Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YKX	39375	2024-11-15	2024-03-05	2.69	3.09	2.85	3.0	0.004	0.61	0.0	0.04	14.75	0.00	2.222	4.28	0.43	2.9	97.1	0.0	1.26	0.58	0.82	4.43	3.0	0.003	0.56	0.0	0.04	15.66	0.00	2.591	4.92	1.18	1.9	98.1	0.0	1.52	0.85	0.60	0.84	4.07	8710	1121	6	0	1	0	0	logfile
✔	8YKX	39375	2024-10-10	2024-03-05	2.69	3.09	2.85	3.0	0.004	0.61	0.0	0.04	14.75	0.00	2.222	4.28	0.43	2.9	97.1	0.0	1.26	0.58	0.82	4.43	3.0	0.003	0.56	0.0	0.04	15.66	0.00	2.591	4.92	1.18	1.9	98.1	0.0	1.52	0.85	0.60	0.84	4.07	8710	1121	6	0	1	0	0	logfile
✔	8YKX	39375	2025-07-26	2024-03-05	2.69	3.09	2.85	3.0	0.007	0.67	0.0	0.04	14.75	0.00	2.222	4.28	0.43	2.9	97.1	0.0	1.26	0.58	0.82	4.43	3.0	0.004	0.58	0.0	0.04	15.50	0.00	2.581	5.20	1.72	2.3	97.7	0.0	1.50	0.43	0.61	0.85	4.14	8710	1121	6	0	1	0	0	logfile
✔	8YL5	39382	2024-10-14	2024-03-05	3.45	3.60	3.48	3.5	0.004	0.63	0.0	0.04	16.54	0.00	2.183	4.76	0.41	2.9	97.1	0.0	0.58	0.79	0.79	1.87	3.5	0.004	0.54	0.0	0.04	16.97	0.00	2.283	4.71	1.58	3.9	96.1	0.0	0.52	0.40	0.79	0.80	1.91	69382	4208	6	0	0	0	34366	logfile
✔	8YL5	39382	2025-01-22	2024-03-05	3.45	3.60	3.48	3.5	0.004	0.63	0.0	0.04	16.54	0.00	2.183	4.76	0.41	2.9	97.1	0.0	0.58	0.79	0.79	1.87	3.5	0.003	0.62	1.0	0.04	16.98	0.00	2.221	5.06	1.50	3.3	96.7	0.0	0.80	0.39	0.79	0.79	1.87	69382	4208	6	0	0	0	34366	logfile
✔	8YKA	39360	2024-11-18	2024-03-04	3.45	3.88	3.69	3.8	0.006	0.81	0.0	0.05	13.49	0.01	2.076	16.04	0.24	8.6	91.3	0.1	-2.55	0.77	0.75	1.64	3.8	0.003	0.62	0.0	0.04	14.57	0.00	2.423	8.37	0.58	6.2	93.8	0.0	-1.06	1.15	0.79	0.81	1.07	49386	6291	9	0	0	0	0	logfile
✔	8YKA	39360	2025-01-14	2024-03-04	3.45	3.88	3.69	3.8	0.006	0.81	0.0	0.05	13.49	0.01	2.076	16.04	0.24	8.6	91.3	0.1	-2.55	0.77	0.75	1.64	3.8	0.004	0.64	0.0	0.05	14.58	0.00	2.362	9.18	0.62	6.8	93.2	0.0	-1.28	1.15	0.80	0.82	1.13	49386	6291	9	0	0	0	0	logfile
✔	8YKA	39360	2024-10-10	2024-03-04	3.45	3.88	3.69	3.8	0.006	0.81	0.0	0.05	13.49	0.01	2.076	16.04	0.24	8.6	91.3	0.1	-2.55	0.77	0.75	1.64	3.8	0.003	0.62	0.0	0.04	14.57	0.00	2.423	8.37	0.58	6.2	93.8	0.0	-1.06	1.15	0.79	0.81	1.07	49386	6291	9	0	0	0	0	logfile
✔	8YKA	39360	2024-12-27	2024-03-04	3.45	3.88	3.69	3.8	0.006	0.81	0.0	0.05	13.49	0.01	2.076	16.04	0.24	8.6	91.3	0.1	-2.55	0.77	0.75	1.64	3.8	0.003	0.62	0.0	0.04	14.57	0.00	2.423	8.37	0.58	6.2	93.8	0.0	-1.06	1.15	0.79	0.81	1.07	49386	6291	9	0	0	0	0	logfile
✔	9AVL	43908	2024-11-19	2024-03-04	3.8	2.16	—	2.9	0.005	0.67	0.0	0.04	13.11	0.00	2.168	6.25	0.00	2.8	97.2	0.0	-0.08	0.76	0.75	3.09	1.9	0.004	0.57	0.0	0.04	14.82	0.00	2.338	5.02	2.32	3.1	96.9	0.0	0.45	0.40	0.78	0.75	2.84	18143	2247	13	0	24	0	0	logfile
✔	9AVL	43908	2024-10-14	2024-03-04	3.8	2.16	—	2.9	0.005	0.67	0.0	0.04	13.11	0.00	2.168	6.25	0.00	2.8	97.2	0.0	-0.08	0.76	0.75	3.09	1.9	0.004	0.57	0.0	0.04	14.82	0.00	2.338	5.02	2.32	3.1	96.9	0.0	0.45	0.40	0.78	0.75	2.84	18143	2247	13	0	24	0	0	logfile
✔	9AVL	43908	2025-06-16	2024-03-04	3.8	2.16	—	2.9	0.005	0.67	0.0	0.04	13.11	0.00	2.168	6.25	0.00	2.8	97.2	0.0	-0.08	0.76	0.75	3.09	1.9	0.005	0.60	0.0	0.05	14.90	0.00	2.329	5.24	2.27	3.5	96.5	0.0	0.28	0.40	0.78	0.76	2.92	18143	2247	13	0	24	0	0	logfile
✔	9AVL	43908	2025-01-22	2024-03-04	3.8	2.16	—	2.9	0.005	0.67	0.0	0.04	13.11	0.00	2.168	6.25	0.00	2.8	97.2	0.0	-0.08	0.76	0.75	3.09	1.9	0.004	0.57	0.0	0.04	14.86	0.00	2.342	5.27	2.68	3.1	96.9	0.0	0.42	0.40	0.78	0.75	2.91	18143	2247	13	0	24	0	0	logfile
✔	9AVL	43908	2025-05-19	2024-03-04	3.8	2.16	—	2.9	0.005	0.67	0.0	0.04	13.11	0.00	2.168	6.25	0.00	2.8	97.2	0.0	-0.08	0.76	0.75	3.09	1.9	0.005	0.61	0.0	0.05	14.96	0.00	2.329	5.21	2.73	3.5	96.5	0.0	0.24	0.40	0.78	0.76	2.84	18143	2247	13	0	24	0	0	logfile
✔	8YJV	39351	2025-07-28	2024-03-03	3.51	2.76	3.49	3.5	0.007	1.08	0.0	0.06	20.74	0.01	2.317	5.90	0.10	5.0	95.0	0.0	-3.60	0.71	0.75	2.39	3.5	0.003	0.63	0.0	0.04	21.45	0.00	2.540	11.90	1.97	2.8	97.2	0.0	-1.56	0.46	0.72	0.76	2.11	9938	1111	8	65	0	0	0	logfile
✔	8YJV	39351	2024-12-29	2024-03-03	3.51	2.76	3.49	3.5	0.007	1.08	0.0	0.06	20.74	0.01	2.317	5.90	0.10	5.0	95.0	0.0	-3.60	0.71	0.75	2.39	3.5	0.004	0.63	0.0	0.04	21.50	0.00	2.544	12.52	2.08	3.4	96.6	0.0	-1.47	0.46	0.72	0.76	1.99	9938	1111	8	65	0	0	0	logfile
✔	8YJY	39353	2025-05-09	2024-03-03	3.3	3.57	3.38	3.5	0.004	0.74	0.0	0.04	17.28	0.01	2.175	9.73	0.22	3.8	96.2	0.0	1.48	0.66	0.74	2.15	3.6	0.003	0.68	0.0	0.04	17.92	0.01	2.493	9.02	2.42	4.8	95.2	0.0	1.55	0.86	0.66	0.74	1.42	4254	530	2	0	0	0	0	logfile
✔	8YJY	39353	2025-04-27	2024-03-03	3.3	3.57	3.38	3.5	0.004	0.74	0.0	0.04	17.28	0.01	2.175	9.73	0.22	3.8	96.2	0.0	1.48	0.66	0.74	2.15	3.6	0.003	0.66	0.0	0.04	18.08	0.00	2.462	7.48	2.86	5.2	94.8	0.0	1.77	0.86	0.66	0.74	1.49	4254	530	2	0	0	0	0	logfile
✔	8YJY	39353	2025-03-06	2024-03-03	3.3	3.57	3.38	3.5	0.004	0.74	0.0	0.04	17.28	0.01	2.175	9.73	0.22	3.8	96.2	0.0	1.48	0.66	0.74	2.15	3.6	0.003	0.66	0.0	0.04	18.08	0.00	2.462	7.48	2.86	5.2	94.8	0.0	1.77	0.86	0.66	0.74	1.49	4254	530	2	0	0	0	0	logfile
✔	8YJY	39353	2025-02-11	2024-03-03	3.3	3.57	3.37	3.6	0.004	0.74	0.0	0.04	17.28	0.01	2.175	9.73	0.22	3.8	96.2	0.0	1.48	0.66	0.74	2.15	3.6	0.003	0.68	0.0	0.04	17.92	0.01	2.493	9.02	2.42	4.8	95.2	0.0	1.55	0.86	0.66	0.74	1.42	4254	530	2	0	0	0	0	logfile

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