Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Y3Q	38895	2024-11-18	2024-01-29	2.98	3.14	2.96	3.2	0.003	0.55	0.0	0.04	12.96	0.00	2.176	4.85	0.00	3.3	96.7	0.0	-0.01	0.67	0.78	3.59	3.2	0.004	0.62	0.0	0.05	15.56	0.00	2.544	4.40	3.25	3.6	96.4	0.0	0.33	0.52	0.71	0.84	3.38	15738	2016	9	0	0	0	0	logfile
✔	8Y3Q	38895	2024-12-31	2024-01-29	2.98	3.14	2.96	3.2	0.003	0.55	0.0	0.04	12.96	0.00	2.176	4.85	0.00	3.3	96.7	0.0	-0.01	0.67	0.78	3.59	3.2	0.004	0.62	0.0	0.05	15.56	0.00	2.544	4.40	3.25	3.6	96.4	0.0	0.33	0.52	0.71	0.84	3.38	15738	2016	9	0	0	0	0	logfile
✔	8VUS	43538	2025-05-24	2024-01-29	3.99	4.28	4.05	4.1	0.004	0.67	0.0	0.04	16.76	0.00	2.100	12.56	0.34	13.2	86.4	0.4	-2.35	0.82	0.81	1.49	4.1	0.011	0.97	0.0	0.05	17.23	0.01	2.449	14.84	6.58	17.5	81.9	0.6	-2.80	0.92	0.83	0.82	1.38	25006	3475	8	0	0	0	0	logfile
✔	8VUS	43538	2024-09-30	2024-01-29	3.99	4.28	4.05	4.1	0.004	0.67	0.0	0.04	16.76	0.00	2.100	12.56	0.34	13.2	86.4	0.4	-2.35	0.82	0.81	1.49	4.1	0.005	0.74	0.0	0.05	17.07	0.00	2.377	9.86	5.72	14.0	85.6	0.4	-2.15	0.31	0.82	0.81	1.39	25006	3475	8	0	0	0	0	logfile
✔	8Y3Y	38907	2025-05-30	2024-01-29	3.33	2.99	—	2.2	0.007	1.11	0.0	0.06	11.18	0.01	2.168	6.18	0.67	8.4	91.2	0.4	-4.50	0.71	0.48	0.56	2.1	0.003	0.74	1.0	0.04	14.77	0.00	2.361	12.16	1.24	8.2	91.8	0.0	-1.15	1.95	0.79	0.66	1.03	33586	4034	6	0	0	0	0	logfile
✔	8VUH	43530	2024-09-30	2024-01-29	4.42	4.85	4.53	4.4	0.010	0.73	0.0	0.04	13.20	0.01	2.020	19.56	0.05	13.0	86.7	0.3	-1.76	0.62	0.47	—	4.4	0.004	0.71	0.0	0.04	13.01	0.00	2.327	16.47	0.05	11.9	87.8	0.3	-1.63	0.95	0.66	0.66	—	25161	3587	8	0	0	0	0	logfile
✔	8VUJ	43531	2025-05-24	2024-01-29	3.92	4.21	3.99	4.1	0.002	0.58	0.0	0.04	16.85	0.00	2.190	8.16	0.40	11.1	88.6	0.3	-1.13	0.77	0.83	1.10	4.1	0.003	0.63	0.0	0.04	17.00	0.00	2.512	5.94	4.31	11.2	88.5	0.3	-0.97	0.25	0.77	0.83	1.12	25184	3588	8	0	0	0	0	logfile
✔	8VUJ	43531	2024-09-30	2024-01-29	3.92	4.21	3.99	4.1	0.002	0.58	0.0	0.04	16.85	0.00	2.190	8.16	0.40	11.1	88.6	0.3	-1.13	0.77	0.83	1.10	4.1	0.003	0.63	0.0	0.04	17.05	0.00	2.507	5.98	4.80	11.2	88.4	0.4	-0.95	0.25	0.77	0.83	1.10	25184	3588	8	0	0	0	0	logfile
✔	8Y3Q	38895	2024-09-27	2024-01-29	2.98	3.14	2.96	3.2	0.003	0.55	0.0	0.04	12.96	0.00	2.176	4.85	0.00	3.3	96.7	0.0	-0.01	0.67	0.78	3.59	3.2	0.004	0.62	0.0	0.05	15.56	0.00	2.544	4.40	3.25	3.6	96.4	0.0	0.33	0.52	0.71	0.84	3.38	15738	2016	9	0	0	0	0	logfile
✔	8Y3Q	38895	2025-05-17	2024-01-29	2.98	3.14	2.96	3.2	0.003	0.55	0.0	0.04	12.96	0.00	2.176	4.85	0.00	3.3	96.7	0.0	-0.01	0.67	0.78	3.59	3.2	0.003	0.56	0.0	0.04	15.40	0.00	2.575	4.17	2.85	3.4	96.6	0.0	0.53	0.51	0.72	0.84	3.09	15738	2016	9	0	0	0	0	logfile
✘	8VUW	43542	2025-05-15	2024-01-29	3.19	2.92	3.06	3.0	0.007	0.98	0.0	0.06	17.62	0.00	2.280	7.02	0.36	4.5	95.5	0.0	-1.89	0.66	0.80	4.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13055	1560	10	0	5	0	0	logfile
✘	8VUW	43542	2025-01-18	2024-01-29	3.19	2.92	3.07	3.0	0.007	0.98	0.0	0.06	17.62	0.00	2.280	7.02	0.36	4.5	95.5	0.0	-1.89	0.66	0.80	4.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13055	1560	10	0	5	0	0	logfile
✔	8VUW	43542	2024-02-15	2024-01-29	3.19	2.92	3.07	3.0	0.007	0.98	0.0	0.06	17.62	0.00	2.280	7.02	0.36	4.5	95.5	0.0	-1.89	0.66	0.80	4.06	3.0	0.003	0.52	0.0	0.04	16.49	0.00	2.153	8.86	1.43	3.3	96.7	0.0	-0.70	0.31	0.65	0.82	3.30	13055	1560	10	0	5	0	0	logfile
✔	8VUW	43542	2024-08-05	2024-01-29	3.19	2.92	3.07	3.0	0.007	0.98	0.0	0.06	17.62	0.00	2.280	7.02	0.36	4.5	95.5	0.0	-1.89	0.66	0.80	4.06	3.0	0.003	0.57	0.0	0.04	16.53	0.00	2.591	7.13	1.15	4.1	95.9	0.0	-0.57	0.35	0.65	0.82	3.18	13055	1560	10	0	5	0	0	logfile
✔	8VUW	43542	2024-09-26	2024-01-29	3.19	2.92	3.07	3.0	0.007	0.98	0.0	0.06	17.62	0.00	2.280	7.02	0.36	4.5	95.5	0.0	-1.89	0.66	0.80	4.06	3.0	0.003	0.57	0.0	0.04	16.53	0.00	2.591	7.13	1.15	4.1	95.9	0.0	-0.57	0.35	0.65	0.82	3.18	13055	1560	10	0	5	0	0	logfile
✔	8VUW	43542	2024-10-12	2024-01-29	3.19	2.92	3.07	3.0	0.007	0.98	0.0	0.06	17.62	0.00	2.280	7.02	0.36	4.5	95.5	0.0	-1.89	0.66	0.80	4.06	3.0	0.003	0.57	0.0	0.04	16.53	0.00	2.591	7.13	1.15	4.1	95.9	0.0	-0.57	0.35	0.65	0.82	3.18	13055	1560	10	0	5	0	0	logfile
✔	8VUW	43542	2024-11-17	2024-01-29	3.19	2.92	3.07	3.0	0.007	0.98	0.0	0.06	17.62	0.00	2.280	7.02	0.36	4.5	95.5	0.0	-1.89	0.66	0.80	4.06	3.0	0.003	0.57	0.0	0.04	16.53	0.00	2.591	7.13	1.15	4.1	95.9	0.0	-0.57	0.35	0.65	0.82	3.18	13055	1560	10	0	5	0	0	logfile
✔	8VUW	43542	2024-12-30	2024-01-29	3.19	2.92	3.07	3.0	0.007	0.98	0.0	0.06	17.62	0.00	2.280	7.02	0.36	4.5	95.5	0.0	-1.89	0.66	0.80	4.06	3.0	0.003	0.57	0.0	0.04	16.53	0.00	2.591	7.13	1.15	4.1	95.9	0.0	-0.57	0.35	0.65	0.82	3.18	13055	1560	10	0	5	0	0	logfile
✔	8VUE	43529	2025-05-28	2024-01-29	3.59	3.93	3.71	3.8	0.007	0.95	9.0	0.06	15.99	0.01	1.828	15.02	4.98	6.1	93.5	0.3	-2.26	0.79	0.84	2.25	3.8	0.003	0.66	0.0	0.04	15.84	0.00	2.448	7.86	2.08	3.3	96.7	0.0	0.09	1.72	0.78	0.84	2.14	21501	2754	15	0	3	0	0	logfile
✔	8VUE	43529	2024-08-11	2024-01-29	3.59	3.93	3.71	3.8	0.007	0.94	9.0	0.06	15.99	0.01	1.828	15.02	4.98	6.1	93.5	0.3	-2.26	0.79	0.84	2.25	3.8	0.004	0.67	0.0	0.04	15.91	0.00	2.434	8.22	2.91	3.9	96.1	0.0	0.06	1.72	0.78	0.84	2.21	21501	2754	15	0	3	0	0	logfile

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