Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Y1P	38842	2025-05-16	2024-01-25	3.45	3.65	3.48	3.6	0.016	1.49	0.0	0.08	15.64	0.01	2.087	6.84	0.00	11.5	88.5	0.0	-4.54	0.64	0.74	2.37	3.6	0.005	0.76	0.0	0.04	16.07	0.01	2.369	7.16	0.81	9.4	90.6	0.0	-1.94	0.33	0.67	0.76	1.70	14041	1800	2	0	2	0	0	logfile
✔	8RT5	19479	2025-01-21	2024-01-25	2.69	3.93	2.72	3.3	0.007	0.79	0.0	0.05	12.35	0.01	1.988	9.86	0.00	1.5	98.5	0.0	0.37	0.80	0.74	3.88	3.3	0.005	0.92	0.0	0.06	16.25	0.00	2.458	12.37	1.26	0.8	99.2	0.0	0.21	3.12	0.90	0.89	2.75	17456	2144	32	0	0	0	0	logfile
✔	8RT5	19479	2024-11-18	2024-01-25	2.69	3.93	2.72	3.3	0.007	0.79	0.0	0.05	12.35	0.01	1.988	9.86	0.00	1.5	98.5	0.0	0.37	0.80	0.74	3.88	3.3	0.006	1.00	0.0	0.06	16.09	0.00	2.462	14.19	1.21	0.4	99.6	0.0	0.15	3.13	0.89	0.89	2.91	17456	2144	32	0	0	0	0	logfile
✔	8RT5	19479	2024-10-14	2024-01-25	2.69	3.93	2.72	3.3	0.007	0.79	0.0	0.05	12.35	0.01	1.988	9.86	0.00	1.5	98.5	0.0	0.37	0.80	0.74	3.88	3.3	0.006	1.00	0.0	0.06	16.09	0.00	2.462	14.19	1.21	0.4	99.6	0.0	0.15	3.13	0.89	0.89	2.91	17456	2144	32	0	0	0	0	logfile
✔	8RT5	19479	2024-09-27	2024-01-25	2.69	3.93	2.72	3.3	0.007	0.79	0.0	0.05	12.35	0.01	1.988	9.86	0.00	1.5	98.5	0.0	0.37	0.80	0.74	3.88	3.3	0.006	1.00	0.0	0.06	16.09	0.00	2.462	14.19	1.21	0.4	99.6	0.0	0.15	3.13	0.89	0.89	2.91	17456	2144	32	0	0	0	0	logfile
✔	8RT5	19479	2024-08-06	2024-01-25	2.69	3.93	2.72	3.3	0.007	0.79	0.0	0.05	12.35	0.01	1.988	9.86	0.00	1.5	98.5	0.0	0.37	0.80	0.74	3.88	3.3	0.006	1.00	0.0	0.06	16.09	0.00	2.462	14.19	1.21	0.4	99.6	0.0	0.15	3.13	0.89	0.89	2.91	17456	2144	32	0	0	0	0	logfile
✔	8RT5	19479	2025-05-18	2024-01-25	2.69	3.93	2.73	3.3	0.007	0.79	0.0	0.05	12.35	0.01	1.988	9.86	0.00	1.5	98.5	0.0	0.37	0.80	0.74	3.88	3.3	0.005	0.92	0.0	0.06	16.25	0.00	2.458	12.37	1.26	0.8	99.2	0.0	0.21	3.12	0.90	0.89	2.75	17456	2144	32	0	0	0	0	logfile
✔	8Y2E	38852	2025-02-11	2024-01-25	3.03	3.33	3.15	3.3	0.005	0.61	0.0	0.04	17.53	0.00	2.283	3.56	0.00	4.4	95.6	0.0	1.57	0.65	0.86	3.39	3.3	0.003	0.52	0.0	0.04	16.68	0.00	2.629	2.37	4.07	3.3	96.7	0.0	1.78	0.26	0.58	0.84	2.97	4214	528	2	0	3	0	0	logfile
✔	8Y2E	38852	2025-01-13	2024-01-25	3.03	3.33	3.15	3.3	0.005	0.61	0.0	0.04	17.53	0.00	2.283	3.56	0.00	4.4	95.6	0.0	1.57	0.65	0.86	3.39	3.3	0.003	0.52	0.0	0.04	16.68	0.00	2.629	2.37	4.07	3.3	96.7	0.0	1.78	0.26	0.58	0.84	2.97	4214	528	2	0	3	0	0	logfile
✔	8Y2E	38852	2025-03-06	2024-01-25	3.03	3.33	3.14	3.3	0.005	0.61	0.0	0.04	17.53	0.00	2.283	3.56	0.00	4.4	95.6	0.0	1.57	0.65	0.86	3.39	3.3	0.003	0.53	0.0	0.04	16.71	0.00	2.627	2.14	4.52	3.4	96.6	0.0	1.78	0.26	0.58	0.84	3.06	4214	528	2	0	3	0	0	logfile
✔	8Y2E	38852	2025-04-27	2024-01-25	3.03	3.33	3.14	3.3	0.005	0.61	0.0	0.04	17.53	0.00	2.283	3.56	0.00	4.4	95.6	0.0	1.57	0.65	0.86	3.39	3.3	0.003	0.53	0.0	0.04	16.71	0.00	2.627	2.14	4.52	3.4	96.6	0.0	1.78	0.26	0.58	0.84	3.06	4214	528	2	0	3	0	0	logfile
✔	8Y2E	38852	2025-05-09	2024-01-25	3.03	3.33	3.14	3.3	0.005	0.61	0.0	0.04	17.53	0.00	2.283	3.56	0.00	4.4	95.6	0.0	1.57	0.65	0.86	3.39	3.3	0.003	0.54	0.0	0.04	16.71	0.00	2.623	2.26	3.85	3.8	96.2	0.0	1.74	0.26	0.58	0.84	3.04	4214	528	2	0	3	0	0	logfile
✔	8Y1o	38841	2025-05-16	2024-01-25	3.92	4.26	4.02	4.1	0.005	1.08	2.0	0.06	17.14	0.01	1.678	9.04	0.00	5.7	94.3	0.0	-2.66	0.65	0.74	1.19	4.1	0.003	0.76	0.0	0.04	17.46	0.00	2.502	11.51	2.86	5.7	94.3	0.0	-0.95	1.13	0.65	0.76	1.17	14226	1844	1	0	0	0	0	logfile
✔	8VSZ	43512	2025-05-15	2024-01-25	3.07	3.28	3.18	3.3	0.003	0.66	0.0	0.05	19.65	0.00	2.233	10.74	0.00	2.9	96.8	0.3	-0.47	0.64	0.75	1.97	3.3	0.006	0.82	0.0	0.05	17.99	0.00	2.269	9.37	4.20	4.1	95.6	0.3	-0.22	1.26	0.67	0.82	2.17	13220	1580	15	0	25	0	0	logfile
✔	8VSZ	43512	2024-12-30	2024-01-25	3.07	3.28	3.17	3.3	0.003	0.65	0.0	0.05	19.65	0.00	2.032	10.74	0.00	2.9	96.8	0.3	-0.47	0.64	0.75	1.97	3.3	0.004	0.73	0.0	0.05	18.08	0.00	2.308	9.71	4.62	3.8	95.8	0.3	-0.09	1.27	0.66	0.81	2.43	13220	1580	15	0	25	0	0	logfile
✔	8VSZ	43512	2025-01-19	2024-01-25	3.07	3.28	3.17	3.3	0.003	0.65	0.0	0.05	19.65	0.00	2.032	10.74	0.00	2.9	96.8	0.3	-0.47	0.64	0.75	1.97	3.3	0.004	0.71	0.0	0.05	18.03	0.00	2.329	9.03	4.62	3.1	96.5	0.3	-0.01	1.26	0.66	0.81	2.37	13220	1580	15	0	25	0	0	logfile
✔	8RT8	19482	2024-12-29	2024-01-25	3.05	4.11	3.09	3.4	0.006	0.81	0.0	0.05	13.74	0.01	1.973	17.21	0.07	3.8	96.2	0.0	-0.89	0.79	0.86	2.24	3.4	0.006	0.72	0.0	0.04	15.07	0.00	2.393	10.93	1.81	2.2	97.8	0.0	0.36	0.78	0.79	0.89	2.32	55802	7184	46	0	0	0	0	logfile
✘	8RT8	19482	2024-09-25	2024-01-25	3.05	4.11	3.09	3.4	0.006	0.81	0.0	0.05	13.74	0.01	1.973	17.21	0.07	3.8	96.2	0.0	-0.89	0.79	0.86	2.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	55802	7184	46	0	0	0	0	logfile
✔	8RT8	19482	2024-10-11	2024-01-25	3.05	4.11	3.09	3.4	0.006	0.81	0.0	0.05	13.74	0.01	1.973	17.21	0.07	3.8	96.2	0.0	-0.89	0.79	0.86	2.24	3.4	0.006	0.72	0.0	0.04	15.07	0.00	2.393	10.93	1.81	2.2	97.8	0.0	0.36	0.78	0.79	0.89	2.32	55802	7184	46	0	0	0	0	logfile
✔	8RT8	19482	2025-01-17	2024-01-25	3.05	4.11	3.09	3.4	0.006	0.81	0.0	0.05	13.74	0.01	1.973	17.21	0.07	3.8	96.2	0.0	-0.89	0.79	0.86	2.24	3.4	0.004	0.66	0.0	0.04	14.96	0.00	2.407	9.71	1.69	1.9	98.1	0.0	0.47	0.75	0.79	0.89	2.25	55802	7184	46	0	0	0	0	logfile

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