Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XZJ	38798	2024-08-03	2024-01-21	3.0	2.01	—	1.7	0.011	0.94	0.0	0.06	11.33	0.01	2.252	11.85	2.72	1.8	97.9	0.3	0.36	0.70	0.73	4.12	1.6	0.005	0.71	0.0	0.05	15.03	0.00	2.540	8.03	1.81	2.4	97.5	0.1	1.00	1.18	0.74	0.80	3.40	9106	1162	6	0	0	0	0	logfile
✔	8XZJ	38798	2025-05-12	2024-01-21	3.0	2.01	—	1.7	0.011	0.97	0.0	0.06	11.33	0.01	2.252	11.85	2.72	1.8	97.9	0.3	0.36	0.70	0.73	4.12	1.6	0.003	0.62	0.0	0.04	15.11	0.00	2.549	7.75	2.22	2.1	97.8	0.1	1.10	1.18	0.73	0.80	3.08	9106	1162	6	0	0	0	0	logfile
✔	8XZJ	38798	2025-04-29	2024-01-21	3.0	2.01	—	1.7	0.011	0.97	0.0	0.06	11.33	0.01	2.252	11.85	2.72	1.8	97.9	0.3	0.36	0.70	0.73	4.12	1.6	0.004	0.66	0.0	0.04	15.10	0.00	2.544	7.97	2.32	2.6	97.2	0.2	0.94	1.18	0.74	0.80	3.15	9106	1162	6	0	0	0	0	logfile
✔	8XZJ	38798	2025-03-13	2024-01-21	3.0	2.01	—	1.7	0.011	0.94	0.0	0.06	11.33	0.01	2.252	11.85	2.72	1.8	97.9	0.3	0.36	0.70	0.73	4.12	1.6	0.005	0.67	0.0	0.04	15.16	0.00	2.541	7.75	2.12	2.5	97.5	0.1	0.99	1.18	0.74	0.80	3.20	9106	1162	6	0	0	0	0	logfile
✔	8XZJ	38798	2025-02-13	2024-01-21	3.0	2.01	—	1.7	0.011	0.94	0.0	0.06	11.33	0.01	2.252	11.85	2.72	1.8	97.9	0.3	0.36	0.70	0.73	4.12	1.6	0.004	0.65	0.0	0.04	15.14	0.00	2.547	7.97	2.32	2.4	97.5	0.1	0.93	1.18	0.74	0.80	3.12	9106	1162	6	0	0	0	0	logfile
✔	8XZJ	38798	2025-01-16	2024-01-21	3.0	2.01	—	1.7	0.011	0.94	0.0	0.06	11.33	0.01	2.252	11.85	2.72	1.8	97.9	0.3	0.36	0.70	0.73	4.12	1.6	0.004	0.65	0.0	0.04	15.14	0.00	2.547	7.97	2.32	2.4	97.5	0.1	0.93	1.18	0.74	0.80	3.12	9106	1162	6	0	0	0	0	logfile
✔	8XZA	38791	2024-12-27	2024-01-21	4.07	4.37	3.89	4.2	0.007	1.10	1.0	0.06	16.31	0.01	1.212	30.95	0.14	8.0	91.1	0.9	-1.65	0.71	0.72	—	4.2	0.005	0.86	0.0	0.05	14.42	0.01	2.348	23.08	0.00	6.1	93.8	0.1	-1.13	1.33	0.73	0.75	—	6565	790	4	0	9	0	0	logfile
✔	8XZA	38791	2025-01-14	2024-01-21	4.07	4.37	3.89	4.2	0.007	1.10	1.0	0.06	16.31	0.01	1.212	30.95	0.14	8.0	91.1	0.9	-1.65	0.71	0.72	—	4.2	0.003	0.78	0.0	0.05	14.07	0.00	2.396	17.54	0.00	5.2	94.7	0.1	-0.94	1.30	0.72	0.74	—	6565	790	4	0	9	0	0	logfile
✔	8XZA	38791	2025-02-11	2024-01-21	4.07	4.37	3.89	4.2	0.007	1.10	1.0	0.06	16.31	0.01	1.212	30.95	0.14	8.0	91.1	0.9	-1.65	0.71	0.72	—	4.2	0.003	0.78	0.0	0.05	14.07	0.00	2.396	17.54	0.00	5.2	94.7	0.1	-0.94	1.30	0.72	0.74	—	6565	790	4	0	9	0	0	logfile
✔	8XZA	38791	2025-05-10	2024-01-21	4.07	4.37	3.86	4.2	0.007	1.11	1.0	0.06	16.31	0.01	1.212	30.95	0.14	8.0	91.1	0.9	-1.65	0.71	0.72	—	4.2	0.007	0.81	0.0	0.05	14.24	0.00	2.402	18.63	0.00	5.3	94.5	0.1	-0.97	1.65	0.72	0.74	—	6565	790	4	0	9	0	0	logfile
✔	8XZ8	38789	2025-05-28	2024-01-21	3.65	4.08	3.88	3.7	0.004	0.79	0.0	0.06	21.40	0.00	2.113	14.00	0.82	7.0	92.8	0.2	-1.11	0.80	0.78	1.13	3.8	0.003	0.72	0.0	0.05	16.58	0.00	2.089	11.25	3.00	7.0	92.9	0.2	-0.87	1.48	0.80	0.79	1.18	30785	3785	25	0	72	0	0	logfile
✔	8XZA	38791	2025-04-27	2024-01-21	4.07	4.37	3.86	4.2	0.007	1.11	1.0	0.06	16.31	0.01	1.212	30.95	0.14	8.0	91.1	0.9	-1.65	0.71	0.72	—	4.2	0.006	0.83	0.0	0.05	14.07	0.00	2.375	19.41	0.14	5.7	94.1	0.1	-0.99	1.31	0.72	0.75	—	6565	790	4	0	9	0	0	logfile
✔	8XZA	38791	2025-03-11	2024-01-21	4.07	4.37	3.86	4.2	0.007	1.10	1.0	0.06	16.31	0.01	1.212	30.95	0.14	8.0	91.1	0.9	-1.65	0.71	0.72	—	4.2	0.003	0.79	0.0	0.05	14.10	0.00	2.362	16.53	0.00	5.5	94.4	0.1	-0.88	1.30	0.72	0.74	—	6565	790	4	0	9	0	0	logfile
✔	8Y01	38800	2025-05-12	2024-01-21	2.48	3.45	2.57	3.2	0.013	1.36	7.0	0.10	11.41	0.01	1.998	12.18	2.63	4.3	95.5	0.2	-1.61	0.69	0.83	4.25	3.2	0.006	0.71	0.0	0.04	14.97	0.00	2.511	8.39	3.17	3.8	96.2	0.0	0.37	0.60	0.68	0.83	3.88	8705	1133	6	0	1	0	0	logfile
✔	8Y01	38800	2025-04-29	2024-01-21	2.48	3.45	2.57	3.2	0.013	1.36	7.0	0.10	11.41	0.01	1.998	12.18	2.63	4.3	95.5	0.2	-1.61	0.69	0.83	4.25	3.2	0.005	0.69	0.0	0.04	15.01	0.00	2.528	7.63	2.52	3.4	96.6	0.0	0.45	0.61	0.67	0.83	3.81	8705	1133	6	0	1	0	0	logfile
✔	8Y01	38800	2025-03-13	2024-01-21	2.48	3.45	2.57	3.2	0.012	1.36	7.0	0.10	11.41	0.01	1.998	12.18	2.63	4.3	95.5	0.2	-1.61	0.69	0.83	4.25	3.2	0.003	0.65	0.0	0.04	14.93	0.00	2.530	7.69	2.41	3.0	97.0	0.0	0.54	0.61	0.67	0.83	3.48	8705	1133	6	0	1	0	0	logfile
✔	8XZD	38793	2024-11-16	2024-01-21	3.47	2.63	3.52	2.8	0.018	1.68	10.0	0.15	16.41	0.01	2.052	12.09	5.31	3.0	96.8	0.1	2.42	0.80	0.75	2.60	2.2	0.003	0.67	0.0	0.04	17.36	0.00	2.348	7.16	2.73	3.0	97.0	0.0	1.33	1.14	0.78	0.81	3.06	6436	791	3	0	1	0	0	logfile
✘	8XZG	38795	2025-01-14	2024-01-21	3.2	3.59	3.31	3.6	0.008	0.88	0.0	0.06	14.04	0.00	2.173	9.19	1.56	6.1	93.8	0.1	-2.72	0.62	0.77	2.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7172	919	5	0	0	0	0	logfile
✘	8XZG	38795	2025-02-12	2024-01-21	3.2	3.59	3.31	3.6	0.008	0.88	0.0	0.06	14.04	0.00	2.173	9.19	1.56	6.1	93.8	0.1	-2.72	0.62	0.77	2.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7172	919	5	0	0	0	0	logfile
✔	8XZD	38793	2024-12-29	2024-01-21	3.47	2.63	3.52	2.8	0.018	1.68	10.0	0.15	16.41	0.01	2.052	12.09	5.31	3.0	96.8	0.1	2.42	0.80	0.75	2.60	2.2	0.003	0.67	0.0	0.04	17.36	0.00	2.348	7.16	2.73	3.0	97.0	0.0	1.33	1.14	0.78	0.81	3.06	6436	791	3	0	1	0	0	logfile

• ← previous
• Page 391 of 5030
• next →