Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Y3V	38900	2024-12-27	2024-01-29	3.46	3.65	2.37	3.7	0.006	0.73	0.0	0.05	12.74	0.01	2.342	6.61	0.00	11.1	88.9	0.0	-2.06	0.48	0.85	4.09	3.7	0.004	0.65	0.0	0.05	15.02	0.00	2.567	4.89	1.46	8.5	91.5	0.0	-0.71	0.31	0.46	0.84	3.22	3785	513	4	0	0	0	0	logfile
✔	8Y3V	38900	2025-03-05	2024-01-29	3.46	3.65	2.21	3.6	0.006	0.73	0.0	0.05	12.74	0.01	2.342	6.61	0.00	11.1	88.9	0.0	-2.06	0.48	0.85	4.09	3.7	0.004	0.66	0.0	0.05	15.13	0.00	2.599	4.76	1.46	8.1	91.9	0.0	-0.57	0.27	0.46	0.84	3.33	3785	513	4	0	0	0	0	logfile
✔	8Y3V	38900	2025-02-11	2024-01-29	3.46	3.65	2.37	3.7	0.006	0.73	0.0	0.05	12.74	0.01	2.342	6.61	0.00	11.1	88.9	0.0	-2.06	0.48	0.85	4.09	3.7	0.003	0.63	0.0	0.05	15.12	0.00	2.572	5.29	1.70	7.9	92.1	0.0	-0.73	0.28	0.45	0.84	3.52	3785	513	4	0	0	0	0	logfile
✔	8Y3V	38900	2025-04-26	2024-01-29	3.46	3.65	2.21	3.6	0.006	0.73	0.0	0.05	12.74	0.01	2.342	6.61	0.00	11.1	88.9	0.0	-2.06	0.48	0.85	4.09	3.7	0.004	0.66	0.0	0.05	15.13	0.00	2.599	4.76	1.46	8.1	91.9	0.0	-0.57	0.27	0.46	0.84	3.33	3785	513	4	0	0	0	0	logfile
✔	8Y3V	38900	2025-05-09	2024-01-29	3.46	3.65	2.21	3.6	0.006	0.73	0.0	0.05	12.74	0.01	2.342	6.61	0.00	11.1	88.9	0.0	-2.06	0.48	0.85	4.09	3.7	0.003	0.63	0.0	0.05	15.12	0.00	2.572	5.29	1.70	7.9	92.1	0.0	-0.73	0.28	0.45	0.84	3.52	3785	513	4	0	0	0	0	logfile
✔	8Y3V	38900	2024-11-14	2024-01-29	3.46	3.65	2.37	3.7	0.006	0.73	0.0	0.05	12.74	0.01	2.342	6.61	0.00	11.1	88.9	0.0	-2.06	0.48	0.85	4.09	3.7	0.004	0.65	0.0	0.05	15.02	0.00	2.567	4.89	1.46	8.5	91.5	0.0	-0.71	0.31	0.46	0.84	3.22	3785	513	4	0	0	0	0	logfile
✘	8VUR	43537	2025-01-26	2024-01-29	3.84	4.14	3.91	4.1	0.003	0.60	0.0	0.04	16.37	0.00	2.140	8.53	0.42	11.6	88.0	0.4	-1.26	0.75	0.81	1.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24978	3587	6	0	0	0	0	logfile
✔	8VUT	43539	2025-05-26	2024-01-29	3.7	3.95	3.75	3.9	0.004	0.63	0.0	0.04	16.55	0.00	2.087	8.94	0.40	12.2	87.3	0.5	-1.03	0.72	0.73	1.00	3.9	0.002	0.60	0.0	0.04	16.88	0.00	2.494	6.41	5.23	10.1	89.4	0.5	-0.52	0.29	0.74	0.82	0.85	28819	3998	8	0	0	0	0	logfile
✔	8VUR	43537	2024-09-30	2024-01-29	3.84	4.14	3.91	4.1	0.003	0.60	0.0	0.04	16.37	0.00	2.140	8.53	0.42	11.6	88.0	0.4	-1.26	0.75	0.81	1.36	4.1	0.003	0.61	0.0	0.04	16.62	0.00	2.491	6.14	5.89	10.8	88.9	0.3	-0.86	0.90	0.75	0.83	0.95	24978	3587	6	0	0	0	0	logfile
✔	8VUR	43537	2025-05-24	2024-01-29	3.84	4.14	3.91	4.1	0.003	0.61	0.0	0.04	16.37	0.00	2.140	8.53	0.42	11.6	88.0	0.4	-1.26	0.75	0.81	1.36	4.1	0.003	0.63	0.0	0.04	16.60	0.00	2.488	6.37	5.47	10.5	89.2	0.3	-0.77	0.28	0.75	0.83	0.98	24978	3587	6	0	0	0	0	logfile
✔	8Y32	38866	2025-03-11	2024-01-28	4.13	3.53	3.36	3.5	0.004	0.70	0.0	0.05	21.05	0.01	2.120	9.81	0.72	6.5	93.3	0.3	-1.08	0.63	0.72	—	3.5	0.003	0.68	0.0	0.05	14.45	0.00	2.286	6.15	0.00	5.7	94.0	0.3	-0.87	1.62	0.62	0.70	—	6571	791	4	0	8	0	0	logfile
✔	8Y32	38866	2024-12-27	2024-01-28	4.13	3.53	3.37	3.5	0.004	0.70	0.0	0.05	21.05	0.01	2.120	9.81	0.72	6.5	93.3	0.3	-1.08	0.63	0.72	—	3.5	0.003	0.62	0.0	0.04	14.61	0.00	2.411	5.69	0.14	5.3	94.4	0.3	-0.63	1.63	0.62	0.70	—	6571	791	4	0	8	0	0	logfile
✔	8Y32	38866	2025-05-10	2024-01-28	4.13	3.53	3.36	3.5	0.004	0.75	0.0	0.05	21.05	0.01	2.120	9.81	0.72	6.5	93.3	0.3	-1.08	0.63	0.72	—	3.5	0.003	0.65	0.0	0.04	14.62	0.00	2.453	5.69	0.14	5.3	94.4	0.3	-0.68	0.57	0.63	0.70	—	6571	791	4	0	8	0	0	logfile
✔	8Y32	38866	2025-02-11	2024-01-28	4.13	3.53	3.37	3.5	0.004	0.70	0.0	0.05	21.05	0.01	2.120	9.81	0.72	6.5	93.3	0.3	-1.08	0.63	0.72	—	3.5	0.003	0.65	0.0	0.04	14.72	0.00	2.321	6.46	0.14	6.0	93.8	0.3	-0.89	1.62	0.62	0.70	—	6571	791	4	0	8	0	0	logfile
✔	8Y32	38866	2025-01-14	2024-01-28	4.13	3.53	3.37	3.5	0.004	0.70	0.0	0.05	21.05	0.01	2.120	9.81	0.72	6.5	93.3	0.3	-1.08	0.63	0.72	—	3.5	0.003	0.65	0.0	0.04	14.72	0.00	2.321	6.46	0.14	6.0	93.8	0.3	-0.89	1.62	0.62	0.70	—	6571	791	4	0	8	0	0	logfile
✔	8Y32	38866	2025-04-27	2024-01-28	4.13	3.53	3.36	3.5	0.004	0.75	0.0	0.05	21.05	0.01	2.120	9.81	0.72	6.5	93.3	0.3	-1.08	0.63	0.72	—	3.5	0.003	0.66	0.0	0.04	14.56	0.00	2.440	6.93	0.00	5.6	94.2	0.3	-0.85	0.55	0.63	0.70	—	6571	791	4	0	8	0	0	logfile
✔	8VU5	43526	2025-03-06	2024-01-28	3.39	3.60	3.36	3.6	0.005	0.81	1.0	0.05	17.68	0.01	2.195	16.26	1.44	7.6	92.4	0.0	-1.20	0.67	0.73	1.46	3.6	0.003	0.67	0.0	0.04	17.95	0.00	2.521	13.82	4.33	6.9	93.1	0.0	-0.86	0.34	0.66	0.73	1.99	5616	719	3	0	0	0	0	logfile
✔	8VU5	43526	2025-01-14	2024-01-28	3.39	3.60	3.36	3.6	0.005	0.81	1.0	0.05	17.68	0.01	2.195	16.26	1.44	7.6	92.4	0.0	-1.20	0.67	0.73	1.46	3.6	0.004	0.68	0.0	0.04	17.95	0.00	2.500	14.36	3.85	6.6	93.4	0.0	-1.01	0.32	0.66	0.73	1.96	5616	719	3	0	0	0	0	logfile
✔	8VU5	43526	2025-05-10	2024-01-28	3.39	3.60	3.36	3.6	0.005	0.81	1.0	0.05	17.68	0.01	2.195	16.26	1.44	7.6	92.4	0.0	-1.20	0.67	0.73	1.46	3.6	0.005	0.70	0.0	0.04	18.04	0.01	2.510	15.08	4.49	6.9	93.1	0.0	-1.09	0.30	0.67	0.74	1.93	5616	719	3	0	0	0	0	logfile
✔	8VU5	43526	2025-04-27	2024-01-28	3.39	3.60	3.36	3.6	0.005	0.81	1.0	0.05	17.68	0.01	2.195	16.26	1.44	7.6	92.4	0.0	-1.20	0.67	0.73	1.46	3.6	0.003	0.68	0.0	0.04	18.02	0.01	2.516	14.09	4.65	7.1	92.9	0.0	-0.90	0.33	0.67	0.73	1.65	5616	719	3	0	0	0	0	logfile

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