Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YBK	39120	2025-07-28	2024-02-14	2.69	2.95	2.58	2.9	0.007	0.99	0.0	0.05	27.85	0.01	2.369	0.00	0.00	1.7	98.3	0.0	1.55	0.81	0.84	3.15	2.9	0.005	0.59	0.0	0.04	27.84	0.00	2.533	4.63	1.72	2.0	98.0	0.0	2.71	1.11	0.78	0.83	2.81	10261	708	10	228	0	0	0	logfile
✔	8YBK	39120	2025-04-30	2024-02-14	2.69	2.95	2.58	2.9	0.007	0.99	0.0	0.05	27.85	0.01	2.369	0.00	0.00	1.7	98.3	0.0	1.55	0.81	0.84	3.15	2.9	0.005	0.59	0.0	0.04	27.84	0.00	2.533	4.63	1.72	2.0	98.0	0.0	2.71	1.11	0.78	0.83	2.81	10261	708	10	228	0	0	0	logfile
✔	8YBJ	39119	2024-10-12	2024-02-14	2.38	2.51	2.33	2.5	0.007	0.96	0.0	0.05	28.23	0.01	2.443	0.00	0.00	0.7	99.3	0.0	2.32	0.77	0.84	4.20	2.5	0.004	0.58	0.0	0.03	28.34	0.01	2.521	3.22	2.07	0.5	99.5	0.0	2.74	0.31	0.76	0.84	3.76	11953	758	10	290	0	0	0	logfile
✔	8YBJ	39119	2024-11-16	2024-02-14	2.38	2.51	2.33	2.5	0.007	0.96	0.0	0.05	28.23	0.01	2.443	0.00	0.00	0.7	99.3	0.0	2.32	0.77	0.84	4.20	2.5	0.004	0.58	0.0	0.03	28.34	0.01	2.521	3.22	2.07	0.5	99.5	0.0	2.74	0.31	0.76	0.84	3.76	11953	758	10	290	0	0	0	logfile
✔	8YBJ	39119	2024-12-29	2024-02-14	2.38	2.51	2.33	2.5	0.007	0.96	0.0	0.05	28.23	0.01	2.443	0.00	0.00	0.7	99.3	0.0	2.32	0.77	0.84	4.20	2.5	0.004	0.58	0.0	0.03	28.34	0.01	2.521	3.22	2.07	0.5	99.5	0.0	2.74	0.31	0.76	0.84	3.76	11953	758	10	290	0	0	0	logfile
✔	8YBJ	39119	2025-06-10	2024-02-14	2.38	2.51	2.33	2.5	0.007	0.96	0.0	0.05	28.23	0.01	2.443	0.00	0.00	0.7	99.3	0.0	2.32	0.77	0.84	4.20	2.5	0.004	0.57	0.0	0.03	28.29	0.00	2.579	3.51	1.75	0.7	99.3	0.0	2.82	0.26	0.76	0.84	3.84	11953	758	10	290	0	0	0	logfile
✔	8YBJ	39119	2025-05-14	2024-02-14	2.38	2.51	2.33	2.5	0.007	0.96	0.0	0.05	28.23	0.01	2.443	0.00	0.00	0.7	99.3	0.0	2.32	0.77	0.84	4.20	2.5	0.004	0.58	0.0	0.04	28.40	0.01	2.583	3.08	1.91	0.5	99.5	0.0	2.67	0.26	0.76	0.84	3.83	11953	758	10	290	0	0	0	logfile
✔	8YBJ	39119	2025-01-18	2024-02-14	2.38	2.51	2.33	2.5	0.007	0.96	0.0	0.05	28.23	0.01	2.443	0.00	0.00	0.7	99.3	0.0	2.32	0.77	0.84	4.20	2.5	0.004	0.58	0.0	0.04	28.40	0.01	2.583	3.08	1.91	0.5	99.5	0.0	2.67	0.26	0.76	0.84	3.83	11953	758	10	290	0	0	0	logfile
✔	8YBJ	39119	2025-07-29	2024-02-14	2.38	2.51	2.33	2.5	0.007	0.96	0.0	0.05	28.23	0.01	2.443	0.00	0.00	0.7	99.3	0.0	2.32	0.77	0.84	4.20	2.5	0.004	0.57	0.0	0.03	28.29	0.00	2.579	3.51	1.75	0.7	99.3	0.0	2.82	0.26	0.76	0.84	3.84	11953	758	10	290	0	0	0	logfile
✔	8S0A	19619	2025-05-28	2024-02-13	3.2	3.66	3.44	3.6	0.002	0.51	0.0	0.04	15.47	0.00	2.010	2.63	0.00	2.1	97.9	0.0	1.84	0.70	0.73	1.56	3.6	0.003	0.53	0.0	0.04	17.51	0.00	1.973	2.98	1.31	2.6	97.4	0.0	1.63	1.77	0.76	0.84	1.40	31433	3821	14	44	15	0	0	logfile
✔	8S0B	19620	2025-06-27	2024-02-13	3.6	3.97	3.69	3.9	0.003	0.53	0.0	0.04	16.90	0.00	1.851	3.77	0.00	2.7	97.3	0.0	1.23	0.73	0.73	1.32	3.9	0.003	0.59	0.0	0.04	18.51	0.00	1.940	5.82	0.92	2.5	97.5	0.0	1.14	1.36	0.74	0.75	0.89	32424	3834	15	90	17	0	0	logfile
✔	8S0B	19620	2025-05-29	2024-02-13	3.6	3.97	3.69	3.9	0.003	0.53	0.0	0.04	16.90	0.00	1.851	3.77	0.00	2.7	97.3	0.0	1.23	0.73	0.73	1.32	3.9	0.003	0.58	0.0	0.04	18.44	0.00	1.928	5.62	1.67	2.9	97.1	0.0	1.33	1.36	0.74	0.75	1.00	32424	3834	15	90	17	0	0	logfile
✘	8W0E	43707	2025-01-18	2024-02-13	3.4	3.92	3.68	3.8	0.002	0.54	0.0	0.04	14.57	0.00	1.908	6.90	0.63	5.0	95.0	0.0	-0.01	0.77	0.80	1.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	59772	3647	14	50	15	0	29690	logfile
✔	8W0E	43707	2024-10-12	2024-02-13	3.4	3.92	3.68	3.8	0.002	0.54	0.0	0.04	14.57	0.00	1.908	6.90	0.63	5.0	95.0	0.0	-0.01	0.77	0.80	1.98	3.8	0.004	0.57	0.0	0.04	16.01	0.00	1.764	5.52	1.54	5.7	94.3	0.0	0.18	0.41	0.77	0.82	1.68	59772	3647	14	50	15	0	29690	logfile
✔	8W0E	43707	2024-12-30	2024-02-13	3.4	3.92	3.68	3.8	0.002	0.54	0.0	0.04	14.57	0.00	1.908	6.90	0.63	5.0	95.0	0.0	-0.01	0.77	0.80	1.98	3.8	0.004	0.57	0.0	0.04	16.01	0.00	1.764	5.52	1.54	5.7	94.3	0.0	0.18	0.41	0.77	0.82	1.68	59772	3647	14	50	15	0	29690	logfile
✔	8S0D	19622	2024-12-26	2024-02-13	3.6	4.05	—	3.9	0.002	0.43	0.0	0.04	16.65	0.00	1.751	4.34	0.00	2.7	97.3	0.0	1.18	0.73	0.68	0.82	3.9	0.003	0.64	0.0	0.04	18.60	0.00	1.844	7.53	1.84	2.9	97.1	0.0	1.03	2.59	0.74	0.72	0.64	46024	5424	22	116	21	0	0	logfile
✔	8W0i	43710	2024-12-29	2024-02-13	3.5	4.45	3.68	3.8	0.003	0.49	0.0	0.04	9.62	0.00	1.742	4.48	0.03	4.4	95.6	0.0	1.01	0.77	0.80	0.92	3.8	0.004	0.66	1.0	0.04	11.70	0.00	1.732	5.30	0.74	6.4	93.6	0.0	0.61	1.02	0.77	0.80	0.82	56870	3557	12	0	15	0	28489	logfile
✔	8W0i	43710	2025-01-18	2024-02-13	3.5	4.45	3.68	3.8	0.003	0.49	0.0	0.04	9.62	0.00	1.742	4.48	0.03	4.4	95.6	0.0	1.01	0.77	0.80	0.92	3.8	0.005	0.56	0.0	0.04	11.75	0.00	1.725	5.81	0.83	7.0	93.0	0.0	0.39	1.02	0.77	0.80	0.85	56870	3557	12	0	15	0	28489	logfile
✘	8W0i	43710	2024-10-11	2024-02-13	3.5	4.45	3.68	3.8	0.003	0.49	0.0	0.04	9.62	0.00	1.742	4.48	0.03	4.4	95.6	0.0	1.01	0.77	0.80	0.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	56870	3557	12	0	15	0	28489	logfile
✔	8S0A	19619	2025-06-27	2024-02-13	3.2	3.66	3.44	3.6	0.002	0.51	0.0	0.04	15.47	0.00	2.010	2.63	0.00	2.1	97.9	0.0	1.84	0.70	0.73	1.56	3.6	0.002	0.55	0.0	0.04	17.47	0.00	1.989	3.03	1.43	2.6	97.4	0.0	1.39	1.77	0.76	0.84	1.42	31433	3821	14	44	15	0	0	logfile

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