08-07	2023-12-11	2.8	2.12	2.86	2.0	0.003	0.51	0.0	0.04	13.27	0.01	2.338	2.86	0.00	2.3	97.7	0.0	-0.67	0.76	0.78	4.19	2.0	0.004	0.60	0.0	0.04	16.62	0.01	2.235	3.70	2.67	3.1	96.9	0.0	1.14	0.88	0.78	0.80	3.81	20154	1311	6	0	9	0	9942	logfile
✔	8VAo	43097	2025-01-23	2023-12-11	2.8	2.12	2.86	2.0	0.003	0.51	0.0	0.04	13.27	0.01	1.962	2.86	0.00	2.3	97.7	0.0	-0.67	0.76	0.78	4.19	2.0	0.004	0.59	0.0	0.04	16.47	0.00	2.373	3.45	2.49	2.8	97.2	0.0	1.06	1.29	0.78	0.80	3.84	20154	1311	6	0	9	0	9942	logfile
✔	8VAE	43089	2025-01-14	2023-12-11	3.7	3.91	3.77	3.8	0.003	0.68	0.0	0.04	15.27	0.00	2.251	9.01	0.00	2.9	97.1	0.0	1.75	0.83	0.81	1.63	3.8	0.003	0.68	0.0	0.04	17.00	0.00	2.548	9.12	1.97	3.1	96.9	0.0	1.97	0.77	0.83	0.82	1.77	4653	581	2	0	3	0	0	logfile

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