Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Y3T	38898	2025-01-13	2024-01-29	2.61	2.83	2.38	2.8	0.008	0.72	0.0	0.05	12.61	0.00	2.231	9.51	0.00	3.5	96.5	0.0	0.24	0.44	0.80	4.67	2.8	0.004	0.58	0.0	0.05	16.32	0.00	2.660	6.43	2.06	1.7	98.3	0.0	0.95	1.04	0.46	0.83	3.79	1790	238	2	0	0	0	0	logfile
✔	8Y3T	38898	2025-03-05	2024-01-29	2.61	2.83	2.38	2.8	0.008	0.72	0.0	0.05	12.61	0.00	2.231	9.51	0.00	3.5	96.5	0.0	0.24	0.44	0.80	4.67	2.8	0.003	0.58	0.0	0.04	16.38	0.00	2.666	6.99	2.06	0.0	100.0	0.0	1.17	1.05	0.45	0.82	3.53	1790	238	2	0	0	0	0	logfile
✔	8VUS	43538	2024-09-30	2024-01-29	3.99	4.28	4.05	4.1	0.004	0.67	0.0	0.04	16.76	0.00	2.100	12.56	0.34	13.2	86.4	0.4	-2.35	0.82	0.81	1.49	4.1	0.005	0.74	0.0	0.05	17.07	0.00	2.377	9.86	5.72	14.0	85.6	0.4	-2.15	0.31	0.82	0.81	1.39	25006	3475	8	0	0	0	0	logfile
✔	8Y3F	38880	2025-05-20	2024-01-29	4.54	4.30	4.42	4.1	0.004	0.75	0.0	0.04	29.36	0.01	1.966	17.14	0.00	1.1	98.9	0.0	1.03	0.78	0.63	—	4.1	0.005	0.74	0.0	0.04	29.91	0.01	2.011	18.31	0.00	2.8	97.2	0.0	0.63	1.77	0.85	0.77	—	20173	1247	16	500	0	0	0	logfile
✔	8Y3R	38896	2024-10-13	2024-01-29	3.48	3.48	3.22	3.6	0.003	0.62	0.0	0.05	13.77	0.01	2.188	9.33	0.00	4.3	95.5	0.2	-1.23	0.62	0.71	1.52	3.5	0.006	0.90	2.0	0.05	15.86	0.01	2.207	7.75	3.01	4.7	95.2	0.1	-0.90	0.62	0.72	0.76	1.88	15735	2001	9	0	0	0	0	logfile
✔	8Y3N	38892	2025-02-11	2024-01-29	3.8	4.11	3.77	4.1	0.007	0.82	0.0	0.05	13.36	0.01	2.382	11.92	0.00	11.9	88.1	0.0	-3.00	0.45	0.80	3.56	4.2	0.005	0.71	0.0	0.05	15.55	0.01	2.590	8.67	1.97	10.5	89.5	0.0	-1.61	1.03	0.43	0.79	3.15	3694	494	4	0	0	0	0	logfile
✔	8Y3N	38892	2025-05-09	2024-01-29	3.8	4.11	3.76	4.1	0.007	0.82	0.0	0.05	13.36	0.01	2.382	11.92	0.00	11.9	88.1	0.0	-3.00	0.45	0.80	3.56	4.1	0.005	0.71	0.0	0.05	15.55	0.01	2.590	8.67	1.97	10.5	89.5	0.0	-1.61	1.03	0.43	0.79	3.15	3694	494	4	0	0	0	0	logfile
✔	8Y3N	38892	2024-11-14	2024-01-29	3.8	4.11	3.77	4.1	0.007	0.82	0.0	0.05	13.36	0.01	2.382	11.92	0.00	11.9	88.1	0.0	-3.00	0.45	0.80	3.56	4.1	0.003	0.68	0.0	0.04	15.87	0.01	2.411	7.58	1.48	4.6	95.4	0.0	-1.32	1.04	0.42	0.78	2.81	3694	494	4	0	0	0	0	logfile
✔	8Y3N	38892	2024-12-27	2024-01-29	3.8	4.11	3.77	4.1	0.007	0.82	0.0	0.05	13.36	0.01	2.382	11.92	0.00	11.9	88.1	0.0	-3.00	0.45	0.80	3.56	4.1	0.003	0.68	0.0	0.04	15.87	0.01	2.411	7.58	1.48	4.6	95.4	0.0	-1.32	1.04	0.42	0.78	2.81	3694	494	4	0	0	0	0	logfile
✔	8Y3N	38892	2025-01-13	2024-01-29	3.8	4.11	3.77	4.1	0.007	0.82	0.0	0.05	13.36	0.01	2.382	11.92	0.00	11.9	88.1	0.0	-3.00	0.45	0.80	3.56	4.2	0.005	0.71	0.0	0.05	15.55	0.01	2.590	8.67	1.97	10.5	89.5	0.0	-1.61	1.03	0.43	0.79	3.15	3694	494	4	0	0	0	0	logfile
✔	8Y3R	38896	2024-11-18	2024-01-29	3.48	3.48	3.22	3.6	0.003	0.62	0.0	0.05	13.77	0.01	2.188	9.33	0.00	4.3	95.5	0.2	-1.23	0.62	0.71	1.52	3.5	0.006	0.90	2.0	0.05	15.86	0.01	2.207	7.75	3.01	4.7	95.2	0.1	-0.90	0.62	0.72	0.76	1.88	15735	2001	9	0	0	0	0	logfile
✔	8Y3N	38892	2025-03-05	2024-01-29	3.8	4.11	3.76	4.1	0.007	0.82	0.0	0.05	13.36	0.01	2.382	11.92	0.00	11.9	88.1	0.0	-3.00	0.45	0.80	3.56	4.1	0.003	0.63	0.0	0.04	15.51	0.01	2.604	8.67	1.72	5.4	94.6	0.0	-1.26	1.04	0.42	0.78	3.56	3694	494	4	0	0	0	0	logfile
✔	8VUN	43534	2025-05-26	2024-01-29	4.01	4.40	4.14	4.2	0.004	0.72	0.0	0.04	16.75	0.00	2.175	13.89	0.47	13.1	86.6	0.4	-1.46	0.74	0.78	—	4.2	0.004	0.72	0.0	0.04	13.20	0.00	2.507	10.87	0.00	12.9	86.8	0.3	-1.52	0.50	0.74	0.78	—	28765	3998	8	0	0	0	0	logfile
✔	8Y3R	38896	2024-09-27	2024-01-29	3.48	3.48	3.22	3.6	0.003	0.62	0.0	0.05	13.77	0.01	2.188	9.33	0.00	4.3	95.5	0.2	-1.23	0.62	0.71	1.52	3.5	0.006	0.90	2.0	0.05	15.86	0.01	2.207	7.75	3.01	4.7	95.2	0.1	-0.90	0.62	0.72	0.76	1.88	15735	2001	9	0	0	0	0	logfile
✔	8Y3W	38902	2025-05-30	2024-01-29	3.49	3.27	—	2.2	0.006	1.14	0.0	0.06	11.85	0.01	2.146	6.46	0.49	9.4	90.0	0.6	-4.65	0.76	0.58	0.59	2.2	0.003	0.74	0.0	0.04	15.07	0.00	2.398	10.78	0.78	7.2	92.5	0.3	-0.75	1.65	0.80	0.68	1.22	33586	4034	6	0	0	0	0	logfile
✔	8Y3R	38896	2024-12-31	2024-01-29	3.48	3.48	3.22	3.6	0.003	0.62	0.0	0.05	13.77	0.01	2.188	9.33	0.00	4.3	95.5	0.2	-1.23	0.62	0.71	1.52	3.5	0.006	0.90	2.0	0.05	15.86	0.01	2.207	7.75	3.01	4.7	95.2	0.1	-0.90	0.62	0.72	0.76	1.88	15735	2001	9	0	0	0	0	logfile
✔	8Y3R	38896	2025-05-17	2024-01-29	3.48	3.48	3.22	3.6	0.003	0.62	0.0	0.05	13.77	0.01	2.188	9.33	0.00	4.3	95.5	0.2	-1.23	0.62	0.71	1.52	3.5	0.003	0.66	0.0	0.05	15.79	0.00	2.235	6.88	3.36	4.6	95.4	0.1	-0.87	0.62	0.71	0.75	1.85	15735	2001	9	0	0	0	0	logfile
✔	8Y3Y	38907	2025-05-30	2024-01-29	3.33	2.99	—	2.2	0.007	1.11	0.0	0.06	11.18	0.01	2.168	6.18	0.67	8.4	91.2	0.4	-4.50	0.71	0.48	0.56	2.1	0.003	0.74	1.0	0.04	14.77	0.00	2.361	12.16	1.24	8.2	91.8	0.0	-1.15	1.95	0.79	0.66	1.03	33586	4034	6	0	0	0	0	logfile
✔	8Y3R	38896	2025-01-20	2024-01-29	3.48	3.48	3.22	3.6	0.003	0.62	0.0	0.05	13.77	0.01	2.188	9.33	0.00	4.3	95.5	0.2	-1.23	0.62	0.71	1.52	3.5	0.005	0.91	3.0	0.06	15.72	0.01	2.067	7.30	3.36	4.2	95.7	0.2	-0.81	0.60	0.71	0.75	1.92	15735	2001	9	0	0	0	0	logfile
✔	8Y3o	38893	2024-11-18	2024-01-29	2.75	3.08	2.94	3.1	0.003	0.75	0.0	0.05	13.07	0.01	2.217	6.58	0.00	4.1	95.9	0.0	-1.28	0.64	0.76	3.15	3.1	0.008	0.75	0.0	0.05	16.11	0.01	2.453	10.90	2.51	5.5	94.5	0.0	-1.44	0.38	0.62	0.78	3.23	17058	2163	9	0	0	0	0	logfile

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