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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8RC4 | 19047 | 2024-02-19 | 2023-12-06 | 3.1 | 4.01 | 2.99 | 7.5 | 0.005 | 0.80 | 0.0 | 0.05 | 15.58 | 0.01 | 2.017 | 2.88 | 0.10 | 3.9 | 96.0 | 0.0 | 0.73 | 0.69 | 0.31 | -0.03 | 2.5 | 0.004 | 0.80 | 0.0 | 0.05 | 16.44 | 0.00 | 1.436 | 21.80 | 1.52 | 4.4 | 95.6 | 0.0 | -0.06 | 1.35 | 0.82 | 0.64 | 0.61 | 78273 | 11105 | 18 | 0 | 4 | 0 | 0 | logfile |
✘ | 8RCF | 19051 | 2025-01-23 | 2023-12-06 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20202 | 2488 | 18 | 46 | 24 | 0 | 0 | logfile |
✔ | 8XBF | 38216 | 2024-08-10 | 2023-12-06 | 3.6 | 3.79 | 2.41 | 2.0 | 0.004 | 0.63 | 0.0 | 0.04 | 13.65 | 0.00 | 2.057 | 16.51 | 5.28 | 6.3 | 93.7 | 0.0 | -1.37 | 0.78 | 0.60 | 0.91 | 2.0 | 0.003 | 0.64 | 0.0 | 0.04 | 14.57 | 0.00 | 2.466 | 13.62 | 2.80 | 7.3 | 92.7 | 0.0 | -1.25 | 0.53 | 0.84 | 0.68 | 1.14 | 30099 | 3833 | 10 | 0 | 18 | 0 | 0 | logfile |
✔ | 8XBF | 38216 | 2024-07-25 | 2023-12-06 | 3.6 | 3.79 | 2.41 | 2.0 | 0.004 | 0.63 | 0.0 | 0.04 | 13.65 | 0.00 | 2.057 | 16.51 | 5.28 | 6.3 | 93.7 | 0.0 | -1.37 | 0.78 | 0.60 | 0.91 | 2.0 | 0.004 | 0.69 | 0.0 | 0.05 | 14.88 | 0.00 | 2.049 | 21.74 | 3.92 | 8.1 | 91.9 | 0.0 | -1.67 | 0.61 | 0.84 | 0.69 | 1.06 | 30099 | 3833 | 10 | 0 | 18 | 0 | 0 | logfile |
✘ | 8RCF | 19051 | 2024-11-19 | 2023-12-06 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20202 | 2488 | 18 | 46 | 24 | 0 | 0 | logfile |
✘ | 8RCF | 19051 | 2024-10-15 | 2023-12-06 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20202 | 2488 | 18 | 46 | 24 | 0 | 0 | logfile |
✘ | 8RCF | 19051 | 2024-09-28 | 2023-12-06 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20202 | 2488 | 18 | 46 | 24 | 0 | 0 | logfile |
✔ | 8XB8 | 38214 | 2024-09-24 | 2023-12-06 | 3.4 | 3.65 | 3.41 | 3.6 | 0.003 | 0.50 | 0.0 | 0.05 | 16.09 | 0.00 | 2.241 | 12.12 | 0.30 | 2.0 | 98.0 | 0.0 | 1.47 | 0.75 | 0.78 | 3.23 | 3.6 | 0.003 | 0.51 | 0.0 | 0.05 | 16.74 | 0.00 | 2.590 | 11.01 | 2.58 | 2.5 | 97.5 | 0.0 | 1.74 | 0.24 | 0.76 | 0.80 | 2.90 | 50400 | 5940 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XB8 | 38214 | 2025-01-14 | 2023-12-06 | 3.4 | 3.65 | 3.41 | 3.6 | 0.003 | 0.50 | 0.0 | 0.05 | 16.09 | 0.00 | 2.241 | 12.12 | 0.30 | 2.0 | 98.0 | 0.0 | 1.47 | 0.75 | 0.78 | 3.23 | 3.6 | 0.003 | 0.51 | 0.0 | 0.05 | 16.86 | 0.00 | 2.524 | 10.80 | 2.99 | 2.6 | 97.4 | 0.0 | 1.51 | 0.25 | 0.76 | 0.80 | 2.99 | 50400 | 5940 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XB8 | 38214 | 2024-10-10 | 2023-12-06 | 3.4 | 3.65 | 3.41 | 3.6 | 0.003 | 0.50 | 0.0 | 0.05 | 16.09 | 0.00 | 2.241 | 12.12 | 0.30 | 2.0 | 98.0 | 0.0 | 1.47 | 0.75 | 0.78 | 3.23 | 3.6 | 0.003 | 0.51 | 0.0 | 0.05 | 16.65 | 0.00 | 2.631 | 10.73 | 2.65 | 2.6 | 97.4 | 0.0 | 1.82 | 0.22 | 0.76 | 0.80 | 2.86 | 50400 | 5940 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XB8 | 38214 | 2024-11-18 | 2023-12-06 | 3.4 | 3.65 | 3.41 | 3.6 | 0.003 | 0.50 | 0.0 | 0.05 | 16.09 | 0.00 | 2.241 | 12.12 | 0.30 | 2.0 | 98.0 | 0.0 | 1.47 | 0.75 | 0.78 | 3.23 | 3.6 | 0.003 | 0.51 | 0.0 | 0.05 | 16.65 | 0.00 | 2.631 | 10.73 | 2.65 | 2.6 | 97.4 | 0.0 | 1.82 | 0.22 | 0.76 | 0.80 | 2.86 | 50400 | 5940 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XB8 | 38214 | 2024-12-27 | 2023-12-06 | 3.4 | 3.65 | 3.41 | 3.6 | 0.003 | 0.50 | 0.0 | 0.05 | 16.09 | 0.00 | 2.241 | 12.12 | 0.30 | 2.0 | 98.0 | 0.0 | 1.47 | 0.75 | 0.78 | 3.23 | 3.6 | 0.003 | 0.51 | 0.0 | 0.05 | 16.65 | 0.00 | 2.631 | 10.73 | 2.65 | 2.6 | 97.4 | 0.0 | 1.82 | 0.22 | 0.76 | 0.80 | 2.86 | 50400 | 5940 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 8V8S | 43044 | 2025-03-11 | 2023-12-06 | 2.2 | 2.62 | 2.16 | 2.5 | 0.002 | 0.47 | 0.0 | 0.04 | 14.02 | 0.00 | 2.203 | 6.43 | 0.00 | 3.2 | 96.8 | 0.0 | 0.33 | 0.63 | 0.78 | 4.97 | 2.5 | 0.003 | 0.60 | 0.0 | 0.04 | 14.43 | 0.00 | 2.646 | 5.60 | 2.87 | 3.6 | 96.4 | 0.0 | 1.99 | 1.60 | 0.64 | 0.78 | 4.23 | 6717 | 892 | 8 | 0 | 0 | 101 | 0 | logfile |
✔ | 8V8S | 43044 | 2025-01-14 | 2023-12-06 | 2.2 | 2.62 | 2.16 | 2.5 | 0.002 | 0.47 | 0.0 | 0.04 | 14.02 | 0.00 | 2.203 | 6.43 | 0.00 | 3.2 | 96.8 | 0.0 | 0.33 | 0.63 | 0.78 | 4.97 | 2.5 | 0.003 | 0.60 | 0.0 | 0.04 | 14.48 | 0.00 | 2.645 | 5.60 | 2.16 | 3.6 | 96.4 | 0.0 | 2.00 | 1.59 | 0.64 | 0.78 | 4.14 | 6717 | 892 | 8 | 0 | 0 | 101 | 0 | logfile |
✔ | 8V8S | 43044 | 2025-02-11 | 2023-12-06 | 2.2 | 2.62 | 2.16 | 2.5 | 0.002 | 0.47 | 0.0 | 0.04 | 14.02 | 0.00 | 2.203 | 6.43 | 0.00 | 3.2 | 96.8 | 0.0 | 0.33 | 0.63 | 0.78 | 4.97 | 2.5 | 0.003 | 0.60 | 0.0 | 0.04 | 14.48 | 0.00 | 2.645 | 5.60 | 2.16 | 3.6 | 96.4 | 0.0 | 2.00 | 1.59 | 0.64 | 0.78 | 4.14 | 6717 | 892 | 8 | 0 | 0 | 101 | 0 | logfile |
✔ | 8V8S | 43044 | 2024-12-27 | 2023-12-06 | 2.2 | 2.62 | 2.16 | 2.5 | 0.002 | 0.47 | 0.0 | 0.04 | 14.02 | 0.00 | 2.203 | 6.43 | 0.00 | 3.2 | 96.8 | 0.0 | 0.33 | 0.63 | 0.78 | 4.97 | 2.5 | 0.003 | 0.62 | 0.0 | 0.04 | 14.32 | 0.00 | 2.640 | 5.38 | 2.30 | 3.2 | 96.8 | 0.0 | 1.89 | 1.59 | 0.65 | 0.78 | 4.29 | 6717 | 892 | 8 | 0 | 0 | 101 | 0 | logfile |
✘ | 8RCD | 19050 | 2024-09-28 | 2023-12-06 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19680 | 2480 | 17 | 23 | 24 | 0 | 0 | logfile |
✘ | 8RCD | 19050 | 2024-10-15 | 2023-12-06 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19680 | 2480 | 17 | 23 | 24 | 0 | 0 | logfile |
✘ | 8RCD | 19050 | 2024-11-19 | 2023-12-06 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19680 | 2480 | 17 | 23 | 24 | 0 | 0 | logfile |
✘ | 8RCD | 19050 | 2025-01-23 | 2023-12-06 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19680 | 2480 | 17 | 23 | 24 | 0 | 0 | logfile |