Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XMF	38475	2025-03-06	2023-12-27	3.64	4.12	3.75	4.0	0.005	0.69	0.0	0.04	19.98	0.00	1.982	9.07	0.00	5.3	94.7	0.0	1.35	0.59	0.80	2.19	4.1	0.003	0.64	0.0	0.04	16.25	0.00	1.878	8.97	4.83	4.2	95.8	0.0	1.42	0.54	0.59	0.80	1.65	4929	636	4	0	13	0	0	logfile
✔	8XMF	38475	2025-04-27	2023-12-27	3.64	4.12	3.75	4.0	0.015	0.69	0.0	0.04	19.98	0.00	1.982	9.07	0.00	5.3	94.7	0.0	1.35	0.59	0.80	2.19	4.1	0.003	0.64	0.0	0.04	16.31	0.00	1.863	10.08	7.04	4.2	95.8	0.0	1.39	0.53	0.59	0.81	1.88	4929	636	4	0	13	0	0	logfile
✔	8XMF	38475	2024-11-14	2023-12-27	3.64	4.12	3.77	4.0	0.005	0.69	0.0	0.04	19.98	0.00	1.982	9.07	0.00	5.3	94.7	0.0	1.35	0.59	0.80	2.19	4.0	0.003	0.67	0.0	0.04	16.64	0.00	1.879	9.47	6.44	4.5	95.5	0.0	1.32	0.54	0.59	0.81	1.81	4929	636	4	0	13	0	0	logfile
✔	8XMF	38475	2024-12-27	2023-12-27	3.64	4.12	3.77	4.0	0.005	0.69	0.0	0.04	19.98	0.00	1.982	9.07	0.00	5.3	94.7	0.0	1.35	0.59	0.80	2.19	4.0	0.003	0.67	0.0	0.04	16.64	0.00	1.879	9.47	6.44	4.5	95.5	0.0	1.32	0.54	0.59	0.81	1.81	4929	636	4	0	13	0	0	logfile
✔	8VGM	43208	2025-01-20	2023-12-27	2.6	3.12	2.59	2.9	0.003	0.59	0.0	0.04	13.75	0.01	2.195	3.07	0.11	4.6	95.3	0.1	-1.27	0.73	0.86	3.18	2.9	0.004	0.71	0.0	0.04	16.13	0.00	2.379	7.79	1.70	2.6	97.3	0.1	1.32	1.21	0.73	0.86	2.67	15626	1962	8	0	0	0	0	logfile
✔	8VGM	43208	2025-05-17	2023-12-27	2.6	3.12	2.59	2.9	0.003	0.59	0.0	0.04	13.75	0.01	2.195	3.07	0.11	4.6	95.3	0.1	-1.27	0.73	0.86	3.18	2.9	0.004	0.70	0.0	0.04	16.13	0.00	2.381	7.79	1.87	2.6	97.3	0.1	1.33	1.21	0.73	0.85	2.60	15626	1962	8	0	0	0	0	logfile
✔	8VGM	43208	2024-11-18	2023-12-27	2.6	3.12	2.59	2.9	0.003	0.59	0.0	0.04	13.75	0.01	2.195	3.07	0.11	4.6	95.3	0.1	-1.27	0.73	0.86	3.18	2.9	0.004	0.71	0.0	0.04	16.06	0.00	2.382	7.79	1.76	2.5	97.4	0.1	1.25	1.21	0.73	0.85	2.42	15626	1962	8	0	0	0	0	logfile
✔	8VGM	43208	2024-12-31	2023-12-27	2.6	3.12	2.59	2.9	0.003	0.59	0.0	0.04	13.75	0.01	2.195	3.07	0.11	4.6	95.3	0.1	-1.27	0.73	0.86	3.18	2.9	0.004	0.71	0.0	0.04	16.06	0.00	2.382	7.79	1.76	2.5	97.4	0.1	1.25	1.21	0.73	0.85	2.42	15626	1962	8	0	0	0	0	logfile
✔	8XM6	38465	2025-04-27	2023-12-27	3.48	3.62	3.57	3.7	0.015	0.68	0.0	0.04	23.94	0.00	2.004	8.27	0.00	4.1	95.9	0.0	2.70	0.57	0.77	1.78	3.7	0.009	0.59	0.0	0.04	15.79	0.00	2.096	8.46	3.28	3.0	97.0	0.0	2.69	0.49	0.56	0.80	1.69	5205	645	4	0	13	0	0	logfile
✔	8XMP	38485	2025-05-22	2023-12-27	3.11	3.33	3.15	3.3	0.003	0.53	0.0	0.04	13.86	0.00	2.025	9.42	0.12	3.4	96.5	0.1	-0.51	0.68	0.77	2.24	3.3	0.003	0.56	0.0	0.04	15.88	0.00	2.299	7.57	2.38	4.4	95.5	0.1	-0.38	3.26	0.73	0.83	2.05	22949	2972	15	0	41	0	0	logfile
✔	8XMP	38485	2025-01-25	2023-12-27	3.11	3.33	3.15	3.3	0.003	0.52	0.0	0.04	13.86	0.00	2.025	9.42	0.12	3.4	96.5	0.1	-0.51	0.68	0.77	2.24	3.3	0.004	0.73	0.0	0.04	15.86	0.00	2.254	8.22	2.38	4.3	95.6	0.1	-0.41	3.26	0.73	0.84	2.19	22949	2972	15	0	41	0	0	logfile
✔	8XML	38481	2025-03-12	2023-12-27	2.58	3.37	2.66	3.2	0.005	0.84	0.0	0.05	9.18	0.01	2.236	4.22	0.00	3.9	96.0	0.1	-2.93	0.72	0.84	4.38	3.2	0.003	0.68	0.0	0.04	14.90	0.00	2.517	7.59	2.38	3.1	96.9	0.0	0.19	0.71	0.72	0.85	3.67	8245	1071	5	0	0	0	0	logfile
✔	8XML	38481	2025-04-29	2023-12-27	2.58	3.37	2.66	3.2	0.005	0.84	0.0	0.05	9.18	0.01	2.236	4.22	0.00	3.9	96.0	0.1	-2.93	0.72	0.84	4.38	3.2	0.003	0.68	0.0	0.04	14.90	0.00	2.517	7.59	2.38	3.1	96.9	0.0	0.19	0.71	0.72	0.85	3.67	8245	1071	5	0	0	0	0	logfile
✔	8XML	38481	2025-05-11	2023-12-27	2.58	3.37	2.66	3.2	0.005	0.84	0.0	0.05	9.18	0.01	2.236	4.22	0.00	3.9	96.0	0.1	-2.93	0.72	0.84	4.38	3.2	0.003	0.69	0.0	0.04	14.96	0.00	2.519	7.53	2.04	2.9	97.1	0.0	0.19	0.70	0.72	0.85	3.71	8245	1071	5	0	0	0	0	logfile
✔	8XML	38481	2025-01-15	2023-12-27	2.58	3.37	2.66	3.2	0.005	0.84	0.0	0.05	9.18	0.01	2.236	4.22	0.00	3.9	96.0	0.1	-2.93	0.72	0.84	4.38	3.2	0.003	0.69	0.0	0.04	14.96	0.00	2.519	7.53	2.04	2.9	97.1	0.0	0.19	0.70	0.72	0.85	3.71	8245	1071	5	0	0	0	0	logfile
✔	8XML	38481	2025-02-12	2023-12-27	2.58	3.37	2.66	3.2	0.005	0.84	0.0	0.05	9.18	0.01	2.236	4.22	0.00	3.9	96.0	0.1	-2.93	0.72	0.84	4.38	3.2	0.003	0.69	0.0	0.04	14.96	0.00	2.519	7.53	2.04	2.9	97.1	0.0	0.19	0.70	0.72	0.85	3.71	8245	1071	5	0	0	0	0	logfile
✔	8XM5	38463	2024-09-30	2023-12-27	2.61	2.22	2.60	2.1	0.004	0.64	3.0	0.05	12.96	0.01	2.026	8.16	0.11	4.3	95.6	0.1	0.14	0.78	0.79	3.41	2.0	0.003	0.62	0.0	0.05	15.90	0.00	2.406	7.09	2.25	4.2	95.8	0.0	0.35	1.29	0.78	0.80	3.03	24226	3047	6	0	27	0	0	logfile
✔	8XMQ	38486	2025-01-18	2023-12-27	3.21	3.45	3.24	3.4	0.004	0.56	0.0	0.04	13.77	0.00	2.074	9.10	0.15	4.7	95.3	0.1	-0.24	0.67	0.77	2.29	3.4	0.003	0.57	0.0	0.04	16.08	0.00	2.249	8.51	2.73	4.8	95.1	0.1	-0.29	1.33	0.67	0.82	2.03	12950	1657	12	0	25	0	0	logfile
✔	8XM5	38463	2025-01-26	2023-12-27	2.61	2.22	2.60	2.1	0.004	0.64	3.0	0.05	12.96	0.01	2.026	8.16	0.11	4.3	95.6	0.1	0.14	0.78	0.79	3.41	2.0	0.004	0.66	0.0	0.05	15.91	0.00	2.381	7.49	2.66	4.9	95.1	0.0	0.25	1.28	0.79	0.80	3.05	24226	3047	6	0	27	0	0	logfile
✔	8XM5	38463	2025-05-23	2023-12-27	2.61	2.22	2.59	2.1	0.004	0.67	3.0	0.05	12.96	0.01	2.026	8.16	0.11	4.3	95.6	0.1	0.14	0.78	0.79	3.41	2.0	0.005	0.83	1.0	0.05	16.03	0.00	2.165	8.89	2.51	4.3	95.7	0.0	0.22	1.28	0.79	0.80	3.18	24226	3047	6	0	27	0	0	logfile

• ← previous
• Page 457 of 5030
• next →