Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YEX	39204	2025-05-10	2024-02-23	3.68	3.97	3.74	3.9	0.004	0.79	0.0	0.04	17.18	0.01	2.139	16.33	0.72	4.5	95.5	0.0	0.80	0.55	0.74	1.00	3.9	0.003	0.67	0.0	0.04	17.28	0.00	2.523	10.89	2.44	5.3	94.7	0.0	1.45	0.45	0.54	0.74	1.08	6532	784	2	0	0	0	0	logfile
✔	8YEX	39204	2024-11-14	2024-02-23	3.68	3.97	3.75	3.9	0.004	0.79	0.0	0.04	17.18	0.01	2.139	16.33	0.72	4.5	95.5	0.0	0.80	0.55	0.74	1.00	3.9	0.003	0.66	0.0	0.04	17.34	0.00	2.431	10.73	2.72	5.4	94.6	0.0	1.43	0.46	0.54	0.73	1.08	6532	784	2	0	0	0	0	logfile
✔	9ARG	43781	2024-09-29	2024-02-23	4.05	4.35	4.12	4.2	0.002	0.57	0.0	0.04	9.08	0.00	2.028	3.98	4.82	4.4	95.6	0.0	-2.99	0.70	0.67	—	4.2	0.003	0.67	0.0	0.04	10.00	0.00	2.550	6.54	0.00	5.9	94.1	0.0	-0.69	1.12	0.72	0.72	—	21008	3166	4	0	0	0	0	logfile
✔	8YEX	39204	2024-12-27	2024-02-23	3.68	3.97	3.75	3.9	0.004	0.79	0.0	0.04	17.18	0.01	2.139	16.33	0.72	4.5	95.5	0.0	0.80	0.55	0.74	1.00	3.9	0.003	0.66	0.0	0.04	17.34	0.00	2.431	10.73	2.72	5.4	94.6	0.0	1.43	0.46	0.54	0.73	1.08	6532	784	2	0	0	0	0	logfile
✔	9ARG	43781	2025-01-24	2024-02-23	4.05	4.35	4.12	4.2	0.002	0.57	0.0	0.04	9.08	0.00	2.028	3.98	4.82	4.4	95.6	0.0	-2.99	0.70	0.67	—	4.2	0.003	0.64	0.0	0.04	9.83	0.00	2.526	6.41	0.00	4.9	95.1	0.0	-0.40	1.10	0.72	0.72	—	21008	3166	4	0	0	0	0	logfile
✔	9ARG	43781	2025-05-21	2024-02-23	4.05	4.35	4.12	4.2	0.002	0.57	0.0	0.04	9.08	0.00	2.112	3.98	4.82	4.4	95.6	0.0	-2.99	0.70	0.67	—	4.2	0.003	0.66	0.0	0.04	9.96	0.00	2.559	7.20	0.00	5.6	94.4	0.0	-0.56	1.10	0.72	0.72	—	21008	3166	4	0	0	0	0	logfile
✔	9ARG	43781	2024-08-08	2024-02-23	4.05	4.35	4.12	4.2	0.002	0.57	0.0	0.04	9.08	0.00	2.112	3.98	4.82	4.4	95.6	0.0	-2.99	0.70	0.67	—	4.2	0.004	0.70	0.0	0.04	10.11	0.00	2.589	7.81	0.00	6.2	93.8	0.0	-0.80	1.12	0.73	0.73	—	21008	3166	4	0	0	0	0	logfile
✔	8YEX	39204	2025-01-14	2024-02-23	3.68	3.97	3.75	3.9	0.004	0.79	0.0	0.04	17.18	0.01	2.139	16.33	0.72	4.5	95.5	0.0	0.80	0.55	0.74	1.00	3.9	0.003	0.67	0.0	0.04	17.28	0.00	2.523	10.89	2.44	5.3	94.7	0.0	1.45	0.45	0.54	0.74	1.08	6532	784	2	0	0	0	0	logfile
✔	8YEX	39204	2025-02-11	2024-02-23	3.68	3.97	3.75	3.9	0.004	0.79	0.0	0.04	17.18	0.01	2.139	16.33	0.72	4.5	95.5	0.0	0.80	0.55	0.74	1.00	3.9	0.003	0.67	0.0	0.04	17.28	0.00	2.523	10.89	2.44	5.3	94.7	0.0	1.45	0.45	0.54	0.74	1.08	6532	784	2	0	0	0	0	logfile
✔	9ARJ	43784	2025-05-23	2024-02-23	3.4	3.36	2.79	3.2	0.003	0.48	0.0	0.05	11.64	0.00	2.207	8.67	3.19	5.1	94.8	0.1	0.38	0.79	0.81	3.60	3.2	0.003	0.55	0.0	0.04	14.11	0.00	2.277	7.61	2.97	5.2	94.7	0.0	0.34	1.16	0.84	0.85	3.10	24188	2982	3	0	0	0	0	logfile
✔	9ARU	43794	2025-05-29	2024-02-23	3.9	4.46	3.98	4.2	0.006	1.06	0.0	0.06	9.89	0.01	2.181	0.81	0.09	3.1	96.9	0.0	0.83	0.81	0.75	1.24	4.3	0.003	0.72	0.0	0.04	13.83	0.00	2.353	9.39	1.50	3.7	96.3	0.1	0.32	1.84	0.83	0.79	1.08	31926	3996	30	0	63	0	0	logfile
✔	8S5E	19733	2025-05-19	2024-02-23	3.1	3.27	2.16	3.3	0.017	0.99	0.0	0.05	16.83	0.01	1.762	2.70	4.21	2.5	97.5	0.0	-1.35	0.64	0.86	2.35	3.2	0.003	0.55	0.0	0.04	16.02	0.00	1.750	1.46	2.77	2.2	97.8	0.0	0.71	0.65	0.63	0.86	2.49	18508	1141	21	0	14	14	9135	logfile
✔	9ARL	43786	2025-05-23	2024-02-23	4.0	3.57	3.11	3.3	0.003	0.48	1.0	0.04	11.65	0.00	2.147	10.99	3.40	3.5	96.5	0.0	0.50	0.78	0.75	—	3.3	0.003	0.57	0.0	0.04	14.20	0.00	2.402	9.92	2.69	3.0	97.0	0.0	0.53	0.85	0.79	0.75	—	24054	2983	3	0	0	0	0	logfile
✔	8YEi	39196	2025-05-19	2024-02-22	2.93	3.28	3.07	21.0	0.004	0.70	0.0	0.05	13.13	0.01	2.280	6.96	0.00	3.2	96.8	0.0	-1.07	0.14	0.01	0.34	21.0	0.004	0.81	0.0	0.05	15.41	0.01	2.227	19.62	2.66	7.6	92.4	0.0	-1.83	0.97	0.26	0.19	0.34	18253	2327	7	0	0	0	0	logfile
✔	8YE9	39191	2024-12-30	2024-02-22	3.43	3.69	3.54	3.7	0.007	1.01	0.0	0.06	15.50	0.01	2.195	3.79	0.24	7.9	92.1	0.0	-4.35	0.73	0.75	2.64	3.7	0.002	0.60	0.0	0.04	17.43	0.00	2.488	4.52	2.17	4.0	96.0	0.0	-0.33	1.30	0.73	0.74	1.81	13559	1448	3	90	0	0	0	logfile
✔	8YE9	39191	2024-11-17	2024-02-22	3.43	3.69	3.54	3.7	0.007	1.01	0.0	0.06	15.50	0.01	2.195	3.79	0.24	7.9	92.1	0.0	-4.35	0.73	0.75	2.64	3.7	0.002	0.60	0.0	0.04	17.43	0.00	2.488	4.52	2.17	4.0	96.0	0.0	-0.33	1.30	0.73	0.74	1.81	13559	1448	3	90	0	0	0	logfile
✔	8YE9	39191	2024-10-12	2024-02-22	3.43	3.69	3.54	3.7	0.007	1.01	0.0	0.06	15.50	0.01	2.195	3.79	0.24	7.9	92.1	0.0	-4.35	0.73	0.75	2.64	3.7	0.002	0.60	0.0	0.04	17.43	0.00	2.488	4.52	2.17	4.0	96.0	0.0	-0.33	1.30	0.73	0.74	1.81	13559	1448	3	90	0	0	0	logfile
✔	8YE9	39191	2024-09-26	2024-02-22	3.43	3.69	3.54	3.7	0.007	1.01	0.0	0.06	15.50	0.01	2.195	3.79	0.24	7.9	92.1	0.0	-4.35	0.73	0.75	2.64	3.7	0.002	0.60	0.0	0.04	17.43	0.00	2.488	4.52	2.17	4.0	96.0	0.0	-0.33	1.30	0.73	0.74	1.81	13559	1448	3	90	0	0	0	logfile
✔	8YEo	39200	2024-08-08	2024-02-22	3.44	4.39	3.47	3.8	0.003	0.60	0.0	0.04	20.20	0.00	2.252	6.90	0.42	5.0	95.0	0.0	-0.97	0.92	0.85	2.26	3.8	0.003	0.61	0.0	0.04	20.07	0.00	2.473	7.75	2.39	5.1	94.9	0.0	-0.06	0.45	0.93	0.90	2.24	24197	2680	12	119	0	0	0	logfile
✔	8YEo	39200	2024-09-30	2024-02-22	3.44	4.39	3.47	3.8	0.003	0.60	0.0	0.04	20.20	0.00	2.252	6.90	0.42	5.0	95.0	0.0	-0.97	0.92	0.85	2.26	3.8	0.003	0.61	0.0	0.04	20.07	0.00	2.473	7.75	2.39	5.1	94.9	0.0	-0.06	0.45	0.93	0.90	2.24	24197	2680	12	119	0	0	0	logfile

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