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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8VWW | 43604 | 2024-11-18 | 2024-02-02 | 3.9 | 4.09 | 3.83 | 4.1 | 0.003 | 0.63 | 0.0 | 0.04 | 13.70 | 0.01 | 2.056 | 4.35 | 2.05 | 4.5 | 95.4 | 0.1 | -0.82 | 0.67 | 0.73 | 2.95 | 4.1 | 0.003 | 0.65 | 0.0 | 0.04 | 15.44 | 0.00 | 2.415 | 8.77 | 1.28 | 4.5 | 95.5 | 0.0 | -0.23 | 1.33 | 0.71 | 0.77 | 1.96 | 13801 | 899 | 5 | 0 | 0 | 0 | 6855 | logfile |
✔ | 8VWW | 43604 | 2025-01-20 | 2024-02-02 | 3.9 | 4.09 | 3.83 | 4.1 | 0.003 | 0.63 | 0.0 | 0.04 | 13.70 | 0.01 | 2.056 | 4.35 | 2.05 | 4.5 | 95.4 | 0.1 | -0.82 | 0.67 | 0.73 | 2.95 | 4.1 | 0.004 | 0.69 | 0.0 | 0.04 | 15.41 | 0.00 | 2.363 | 10.51 | 1.79 | 5.8 | 94.2 | 0.0 | -0.46 | 1.32 | 0.73 | 0.78 | 2.19 | 13801 | 899 | 5 | 0 | 0 | 0 | 6855 | logfile |
✔ | 8VWW | 43604 | 2024-12-31 | 2024-02-02 | 3.9 | 4.09 | 3.83 | 4.1 | 0.003 | 0.63 | 0.0 | 0.04 | 13.70 | 0.01 | 2.056 | 4.35 | 2.05 | 4.5 | 95.4 | 0.1 | -0.82 | 0.67 | 0.73 | 2.95 | 4.1 | 0.003 | 0.65 | 0.0 | 0.04 | 15.44 | 0.00 | 2.415 | 8.77 | 1.28 | 4.5 | 95.5 | 0.0 | -0.23 | 1.33 | 0.71 | 0.77 | 1.96 | 13801 | 899 | 5 | 0 | 0 | 0 | 6855 | logfile |
✔ | 8VWY | 43605 | 2025-02-11 | 2024-02-02 | 2.78 | 2.94 | 2.88 | 3.1 | 0.006 | 0.58 | 0.0 | 0.04 | 12.58 | 0.00 | 2.133 | 11.76 | 6.10 | 5.2 | 94.8 | 0.0 | -1.38 | 0.63 | 0.78 | 3.81 | 3.1 | 0.004 | 0.62 | 0.0 | 0.04 | 15.86 | 0.00 | 2.274 | 10.44 | 3.29 | 6.0 | 94.0 | 0.0 | -0.90 | 0.50 | 0.62 | 0.80 | 2.47 | 6293 | 825 | 13 | 0 | 7 | 8 | 0 | logfile |
✔ | 8VWY | 43605 | 2025-03-11 | 2024-02-02 | 2.78 | 2.94 | 2.85 | 3.1 | 0.006 | 0.58 | 0.0 | 0.04 | 12.58 | 0.00 | 2.133 | 11.76 | 6.10 | 5.2 | 94.8 | 0.0 | -1.38 | 0.63 | 0.78 | 3.81 | 3.1 | 0.003 | 0.62 | 0.0 | 0.04 | 15.83 | 0.00 | 2.307 | 9.19 | 4.38 | 5.2 | 94.8 | 0.0 | -0.92 | 0.83 | 0.62 | 0.80 | 2.68 | 6293 | 825 | 13 | 0 | 7 | 8 | 0 | logfile |
✔ | 8VWY | 43605 | 2025-04-27 | 2024-02-02 | 2.78 | 2.94 | 2.85 | 3.1 | 0.006 | 0.58 | 0.0 | 0.04 | 12.58 | 0.00 | 2.133 | 11.76 | 6.10 | 5.2 | 94.8 | 0.0 | -1.38 | 0.63 | 0.78 | 3.81 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 15.75 | 0.00 | 2.321 | 9.85 | 2.97 | 5.2 | 94.8 | 0.0 | -0.82 | 0.83 | 0.62 | 0.80 | 2.62 | 6293 | 825 | 13 | 0 | 7 | 8 | 0 | logfile |
✔ | 8VWY | 43605 | 2025-05-10 | 2024-02-02 | 2.78 | 2.94 | 2.85 | 3.1 | 0.006 | 0.58 | 0.0 | 0.04 | 12.58 | 0.00 | 2.133 | 11.76 | 6.10 | 5.2 | 94.8 | 0.0 | -1.38 | 0.63 | 0.78 | 3.81 | 3.1 | 0.004 | 0.62 | 0.0 | 0.04 | 15.73 | 0.00 | 2.274 | 9.84 | 2.82 | 5.5 | 94.5 | 0.0 | -0.93 | 0.50 | 0.62 | 0.80 | 2.39 | 6293 | 825 | 13 | 0 | 7 | 8 | 0 | logfile |
✘ | 8VWV | 43601 | 2025-01-22 | 2024-02-02 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14474 | 1066 | 11 | 294 | 0 | 0 | 0 | logfile |
✔ | 8VWY | 43605 | 2025-06-05 | 2024-02-02 | 2.78 | 2.94 | 2.85 | 3.1 | 0.006 | 0.58 | 0.0 | 0.04 | 12.58 | 0.00 | 2.133 | 11.76 | 6.10 | 5.2 | 94.8 | 0.0 | -1.38 | 0.63 | 0.78 | 3.81 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 15.75 | 0.00 | 2.321 | 9.85 | 2.97 | 5.2 | 94.8 | 0.0 | -0.82 | 0.83 | 0.62 | 0.80 | 2.62 | 6293 | 825 | 13 | 0 | 7 | 8 | 0 | logfile |
✘ | 8VWT | 43596 | 2025-06-15 | 2024-02-02 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14451 | 1061 | 11 | 294 | 0 | 0 | 0 | logfile |
✘ | 8VWT | 43596 | 2025-05-18 | 2024-02-02 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14451 | 1061 | 11 | 294 | 0 | 0 | 0 | logfile |
✘ | 8VWT | 43596 | 2025-01-21 | 2024-02-02 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14451 | 1061 | 11 | 294 | 0 | 0 | 0 | logfile |
✔ | 8Y6N | 38992 | 2025-01-14 | 2024-02-02 | 3.4 | 3.60 | 3.34 | 3.6 | 0.009 | 1.52 | 14.0 | 0.10 | 18.06 | 0.01 | 2.030 | 20.21 | 9.97 | 14.4 | 81.6 | 4.0 | -3.25 | 0.60 | 0.74 | 2.52 | 3.6 | 0.003 | 0.76 | 0.0 | 0.04 | 16.79 | 0.00 | 2.608 | 11.49 | 4.36 | 7.2 | 92.8 | 0.0 | -1.58 | 0.53 | 0.59 | 0.73 | 2.37 | 5858 | 768 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8Y6N | 38992 | 2025-02-11 | 2024-02-02 | 3.4 | 3.60 | 3.34 | 3.6 | 0.009 | 1.52 | 14.0 | 0.10 | 18.06 | 0.01 | 2.030 | 20.21 | 9.97 | 14.4 | 81.6 | 4.0 | -3.25 | 0.60 | 0.74 | 2.52 | 3.6 | 0.003 | 0.76 | 0.0 | 0.04 | 16.79 | 0.00 | 2.608 | 11.49 | 4.36 | 7.2 | 92.8 | 0.0 | -1.58 | 0.53 | 0.59 | 0.73 | 2.37 | 5858 | 768 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 8VWV | 43601 | 2025-05-19 | 2024-02-02 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14474 | 1066 | 11 | 294 | 0 | 0 | 0 | logfile |
✔ | 8Y6K | 38989 | 2025-02-11 | 2024-02-02 | 3.94 | 2.95 | 4.01 | 2.0 | 0.006 | 0.97 | 0.0 | 0.05 | 15.52 | 0.01 | 2.136 | 21.47 | 0.33 | 4.8 | 95.2 | 0.0 | -0.44 | 0.66 | 0.59 | 0.59 | 1.8 | 0.003 | 0.73 | 0.0 | 0.04 | 17.77 | 0.00 | 2.406 | 13.77 | 3.11 | 4.4 | 95.6 | 0.0 | 0.42 | 0.54 | 0.66 | 0.59 | 0.66 | 5872 | 741 | 2 | 0 | 3 | 0 | 0 | logfile |
✔ | 8Y6K | 38989 | 2025-01-14 | 2024-02-02 | 3.94 | 2.95 | 4.01 | 2.0 | 0.006 | 0.97 | 0.0 | 0.05 | 15.52 | 0.01 | 2.136 | 21.47 | 0.33 | 4.8 | 95.2 | 0.0 | -0.44 | 0.66 | 0.59 | 0.59 | 1.8 | 0.003 | 0.73 | 0.0 | 0.04 | 17.77 | 0.00 | 2.406 | 13.77 | 3.11 | 4.4 | 95.6 | 0.0 | 0.42 | 0.54 | 0.66 | 0.59 | 0.66 | 5872 | 741 | 2 | 0 | 3 | 0 | 0 | logfile |
✘ | 8RW5 | 19543 | 2024-11-14 | 2024-02-02 | 2.94 | 3.11 | 2.94 | 3.1 | 0.003 | 0.54 | 0.0 | 0.04 | 15.69 | 0.00 | 2.179 | 5.79 | 0.29 | 2.5 | 97.5 | 0.0 | 0.66 | 0.67 | 0.85 | 3.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6753 | 872 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8VWV | 43601 | 2025-06-16 | 2024-02-02 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14474 | 1066 | 11 | 294 | 0 | 0 | 0 | logfile |
✘ | 8RW5 | 19543 | 2024-12-27 | 2024-02-02 | 2.94 | 3.11 | 2.94 | 3.1 | 0.003 | 0.54 | 0.0 | 0.04 | 15.69 | 0.00 | 2.179 | 5.79 | 0.29 | 2.5 | 97.5 | 0.0 | 0.66 | 0.67 | 0.85 | 3.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6753 | 872 | 1 | 0 | 0 | 0 | 0 | logfile |