Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8S4U	19716	2024-12-27	2024-02-22	3.09	3.17	2.95	3.1	0.006	0.65	1.0	0.05	14.85	0.01	2.272	7.16	0.24	4.2	95.8	0.0	-0.73	0.61	0.80	2.33	3.1	0.004	0.63	0.0	0.04	15.60	0.00	2.595	5.53	3.31	2.8	97.2	0.0	1.37	0.33	0.66	0.84	2.58	3980	502	3	0	1	0	0	logfile
✔	8S4U	19716	2024-10-09	2024-02-22	3.09	3.17	2.95	3.1	0.006	0.65	1.0	0.05	14.85	0.01	2.272	7.16	0.24	4.2	95.8	0.0	-0.73	0.61	0.80	2.33	3.1	0.004	0.63	0.0	0.04	15.60	0.00	2.595	5.53	3.31	2.8	97.2	0.0	1.37	0.33	0.66	0.84	2.58	3980	502	3	0	1	0	0	logfile
✔	8S4U	19716	2025-05-09	2024-02-22	3.09	3.17	2.96	3.1	0.006	0.65	1.0	0.05	14.85	0.01	2.272	7.16	0.24	4.2	95.8	0.0	-0.73	0.61	0.80	2.33	3.1	0.004	0.63	0.0	0.04	15.66	0.00	2.567	5.90	4.02	3.0	97.0	0.0	1.25	0.31	0.66	0.84	2.47	3980	502	3	0	1	0	0	logfile
✔	8YEF	39193	2025-05-19	2024-02-22	4.3	4.72	4.48	4.4	0.005	0.90	0.0	0.06	13.94	0.01	2.234	10.30	0.10	6.0	94.0	0.0	-1.67	0.86	0.83	—	4.4	0.004	0.69	0.0	0.04	14.09	0.00	2.399	18.29	0.00	6.6	93.4	0.0	-1.45	0.46	0.86	0.84	—	18074	2307	7	0	0	0	0	logfile
✘	8W2Q	43755	2025-01-23	2024-02-21	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20757	2307	7	82	1	0	0	logfile
✘	8W2Q	43755	2024-11-20	2024-02-21	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20757	2307	7	82	1	0	0	logfile
✘	8W2Q	43755	2025-05-21	2024-02-21	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20757	2306	7	82	2	0	0	logfile
✔	8YDX	39184	2025-05-24	2024-02-21	4.9	3.79	4.28	3.5	0.011	1.39	3.0	0.10	14.94	0.01	2.004	8.75	1.61	2.0	98.0	0.0	0.50	0.69	0.63	—	3.5	0.003	0.62	0.0	0.05	13.12	0.00	2.333	10.19	0.00	2.5	97.5	0.0	0.03	1.64	0.76	0.74	—	25471	3200	9	0	27	0	0	logfile
✔	8W2S	43757	2025-02-11	2024-02-21	3.4	3.65	3.41	3.5	0.004	0.89	0.0	0.05	20.85	0.01	2.289	7.86	0.00	4.8	95.2	0.0	-1.36	0.79	0.81	3.39	3.5	0.004	1.04	0.0	0.04	20.75	0.00	1.847	10.28	2.05	5.7	94.3	0.0	0.78	0.53	0.80	0.83	2.19	5688	339	2	137	0	0	0	logfile
✔	8W2S	43757	2025-05-10	2024-02-21	3.4	3.65	3.40	3.5	0.004	0.89	0.0	0.05	20.85	0.01	2.289	7.86	0.00	4.8	95.2	0.0	-1.36	0.79	0.81	3.39	3.5	0.004	1.04	0.0	0.04	20.75	0.00	1.847	10.28	2.05	5.7	94.3	0.0	0.78	0.53	0.80	0.83	2.19	5688	339	2	137	0	0	0	logfile
✔	8W2S	43757	2025-04-27	2024-02-21	3.4	3.65	3.40	3.5	0.004	0.89	0.0	0.05	20.85	0.01	2.289	7.86	0.00	4.8	95.2	0.0	-1.36	0.79	0.81	3.39	3.5	0.002	0.58	0.0	0.04	20.72	0.00	2.266	9.98	2.05	3.9	96.1	0.0	0.85	0.57	0.80	0.83	2.21	5688	339	2	137	0	0	0	logfile
✔	8W2S	43757	2025-03-06	2024-02-21	3.4	3.65	3.40	3.5	0.004	0.89	0.0	0.05	20.85	0.01	2.289	7.86	0.00	4.8	95.2	0.0	-1.36	0.79	0.81	3.39	3.5	0.002	0.58	0.0	0.04	20.72	0.00	2.266	9.98	2.05	3.9	96.1	0.0	0.85	0.57	0.80	0.83	2.21	5688	339	2	137	0	0	0	logfile
✔	8W35	43762	2025-02-10	2024-02-21	2.61	2.59	2.60	2.7	0.005	0.91	0.0	0.04	19.54	0.01	2.350	0.62	1.00	1.3	98.7	0.0	-1.65	0.47	0.62	3.21	2.7	0.002	0.47	0.0	0.03	20.23	0.00	2.570	2.90	1.00	2.2	97.8	0.0	1.54	0.39	0.64	0.75	2.79	2611	234	3	34	0	0	0	logfile
✔	8W35	43762	2025-01-13	2024-02-21	2.61	2.59	2.60	2.7	0.005	0.91	0.0	0.04	19.54	0.01	2.350	0.62	1.00	1.3	98.7	0.0	-1.65	0.47	0.62	3.21	2.7	0.002	0.47	0.0	0.03	20.23	0.00	2.570	2.90	1.00	2.2	97.8	0.0	1.54	0.39	0.64	0.75	2.79	2611	234	3	34	0	0	0	logfile
✔	8W35	43762	2024-08-02	2024-02-21	2.61	2.59	2.60	2.7	0.005	0.91	0.0	0.04	19.54	0.01	2.350	0.62	1.00	1.3	98.7	0.0	-1.65	0.47	0.62	3.21	2.7	0.003	0.54	0.0	0.03	20.35	0.00	2.570	2.90	3.00	2.6	97.4	0.0	1.23	0.36	0.65	0.76	2.96	2611	234	3	34	0	0	0	logfile
✔	8W35	43762	2024-09-23	2024-02-21	2.61	2.59	2.60	2.7	0.005	0.91	0.0	0.04	19.54	0.01	2.350	0.62	1.00	1.3	98.7	0.0	-1.65	0.47	0.62	3.21	2.7	0.003	0.54	0.0	0.03	20.35	0.00	2.570	2.90	3.00	2.6	97.4	0.0	1.23	0.36	0.65	0.76	2.96	2611	234	3	34	0	0	0	logfile
✔	8W35	43762	2024-10-09	2024-02-21	2.61	2.59	2.60	2.7	0.005	0.91	0.0	0.04	19.54	0.01	2.350	0.62	1.00	1.3	98.7	0.0	-1.65	0.47	0.62	3.21	2.7	0.003	0.54	0.0	0.03	20.35	0.00	2.570	2.90	3.00	2.6	97.4	0.0	1.23	0.36	0.65	0.76	2.96	2611	234	3	34	0	0	0	logfile
✔	8W35	43762	2024-12-27	2024-02-21	2.61	2.59	2.60	2.7	0.005	0.91	0.0	0.04	19.54	0.01	2.350	0.62	1.00	1.3	98.7	0.0	-1.65	0.47	0.62	3.21	2.7	0.003	0.54	0.0	0.03	20.35	0.00	2.570	2.90	3.00	2.6	97.4	0.0	1.23	0.36	0.65	0.76	2.96	2611	234	3	34	0	0	0	logfile
✔	8W35	43762	2024-11-13	2024-02-21	2.61	2.59	2.60	2.7	0.005	0.91	0.0	0.04	19.54	0.01	2.350	0.62	1.00	1.3	98.7	0.0	-1.65	0.47	0.62	3.21	2.7	0.003	0.54	0.0	0.03	20.35	0.00	2.570	2.90	3.00	2.6	97.4	0.0	1.23	0.36	0.65	0.76	2.96	2611	234	3	34	0	0	0	logfile
✔	8W35	43762	2025-05-09	2024-02-21	2.61	2.59	2.60	2.7	0.005	0.91	0.0	0.04	19.54	0.01	2.350	0.62	1.00	1.3	98.7	0.0	-1.65	0.47	0.62	3.21	2.7	0.002	0.47	0.0	0.03	20.23	0.00	2.570	2.90	1.00	2.2	97.8	0.0	1.54	0.39	0.64	0.75	2.79	2611	234	3	34	0	0	0	logfile

• ← previous
• Page 330 of 5030
• next →