Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8RKA	19266	2024-12-27	2023-12-23	3.12	3.09	3.24	3.1	0.002	0.49	0.0	0.04	13.37	0.00	2.094	8.66	0.00	4.5	95.5	0.0	2.40	0.74	0.69	0.79	3.0	0.003	0.58	0.0	0.04	16.64	0.00	2.395	6.34	2.12	4.0	96.0	0.0	2.24	1.09	0.83	0.86	2.36	50484	6504	24	0	0	0	0	logfile
✘	8RK5	19260	2024-10-13	2023-12-23	4.54	3.79	4.58	3.8	0.003	0.67	0.0	0.04	12.15	0.01	0.400	21.86	0.00	4.5	95.5	0.0	-1.01	0.67	0.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14424	1866	6	0	0	0	0	logfile
✘	8RK5	19260	2024-11-17	2023-12-23	4.54	3.79	4.58	3.8	0.003	0.67	0.0	0.04	12.15	0.01	0.400	21.86	0.00	4.5	95.5	0.0	-1.01	0.67	0.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14424	1866	6	0	0	0	0	logfile
✘	8RK5	19260	2024-09-26	2023-12-23	4.54	3.79	4.58	3.8	0.003	0.67	0.0	0.04	12.15	0.01	0.400	21.86	0.00	4.5	95.5	0.0	-1.01	0.67	0.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14424	1866	6	0	0	0	0	logfile
✔	8RK5	19260	2025-01-19	2023-12-23	4.54	3.79	4.58	3.8	0.003	0.67	0.0	0.04	12.15	0.01	0.555	21.86	0.00	4.5	95.5	0.0	-1.01	0.67	0.44	—	3.7	0.005	0.89	0.0	0.05	12.93	0.01	1.741	21.02	0.00	8.4	91.6	0.0	-2.59	0.81	0.68	0.46	—	14424	1866	6	0	0	0	0	logfile
✘	8RK5	19260	2025-05-16	2023-12-23	4.54	3.79	4.60	3.8	0.013	0.67	0.0	0.04	12.15	0.01	0.555	21.86	0.00	4.5	95.5	0.0	-1.01	0.67	0.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14424	1866	6	0	0	0	0	logfile
✔	8RK8	19264	2025-01-17	2023-12-23	3.88	3.77	3.91	4.0	0.003	0.55	0.0	0.05	14.93	0.01	0.528	17.22	0.00	3.2	96.8	0.0	0.36	0.71	0.64	0.77	4.0	0.047	1.23	0.0	0.05	17.20	0.01	0.681	23.85	6.07	4.9	95.1	0.0	-0.56	1.23	0.78	0.83	1.23	11226	1512	6	0	0	0	0	logfile
✔	8XKN	38421	2024-12-26	2023-12-23	3.11	3.40	3.25	3.4	0.005	0.60	0.0	0.05	16.55	0.00	2.145	5.52	0.32	4.4	95.6	0.0	-1.42	0.77	0.86	3.34	3.3	0.004	0.52	0.0	0.05	17.21	0.00	2.406	3.17	5.80	4.8	95.2	0.0	-2.02	0.90	0.77	0.87	3.58	45888	5808	24	0	0	0	0	logfile
✔	8RK8	19264	2024-12-29	2023-12-23	3.88	3.77	3.91	4.0	0.003	0.55	0.0	0.05	14.93	0.01	0.528	17.22	0.00	3.2	96.8	0.0	0.36	0.71	0.64	0.77	4.0	0.047	1.24	0.0	0.05	16.95	0.01	0.797	21.10	4.44	4.5	95.5	0.0	-0.19	1.21	0.77	0.82	1.16	11226	1512	6	0	0	0	0	logfile
✔	8RK8	19264	2024-11-16	2023-12-23	3.88	3.77	3.91	4.0	0.003	0.55	0.0	0.05	14.93	0.01	0.476	17.22	0.00	3.2	96.8	0.0	0.36	0.71	0.64	0.77	4.0	0.047	1.13	0.0	0.05	16.96	0.01	2.284	25.27	5.13	4.3	95.7	0.0	-0.52	1.27	0.78	0.84	1.16	11226	1512	6	0	0	0	0	logfile
✔	8RK8	19264	2024-10-12	2023-12-23	3.88	3.77	3.91	4.0	0.003	0.55	0.0	0.05	14.93	0.01	0.476	17.22	0.00	3.2	96.8	0.0	0.36	0.71	0.64	0.77	4.0	0.047	1.13	0.0	0.05	16.96	0.01	2.284	25.27	5.13	4.3	95.7	0.0	-0.52	1.27	0.78	0.84	1.16	11226	1512	6	0	0	0	0	logfile
✔	8RK8	19264	2024-09-25	2023-12-23	3.88	3.77	3.91	4.0	0.003	0.55	0.0	0.05	14.93	0.01	0.476	17.22	0.00	3.2	96.8	0.0	0.36	0.71	0.64	0.77	4.0	0.047	1.13	0.0	0.05	16.96	0.01	2.284	25.27	5.13	4.3	95.7	0.0	-0.52	1.27	0.78	0.84	1.16	11226	1512	6	0	0	0	0	logfile
✔	8RK8	19264	2025-05-13	2023-12-23	3.88	3.77	3.92	4.0	0.037	0.55	0.0	0.05	14.93	0.01	0.528	17.22	0.00	3.2	96.8	0.0	0.36	0.71	0.64	0.77	4.0	0.043	1.21	1.0	0.05	17.10	0.01	0.777	20.97	4.62	4.9	95.1	0.0	-0.23	1.24	0.78	0.83	1.39	11226	1512	6	0	0	0	0	logfile
✔	8RK5	19260	2024-12-30	2023-12-23	4.54	3.79	4.58	3.8	0.003	0.67	0.0	0.04	12.15	0.01	0.555	21.86	0.00	4.5	95.5	0.0	-1.01	0.67	0.44	—	3.8	0.007	0.87	0.0	0.05	13.02	0.01	1.955	19.09	0.00	6.6	93.0	0.3	-2.19	0.78	0.67	0.44	—	14424	1866	6	0	0	0	0	logfile
✔	8VFV	43190	2025-01-24	2023-12-22	3.3	3.51	3.33	3.5	0.007	1.20	1.0	0.06	13.91	0.01	1.702	2.86	0.27	2.3	97.7	0.0	1.14	0.69	0.84	3.76	3.5	0.005	0.90	2.0	0.04	14.04	0.00	2.039	7.94	2.88	3.6	96.4	0.0	0.36	0.48	0.71	0.86	3.42	21240	2607	29	0	72	0	0	logfile
✔	8XK1	38413	2025-05-16	2023-12-22	3.31	4.11	3.34	3.6	0.003	0.64	0.0	0.04	15.79	0.00	2.220	12.54	0.68	6.0	93.9	0.2	-0.97	0.86	0.81	1.83	3.6	0.004	0.71	0.0	0.04	16.28	0.00	2.508	11.37	3.36	6.5	93.5	0.0	-0.98	0.37	0.86	0.83	1.87	14312	1777	6	0	0	0	0	logfile
✔	8XK1	38413	2024-12-31	2023-12-22	3.31	4.11	3.34	3.6	0.003	0.64	0.0	0.04	15.79	0.00	2.220	12.54	0.68	6.0	93.9	0.2	-0.97	0.86	0.81	1.83	3.6	0.003	0.69	0.0	0.04	16.24	0.00	2.532	10.13	3.30	6.1	93.9	0.0	-0.94	0.35	0.86	0.83	1.80	14312	1777	6	0	0	0	0	logfile
✔	8VFV	43190	2025-05-21	2023-12-22	3.3	3.51	3.33	3.5	0.007	1.23	1.0	0.06	13.91	0.01	1.702	2.86	0.27	2.3	97.7	0.0	1.14	0.69	0.84	3.76	3.5	0.005	0.89	3.0	0.06	14.12	0.01	1.980	8.23	2.53	3.7	96.2	0.1	0.19	0.50	0.71	0.86	3.48	21240	2607	29	0	72	0	0	logfile
✔	8VFZ	43195	2025-05-16	2023-12-22	4.1	4.63	4.38	4.2	0.005	0.68	0.0	0.04	25.93	0.01	2.063	1.78	1.20	2.0	97.7	0.3	3.06	0.82	0.78	—	4.2	0.004	0.69	0.0	0.04	27.08	0.01	2.420	14.46	0.00	3.4	96.4	0.2	1.04	2.78	0.83	0.82	—	14906	984	12	342	0	0	0	logfile
✔	8VFZ	43195	2025-01-20	2023-12-22	4.1	4.63	4.39	4.2	0.005	0.68	0.0	0.04	25.93	0.01	2.063	1.78	1.20	2.0	97.7	0.3	3.06	0.82	0.78	—	4.2	0.004	0.69	0.0	0.04	27.08	0.01	2.420	14.46	0.00	3.4	96.4	0.2	1.04	2.78	0.83	0.82	—	14906	984	12	342	0	0	0	logfile

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