Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9MMG	48391	2025-08-23	2024-12-20	3.25	3.43	3.25	3.9	0.004	0.90	0.0	0.04	23.97	0.01	2.249	5.77	0.00	0.0	0.0	0.0	—	0.64	0.35	—	1.6	0.007	0.92	0.0	0.05	25.62	0.01	2.080	27.32	0.00	0.0	0.0	0.0	—	1.94	0.93	0.87	—	9927	0	1	463	0	0	0	logfile
✔	9MNA	48418	2025-08-23	2024-12-20	3.77	2.62	3.79	2.4	0.004	0.87	0.0	0.05	19.05	0.01	2.070	6.42	0.00	3.9	96.1	0.0	-1.50	0.60	0.53	0.97	2.2	0.003	0.65	0.0	0.04	20.01	0.00	1.933	11.42	2.38	3.7	96.3	0.0	0.42	0.83	0.67	0.66	1.00	12076	1383	7	69	2	0	0	logfile
✔	9L4C	62809	2025-08-24	2024-12-20	4.06	4.28	4.13	4.1	0.014	0.71	1.0	0.04	11.58	0.00	1.861	13.34	0.89	2.4	97.5	0.1	0.03	0.76	0.75	—	4.1	0.004	0.62	0.0	0.04	10.88	0.00	2.088	6.97	0.22	7.9	92.1	0.0	0.95	0.63	0.77	0.76	—	21507	2468	6	0	2	0	7891	logfile
✔	9L4C	62809	2025-06-18	2024-12-20	4.06	4.28	4.13	4.1	0.014	0.71	1.0	0.04	11.58	0.00	1.861	13.34	0.89	2.4	97.5	0.1	0.03	0.76	0.75	—	4.1	0.002	0.53	0.0	0.03	10.69	0.00	2.299	3.97	0.00	5.3	94.7	0.0	2.68	0.61	0.76	0.76	—	21507	2468	6	0	2	0	7891	logfile
✔	9L3W	62793	2025-06-06	2024-12-19	3.5	2.25	—	1.6	0.002	0.51	0.0	0.04	12.79	0.00	2.121	6.73	0.00	3.0	97.0	0.0	0.72	0.71	0.73	2.13	1.6	0.004	0.59	0.0	0.04	15.15	0.00	2.567	7.30	2.34	3.8	96.2	0.0	0.55	1.14	0.73	0.76	2.35	7262	983	5	0	0	0	0	logfile
✔	9L3W	62793	2025-04-28	2024-12-19	3.5	2.25	—	1.6	0.002	0.51	0.0	0.04	12.79	0.00	2.121	6.73	0.00	3.0	97.0	0.0	0.72	0.71	0.73	2.13	1.6	0.004	0.59	0.0	0.04	15.15	0.00	2.567	7.30	2.34	3.8	96.2	0.0	0.55	1.14	0.73	0.76	2.35	7262	983	5	0	0	0	0	logfile
✔	9L3W	62793	2025-08-22	2024-12-19	3.5	2.25	—	1.6	0.002	0.51	0.0	0.04	12.79	0.00	2.121	6.73	0.00	3.0	97.0	0.0	0.72	0.71	0.73	2.13	1.6	0.003	0.58	0.0	0.04	15.46	0.00	2.572	6.31	3.16	4.1	95.9	0.0	0.54	0.43	0.73	0.76	2.34	7262	983	5	0	0	0	0	logfile
✔	9L3W	62793	2025-07-25	2024-12-19	3.5	2.25	—	1.6	0.002	0.51	0.0	0.04	12.79	0.00	2.121	6.73	0.00	3.0	97.0	0.0	0.72	0.71	0.73	2.13	1.6	0.004	0.59	0.0	0.04	15.15	0.00	2.567	7.30	2.34	3.8	96.2	0.0	0.55	1.14	0.73	0.76	2.35	7262	983	5	0	0	0	0	logfile
✔	9L3W	62793	2025-05-11	2024-12-19	3.5	2.25	—	1.6	0.002	0.51	0.0	0.04	12.79	0.00	2.121	6.73	0.00	3.0	97.0	0.0	0.72	0.71	0.73	2.13	1.6	0.003	0.55	0.0	0.04	15.21	0.00	2.607	6.31	2.89	3.5	96.5	0.0	0.55	0.41	0.72	0.74	2.18	7262	983	5	0	0	0	0	logfile
✔	9L44	62805	2025-07-30	2024-12-19	3.02	3.21	3.05	3.2	0.011	1.20	11.0	0.08	11.45	0.01	1.777	2.60	0.15	6.6	93.4	0.0	-1.65	0.80	0.88	4.33	3.2	0.003	0.64	0.0	0.05	13.39	0.00	2.148	1.70	1.58	3.8	96.2	0.0	-0.34	1.68	0.79	0.89	3.92	12124	1548	8	0	20	0	0	logfile
✔	9L3Z	62799	2025-04-27	2024-12-19	3.9	2.91	3.66	4.0	0.003	0.54	0.0	0.04	14.17	0.00	1.337	6.84	0.21	6.1	93.9	0.0	-0.34	0.69	0.71	1.68	4.0	0.003	0.66	0.0	0.04	15.81	0.00	2.536	7.04	4.23	6.0	94.0	0.0	0.64	1.23	0.71	0.74	2.06	5147	733	5	0	1	0	0	logfile
✔	9L43	62804	2025-06-28	2024-12-19	3.83	4.06	3.88	3.9	0.016	1.12	9.0	0.04	14.19	0.01	2.069	12.98	0.37	8.3	91.5	0.3	-4.99	0.78	0.78	1.26	3.9	0.004	0.78	1.0	0.04	15.32	0.00	2.243	8.83	1.10	6.4	93.5	0.1	1.01	0.62	0.78	0.78	1.50	33261	2415	6	0	2	0	15995	logfile
✔	9L43	62804	2025-08-26	2024-12-19	3.83	4.06	3.88	3.9	0.016	1.12	9.0	0.04	14.19	0.01	2.069	12.95	0.37	8.3	91.5	0.3	-4.99	0.78	0.78	1.26	3.9	0.004	0.79	2.0	0.04	15.27	0.00	2.248	8.02	1.16	5.7	94.2	0.1	1.36	0.63	0.77	0.78	1.35	33261	2415	6	0	2	0	15995	logfile
✔	9MLK	48374	2025-08-22	2024-12-19	2.84	3.48	2.86	3.3	0.003	0.54	0.0	0.04	12.97	0.00	2.221	7.57	0.00	3.2	96.8	0.0	0.66	0.76	0.85	4.17	3.3	0.006	0.75	0.0	0.04	17.33	0.00	2.408	9.10	2.20	4.8	95.2	0.0	1.07	0.51	0.76	0.86	3.82	7335	929	9	0	0	0	0	logfile
✔	9L44	62805	2025-08-23	2024-12-19	3.02	3.21	3.05	3.2	0.011	1.20	11.0	0.08	11.45	0.01	1.777	2.60	0.15	6.6	93.4	0.0	-1.65	0.80	0.88	4.33	3.2	0.003	0.60	0.0	0.05	13.29	0.00	2.182	2.04	1.58	3.2	96.8	0.0	-0.33	1.68	0.82	0.90	3.91	12124	1548	8	0	20	0	0	logfile
✔	9L3Z	62799	2025-08-22	2024-12-19	3.9	2.91	3.66	4.0	0.003	0.54	0.0	0.04	14.17	0.00	1.337	6.84	0.21	6.1	93.9	0.0	-0.34	0.69	0.71	1.68	4.0	0.003	0.67	0.0	0.04	15.71	0.00	2.534	7.97	4.65	6.4	93.6	0.0	0.44	1.23	0.71	0.74	1.87	5147	733	5	0	1	0	0	logfile
✔	9L3Z	62799	2025-06-05	2024-12-19	3.9	2.91	3.66	4.0	0.003	0.54	0.0	0.04	14.17	0.00	1.337	6.84	0.21	6.1	93.9	0.0	-0.34	0.69	0.71	1.68	4.0	0.003	0.66	0.0	0.04	15.81	0.00	2.536	7.04	4.23	6.0	94.0	0.0	0.64	1.23	0.71	0.74	2.06	5147	733	5	0	1	0	0	logfile
✔	9L3Z	62799	2025-07-24	2024-12-19	3.9	2.91	3.66	4.0	0.003	0.54	0.0	0.04	14.17	0.00	1.337	6.84	0.21	6.1	93.9	0.0	-0.34	0.69	0.71	1.68	4.0	0.003	0.66	0.0	0.04	15.81	0.00	2.536	7.04	4.23	6.0	94.0	0.0	0.64	1.23	0.71	0.74	2.06	5147	733	5	0	1	0	0	logfile
✔	9L3Z	62799	2025-05-10	2024-12-19	3.9	2.91	3.66	4.0	0.003	0.54	0.0	0.04	14.17	0.00	1.337	6.84	0.21	6.1	93.9	0.0	-0.34	0.69	0.71	1.68	4.0	0.003	0.67	0.0	0.04	15.87	0.01	2.547	8.08	5.29	6.4	93.6	0.0	0.42	1.24	0.71	0.74	1.96	5147	733	5	0	1	0	0	logfile
✔	9L3Y	62798	2025-04-28	2024-12-19	3.6	2.31	—	1.7	0.002	0.57	0.0	0.04	12.95	0.00	2.172	8.54	0.00	7.3	92.6	0.1	0.06	0.72	0.70	1.85	1.7	0.003	0.62	0.0	0.04	15.52	0.00	2.584	6.58	2.19	8.0	91.9	0.1	-0.05	0.46	0.73	0.73	2.40	7383	993	5	0	0	0	0	logfile

• ← previous
• Page 44 of 5400
• next →