Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UYF	42804	2024-10-10	2023-11-13	2.75	3.09	2.39	3.0	0.003	0.51	0.0	0.04	9.08	0.00	2.305	4.72	1.12	1.2	98.8	0.0	1.14	0.74	0.86	5.22	3.0	0.003	0.56	0.0	0.04	13.79	0.00	2.490	6.03	1.95	1.9	98.1	0.0	1.60	0.98	0.75	0.87	3.62	6460	801	2	0	0	0	0	logfile
✔	8UYF	42804	2024-09-24	2023-11-13	2.75	3.09	2.39	3.0	0.003	0.51	0.0	0.04	9.08	0.00	2.305	4.72	1.12	1.2	98.8	0.0	1.14	0.74	0.86	5.22	3.0	0.003	0.56	0.0	0.04	13.79	0.00	2.490	6.03	1.95	1.9	98.1	0.0	1.60	0.98	0.75	0.87	3.62	6460	801	2	0	0	0	0	logfile
✔	8UYF	42804	2024-08-03	2023-11-13	2.75	3.09	2.39	3.0	0.003	0.51	0.0	0.04	9.08	0.00	2.305	4.72	1.12	1.2	98.8	0.0	1.14	0.74	0.86	5.22	3.0	0.003	0.56	0.0	0.04	13.79	0.00	2.490	6.03	1.95	1.9	98.1	0.0	1.60	0.98	0.75	0.87	3.62	6460	801	2	0	0	0	0	logfile
✔	8UYF	42804	2024-07-19	2023-11-13	2.75	3.09	2.39	3.0	0.003	0.51	0.0	0.04	9.08	0.00	2.305	4.72	1.12	1.2	98.8	0.0	1.14	0.74	0.86	5.22	3.0	0.003	0.56	0.0	0.04	13.80	0.00	2.216	7.19	2.65	2.2	97.8	0.0	1.77	1.89	0.75	0.86	3.49	6460	801	2	0	0	0	0	logfile
✔	8UYF	42804	2024-02-13	2023-11-13	2.75	3.09	2.39	3.0	0.003	0.51	0.0	0.04	9.08	0.00	2.305	4.72	1.12	1.2	98.8	0.0	1.14	0.74	0.86	5.22	3.0	0.002	0.56	0.0	0.04	13.69	0.00	2.190	6.27	1.39	1.7	98.3	0.0	1.55	1.27	0.75	0.87	3.89	6460	801	2	0	0	0	0	logfile
✔	8UYF	42804	2024-12-27	2023-11-13	2.75	3.09	2.39	3.0	0.003	0.51	0.0	0.04	9.08	0.00	2.305	4.72	1.12	1.2	98.8	0.0	1.14	0.74	0.86	5.22	3.0	0.003	0.56	0.0	0.04	13.79	0.00	2.490	6.03	1.95	1.9	98.1	0.0	1.60	0.98	0.75	0.87	3.62	6460	801	2	0	0	0	0	logfile
✔	8UYF	42804	2024-11-14	2023-11-13	2.75	3.09	2.39	3.0	0.003	0.51	0.0	0.04	9.08	0.00	2.305	4.72	1.12	1.2	98.8	0.0	1.14	0.74	0.86	5.22	3.0	0.003	0.56	0.0	0.04	13.79	0.00	2.490	6.03	1.95	1.9	98.1	0.0	1.60	0.98	0.75	0.87	3.62	6460	801	2	0	0	0	0	logfile
✔	8R47	18881	2024-09-23	2023-11-13	2.25	2.05	2.13	2.3	0.013	2.04	0.0	0.10	15.67	0.02	2.041	0.82	0.00	0.0	100.0	0.0	-4.59	0.54	0.81	6.28	2.3	0.003	0.68	0.0	0.04	16.37	0.00	2.532	7.20	1.52	5.5	94.5	0.0	-3.98	1.04	0.52	0.83	6.20	3780	498	6	0	0	0	0	logfile
✔	8R4B	18884	2024-07-19	2023-11-13	3.88	2.61	—	2.9	0.003	0.69	0.0	0.04	16.62	0.00	2.206	12.29	0.52	9.5	90.2	0.3	-2.78	0.76	0.69	1.44	2.9	0.004	0.76	0.0	0.04	17.35	0.00	2.133	15.96	7.18	9.8	89.8	0.4	-2.71	1.57	0.77	0.72	1.54	7600	1031	4	0	1	0	0	logfile
✔	8R4D	18886	2024-12-27	2023-11-13	3.88	3.12	3.79	3.1	0.003	0.65	0.0	0.04	14.85	0.00	2.289	12.94	0.30	9.6	89.8	0.7	-2.57	0.52	0.58	2.62	3.1	0.003	0.67	0.0	0.04	17.00	0.00	2.504	13.24	3.57	10.4	88.9	0.7	-2.50	1.50	0.52	0.58	2.14	3573	478	3	0	1	0	0	logfile
✔	8R4D	18886	2024-11-14	2023-11-13	3.88	3.12	3.79	3.1	0.003	0.65	0.0	0.04	14.85	0.00	2.289	12.94	0.30	9.6	89.8	0.7	-2.57	0.52	0.58	2.62	3.1	0.003	0.67	0.0	0.04	17.00	0.00	2.504	13.24	3.57	10.4	88.9	0.7	-2.50	1.50	0.52	0.58	2.14	3573	478	3	0	1	0	0	logfile
✔	8R4D	18886	2024-10-09	2023-11-13	3.88	3.12	3.79	3.1	0.003	0.65	0.0	0.04	14.85	0.00	2.289	12.94	0.30	9.6	89.8	0.7	-2.57	0.52	0.58	2.62	3.1	0.003	0.67	0.0	0.04	17.00	0.00	2.504	13.24	3.57	10.4	88.9	0.7	-2.50	1.50	0.52	0.58	2.14	3573	478	3	0	1	0	0	logfile
✔	8R4D	18886	2024-09-23	2023-11-13	3.88	3.12	3.79	3.1	0.003	0.65	0.0	0.04	14.85	0.00	2.289	12.94	0.30	9.6	89.8	0.7	-2.57	0.52	0.58	2.62	3.1	0.003	0.67	0.0	0.04	17.00	0.00	2.504	13.24	3.57	10.4	88.9	0.7	-2.50	1.50	0.52	0.58	2.14	3573	478	3	0	1	0	0	logfile
✔	8R4D	18886	2024-08-02	2023-11-13	3.88	3.12	3.79	3.1	0.003	0.65	0.0	0.04	14.85	0.00	2.289	12.94	0.30	9.6	89.8	0.7	-2.57	0.52	0.58	2.62	3.1	0.003	0.67	0.0	0.04	17.00	0.00	2.504	13.24	3.57	10.4	88.9	0.7	-2.50	1.50	0.52	0.58	2.14	3573	478	3	0	1	0	0	logfile
✔	8R4D	18886	2024-07-18	2023-11-13	3.88	3.12	3.79	3.1	0.003	0.65	0.0	0.04	14.85	0.00	2.289	12.94	0.30	9.6	89.8	0.7	-2.57	0.52	0.58	2.62	3.1	0.003	0.68	0.0	0.04	17.11	0.00	2.317	14.85	4.46	10.9	88.5	0.7	-2.55	0.38	0.52	0.59	2.31	3573	478	3	0	1	0	0	logfile
✔	8R4D	18886	2024-06-24	2023-11-13	3.88	3.12	3.79	3.1	0.003	0.65	0.0	0.04	14.85	0.00	2.289	12.94	0.30	9.6	89.8	0.7	-2.57	0.52	0.58	2.62	3.1	0.003	0.69	0.0	0.04	17.16	0.00	2.279	15.15	4.17	11.1	88.3	0.7	-2.52	0.39	0.52	0.59	2.35	3573	478	3	0	1	0	0	logfile
✔	8R4D	18886	2025-03-05	2023-11-13	3.88	3.12	3.79	3.1	0.003	0.65	0.0	0.04	14.85	0.00	2.289	12.94	0.30	9.6	89.8	0.7	-2.57	0.52	0.58	2.62	3.1	0.003	0.66	0.0	0.04	16.89	0.00	2.505	11.32	3.27	10.0	89.3	0.7	-2.25	0.40	0.51	0.58	2.25	3573	478	3	0	1	0	0	logfile
✔	8R4D	18886	2025-02-11	2023-11-13	3.88	3.12	3.79	3.1	0.003	0.65	0.0	0.04	14.85	0.00	2.289	12.94	0.30	9.6	89.8	0.7	-2.57	0.52	0.58	2.62	3.1	0.003	0.62	0.0	0.04	16.81	0.00	2.503	10.88	3.57	9.1	90.2	0.7	-2.20	0.40	0.52	0.58	2.25	3573	478	3	0	1	0	0	logfile
✔	8R4D	18886	2025-01-13	2023-11-13	3.88	3.12	3.79	3.1	0.003	0.65	0.0	0.04	14.85	0.00	2.289	12.94	0.30	9.6	89.8	0.7	-2.57	0.52	0.58	2.62	3.1	0.003	0.62	0.0	0.04	16.81	0.00	2.503	10.88	3.57	9.1	90.2	0.7	-2.20	0.40	0.52	0.58	2.25	3573	478	3	0	1	0	0	logfile
✔	8R47	18881	2024-12-27	2023-11-13	2.25	2.05	2.13	2.3	0.013	2.04	0.0	0.10	15.67	0.02	2.041	0.82	0.00	0.0	100.0	0.0	-4.59	0.54	0.81	6.28	2.3	0.003	0.68	0.0	0.04	16.37	0.00	2.532	7.20	1.52	5.5	94.5	0.0	-3.98	1.04	0.52	0.83	6.20	3780	498	6	0	0	0	0	logfile

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