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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 9AUC | 43877 | 2025-02-14 | 2024-02-28 | 2.4 | 2.09 | 2.10 | 2.6 | 0.003 | 0.48 | 3.0 | 0.04 | 13.24 | 0.00 | 2.239 | 4.66 | 0.91 | 0.9 | 99.1 | 0.0 | -3.20 | 0.64 | 0.80 | 3.68 | 2.5 | 0.003 | 0.57 | 0.0 | 0.04 | 16.38 | 0.00 | 2.483 | 4.37 | 1.28 | 2.5 | 97.5 | 0.0 | 1.02 | 0.64 | 0.64 | 0.83 | 3.50 | 10369 | 1275 | 11 | 0 | 10 | 16 | 0 | logfile |
✔ | 9AUC | 43877 | 2024-12-29 | 2024-02-28 | 2.4 | 2.09 | 2.10 | 2.6 | 0.003 | 0.48 | 3.0 | 0.04 | 13.24 | 0.00 | 2.239 | 4.66 | 0.91 | 0.9 | 99.1 | 0.0 | -3.20 | 0.64 | 0.80 | 3.68 | 2.5 | 0.003 | 0.58 | 0.0 | 0.04 | 16.38 | 0.00 | 2.464 | 5.10 | 1.37 | 2.2 | 97.8 | 0.0 | 0.88 | 0.66 | 0.64 | 0.83 | 3.48 | 10369 | 1275 | 11 | 0 | 10 | 16 | 0 | logfile |
✔ | 9AUC | 43877 | 2024-10-11 | 2024-02-28 | 2.4 | 2.09 | 2.10 | 2.6 | 0.003 | 0.48 | 3.0 | 0.04 | 13.24 | 0.00 | 2.239 | 4.66 | 0.91 | 0.9 | 99.1 | 0.0 | -3.20 | 0.64 | 0.80 | 3.68 | 2.5 | 0.003 | 0.58 | 0.0 | 0.04 | 16.38 | 0.00 | 2.464 | 5.10 | 1.37 | 2.2 | 97.8 | 0.0 | 0.88 | 0.66 | 0.64 | 0.83 | 3.48 | 10369 | 1275 | 11 | 0 | 10 | 16 | 0 | logfile |
✔ | 9AU2 | 43842 | 2025-01-25 | 2024-02-28 | 3.1 | 3.34 | 3.11 | 3.3 | 0.005 | 0.63 | 2.0 | 0.05 | 9.79 | 0.01 | 2.030 | 3.71 | 1.16 | 3.0 | 96.9 | 0.1 | -0.91 | 0.63 | 0.73 | 5.07 | 3.3 | 0.002 | 0.51 | 0.0 | 0.04 | 12.10 | 0.00 | 2.428 | 2.57 | 2.27 | 1.9 | 98.1 | 0.0 | 0.43 | 0.36 | 0.78 | 0.86 | 3.88 | 23745 | 3419 | 20 | 0 | 49 | 0 | 0 | logfile |
✔ | 9AU2 | 43842 | 2025-05-23 | 2024-02-28 | 3.1 | 3.34 | 3.11 | 3.3 | 0.005 | 0.64 | 2.0 | 0.05 | 9.79 | 0.01 | 2.030 | 3.71 | 1.16 | 3.0 | 96.9 | 0.1 | -0.91 | 0.63 | 0.73 | 5.07 | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 12.02 | 0.00 | 2.430 | 2.48 | 2.05 | 2.2 | 97.8 | 0.0 | 0.56 | 0.36 | 0.78 | 0.85 | 3.90 | 23745 | 3419 | 20 | 0 | 49 | 0 | 0 | logfile |
✔ | 9AU2 | 43842 | 2025-06-20 | 2024-02-28 | 3.1 | 3.34 | 3.11 | 3.3 | 0.005 | 0.64 | 2.0 | 0.05 | 9.79 | 0.01 | 2.030 | 3.71 | 1.16 | 3.0 | 96.9 | 0.1 | -0.91 | 0.63 | 0.73 | 5.07 | 3.3 | 0.002 | 0.51 | 0.0 | 0.04 | 12.01 | 0.00 | 2.430 | 2.45 | 1.61 | 1.9 | 98.1 | 0.0 | 0.57 | 0.37 | 0.77 | 0.85 | 3.84 | 23745 | 3419 | 20 | 0 | 49 | 0 | 0 | logfile |
✔ | 9AU7 | 43872 | 2025-05-18 | 2024-02-28 | 3.4 | 2.42 | — | 3.3 | 0.004 | 0.66 | 0.0 | 0.04 | 14.95 | 0.01 | 2.224 | 13.06 | 0.21 | 4.4 | 95.6 | 0.0 | 0.16 | 0.61 | 0.54 | 0.16 | 2.0 | 0.005 | 0.65 | 0.0 | 0.04 | 16.19 | 0.01 | 2.230 | 13.47 | 1.55 | 5.3 | 94.6 | 0.1 | 0.44 | 1.34 | 0.67 | 0.64 | 1.73 | 17304 | 1079 | 4 | 0 | 0 | 0 | 8703 | logfile |
✔ | 9ATo | 43831 | 2025-06-24 | 2024-02-27 | 3.2 | 3.77 | 3.23 | 3.6 | 0.004 | 0.68 | 0.0 | 0.05 | 15.57 | 0.00 | 2.186 | 8.33 | 0.36 | 2.9 | 97.1 | 0.1 | 0.48 | 0.83 | 0.84 | 2.22 | 3.6 | 0.004 | 0.61 | 0.0 | 0.04 | 15.57 | 0.00 | 2.497 | 5.92 | 2.21 | 3.0 | 96.9 | 0.1 | 0.54 | 0.40 | 0.85 | 0.90 | 2.29 | 27725 | 3478 | 24 | 0 | 40 | 0 | 0 | logfile |
✔ | 9ATo | 43831 | 2025-05-27 | 2024-02-27 | 3.2 | 3.77 | 3.23 | 3.6 | 0.004 | 0.68 | 0.0 | 0.05 | 15.57 | 0.00 | 2.186 | 8.33 | 0.36 | 2.9 | 97.1 | 0.1 | 0.48 | 0.83 | 0.84 | 2.22 | 3.6 | 0.003 | 0.58 | 0.0 | 0.04 | 15.51 | 0.00 | 2.502 | 5.64 | 2.14 | 2.8 | 97.1 | 0.1 | 0.69 | 0.38 | 0.84 | 0.89 | 2.24 | 27725 | 3478 | 24 | 0 | 40 | 0 | 0 | logfile |
✔ | 9ATP | 43832 | 2025-05-16 | 2024-02-27 | 3.5 | 4.08 | 3.59 | 3.8 | 0.005 | 0.73 | 0.0 | 0.05 | 15.18 | 0.01 | 2.043 | 15.12 | 0.21 | 6.2 | 93.5 | 0.3 | -1.38 | 0.75 | 0.76 | 2.34 | 3.8 | 0.004 | 0.64 | 0.0 | 0.05 | 15.55 | 0.00 | 2.366 | 9.92 | 2.71 | 5.8 | 94.0 | 0.2 | -0.93 | 0.57 | 0.75 | 0.79 | 2.09 | 13004 | 1636 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8YH3 | 39280 | 2025-05-12 | 2024-02-27 | 3.4 | 4.05 | — | 3.7 | 0.010 | 1.22 | 0.0 | 0.08 | 13.86 | 0.02 | 2.121 | 9.79 | 1.15 | 4.5 | 95.3 | 0.2 | -0.72 | 0.61 | 0.58 | 0.55 | 3.8 | 0.004 | 0.81 | 0.0 | 0.04 | 16.09 | 0.00 | 2.410 | 12.79 | 2.41 | 4.3 | 95.7 | 0.0 | 0.32 | 1.85 | 0.67 | 0.73 | 0.54 | 8691 | 1103 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 8YH3 | 39280 | 2025-04-29 | 2024-02-27 | 3.4 | 4.05 | — | 3.7 | 0.010 | 1.22 | 0.0 | 0.08 | 13.86 | 0.02 | 2.121 | 9.79 | 1.15 | 4.5 | 95.3 | 0.2 | -0.72 | 0.61 | 0.58 | 0.55 | 3.8 | 0.004 | 0.83 | 0.0 | 0.05 | 16.18 | 0.00 | 2.420 | 13.83 | 2.20 | 4.8 | 95.2 | 0.0 | 0.17 | 1.86 | 0.67 | 0.74 | 0.79 | 8691 | 1103 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 8YH3 | 39280 | 2025-01-15 | 2024-02-27 | 3.4 | 4.05 | — | 3.7 | 0.010 | 1.22 | 0.0 | 0.08 | 13.86 | 0.02 | 2.121 | 9.79 | 1.15 | 4.5 | 95.3 | 0.2 | -0.72 | 0.61 | 0.58 | 0.55 | 3.8 | 0.004 | 0.81 | 0.0 | 0.04 | 16.09 | 0.00 | 2.410 | 12.79 | 2.41 | 4.3 | 95.7 | 0.0 | 0.32 | 1.85 | 0.67 | 0.73 | 0.54 | 8691 | 1103 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 8YH3 | 39280 | 2024-11-15 | 2024-02-27 | 3.4 | 4.05 | — | 3.7 | 0.010 | 1.22 | 0.0 | 0.08 | 13.86 | 0.02 | 2.121 | 9.79 | 1.15 | 4.5 | 95.3 | 0.2 | -0.72 | 0.61 | 0.58 | 0.55 | 3.8 | 0.004 | 0.86 | 0.0 | 0.05 | 16.16 | 0.00 | 2.397 | 15.56 | 2.41 | 4.1 | 95.9 | 0.0 | 0.09 | 1.88 | 0.67 | 0.73 | 0.82 | 8691 | 1103 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 9ATP | 43832 | 2024-11-17 | 2024-02-27 | 3.5 | 4.08 | 3.59 | 3.8 | 0.005 | 0.73 | 0.0 | 0.05 | 15.18 | 0.01 | 2.043 | 15.12 | 0.21 | 6.2 | 93.5 | 0.3 | -1.38 | 0.75 | 0.76 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13004 | 1636 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 9ATP | 43832 | 2025-01-19 | 2024-02-27 | 3.5 | 4.08 | 3.59 | 3.8 | 0.005 | 0.73 | 0.0 | 0.05 | 15.18 | 0.01 | 2.043 | 15.12 | 0.21 | 6.2 | 93.5 | 0.3 | -1.38 | 0.75 | 0.76 | 2.34 | 3.8 | 0.003 | 0.63 | 0.0 | 0.05 | 15.57 | 0.00 | 2.389 | 10.08 | 2.37 | 5.8 | 94.0 | 0.2 | -1.04 | 0.60 | 0.76 | 0.79 | 2.00 | 13004 | 1636 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 9ATP | 43832 | 2024-10-13 | 2024-02-27 | 3.5 | 4.08 | 3.59 | 3.8 | 0.005 | 0.73 | 0.0 | 0.05 | 15.18 | 0.01 | 2.043 | 15.12 | 0.21 | 6.2 | 93.5 | 0.3 | -1.38 | 0.75 | 0.76 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13004 | 1636 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 9ATP | 43832 | 2025-06-12 | 2024-02-27 | 3.5 | 4.08 | 3.59 | 3.8 | 0.005 | 0.73 | 0.0 | 0.05 | 15.18 | 0.01 | 2.043 | 15.12 | 0.21 | 6.2 | 93.5 | 0.3 | -1.38 | 0.75 | 0.76 | 2.34 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 15.52 | 0.00 | 2.342 | 8.67 | 2.30 | 5.2 | 94.6 | 0.2 | -0.78 | 0.59 | 0.75 | 0.79 | 1.94 | 13004 | 1636 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8YH3 | 39280 | 2024-12-28 | 2024-02-27 | 3.4 | 4.05 | — | 3.7 | 0.010 | 1.22 | 0.0 | 0.08 | 13.86 | 0.02 | 2.121 | 9.79 | 1.15 | 4.5 | 95.3 | 0.2 | -0.72 | 0.61 | 0.58 | 0.55 | 3.8 | 0.004 | 0.86 | 0.0 | 0.05 | 16.16 | 0.00 | 2.397 | 15.56 | 2.41 | 4.1 | 95.9 | 0.0 | 0.09 | 1.88 | 0.67 | 0.73 | 0.82 | 8691 | 1103 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 8YH3 | 39280 | 2025-07-26 | 2024-02-27 | 3.4 | 4.05 | — | 3.7 | 0.010 | 1.22 | 0.0 | 0.08 | 13.87 | 0.02 | 2.121 | 9.79 | 1.15 | 4.5 | 95.3 | 0.2 | -0.72 | 0.61 | 0.58 | 0.55 | 3.8 | 0.004 | 0.83 | 0.0 | 0.05 | 16.38 | 0.00 | 2.405 | 15.50 | 2.10 | 4.8 | 95.2 | 0.0 | -0.16 | 1.87 | 0.67 | 0.74 | 0.96 | 8691 | 1103 | 6 | 0 | 1 | 0 | 0 | logfile |