Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YAG	39098	2025-01-25	2024-02-09	2.33	2.57	2.47	2.6	0.005	0.67	0.0	0.05	15.23	0.00	1.802	5.09	0.00	1.8	98.2	0.0	0.00	0.71	0.87	5.30	2.6	0.002	0.51	0.0	0.04	16.20	0.00	2.115	3.30	0.70	1.5	98.5	0.0	0.39	0.93	0.72	0.88	5.16	23960	3192	16	0	16	0	0	logfile
✔	8YAG	39098	2025-05-23	2024-02-09	2.33	2.57	2.46	2.6	0.004	0.67	0.0	0.05	15.23	0.00	1.802	5.09	0.00	1.8	98.2	0.0	0.00	0.71	0.87	5.30	2.6	0.005	0.66	0.0	0.05	16.27	0.01	2.156	2.82	1.31	1.7	98.3	0.0	0.02	0.93	0.71	0.88	5.10	23960	3192	16	0	16	0	0	logfile
✔	8VYN	43672	2025-01-25	2024-02-09	2.8	3.16	—	3.2	0.004	0.57	0.0	0.05	12.54	0.01	2.237	3.35	0.00	5.0	95.0	0.0	-0.26	0.73	0.85	4.72	3.2	0.005	0.63	0.0	0.05	14.91	0.00	2.369	4.94	3.53	3.2	96.8	0.0	0.02	0.51	0.60	0.83	4.11	23763	2958	27	0	33	0	0	logfile
✔	8VYN	43672	2025-06-20	2024-02-09	2.8	3.16	—	3.2	0.004	0.58	0.0	0.05	12.54	0.01	2.237	3.35	0.00	5.0	95.0	0.0	-0.26	0.73	0.85	4.72	3.2	0.005	0.64	0.0	0.05	14.93	0.00	2.368	5.03	3.60	3.3	96.7	0.0	-0.08	0.51	0.59	0.83	4.11	23763	2958	27	0	33	0	0	logfile
✔	8VYN	43672	2025-05-23	2024-02-09	2.8	3.16	—	3.2	0.004	0.58	0.0	0.05	12.54	0.01	2.237	3.35	0.00	5.0	95.0	0.0	-0.26	0.73	0.85	4.72	3.2	0.006	0.66	0.0	0.05	14.98	0.00	2.361	5.11	3.53	3.4	96.6	0.0	-0.05	0.51	0.59	0.82	4.08	23763	2958	27	0	33	0	0	logfile
✔	8YAG	39098	2025-06-20	2024-02-09	2.33	2.57	2.46	2.6	0.004	0.67	0.0	0.05	15.23	0.00	1.802	5.09	0.00	1.8	98.2	0.0	0.00	0.71	0.87	5.30	2.6	0.004	0.56	0.0	0.05	16.25	0.00	2.147	3.22	0.53	1.5	98.5	0.0	0.28	0.93	0.72	0.88	5.30	23960	3192	16	0	16	0	0	logfile
✔	8VYo	43673	2025-07-30	2024-02-09	3.74	3.99	3.82	3.8	0.005	0.73	0.0	0.04	13.90	0.01	2.100	3.23	0.31	5.4	94.6	0.0	-2.00	0.71	0.73	1.45	3.8	0.004	0.62	0.0	0.03	17.01	0.00	2.266	7.54	1.37	5.1	94.9	0.0	0.48	1.04	0.73	0.77	0.62	12075	750	4	0	2	0	6039	logfile
✔	8VYo	43673	2025-06-10	2024-02-09	3.74	3.99	3.82	3.8	0.005	0.73	0.0	0.04	13.90	0.01	2.100	3.23	0.31	5.4	94.6	0.0	-2.00	0.71	0.73	1.45	3.8	0.004	0.62	0.0	0.03	17.01	0.00	2.266	7.54	1.37	5.1	94.9	0.0	0.48	1.04	0.73	0.77	0.62	12075	750	4	0	2	0	6039	logfile
✔	8VYJ	43662	2025-05-14	2024-02-08	3.6	4.25	3.54	4.2	0.003	0.62	0.0	0.04	20.76	0.00	2.169	8.41	0.16	7.4	92.6	0.0	-0.46	0.67	0.70	1.52	4.2	0.004	0.81	0.0	0.04	17.78	0.00	2.336	8.62	3.25	8.2	91.8	0.0	-0.85	0.80	0.66	0.75	1.81	11715	1395	6	0	23	0	0	logfile
✔	8VYJ	43662	2025-07-30	2024-02-08	3.6	4.25	3.54	4.2	0.003	0.62	0.0	0.04	20.76	0.00	2.169	8.41	0.16	7.4	92.6	0.0	-0.46	0.67	0.70	1.52	4.2	0.004	0.82	0.0	0.04	17.62	0.00	2.329	9.68	3.66	8.1	91.9	0.0	-0.84	0.79	0.66	0.75	1.67	11715	1395	6	0	23	0	0	logfile
✔	8VYK	43663	2025-06-10	2024-02-08	3.9	4.50	3.94	4.4	0.004	0.97	0.0	0.05	20.13	0.02	2.031	10.60	0.57	7.2	92.8	0.0	-0.83	0.67	0.63	0.91	4.4	0.004	0.97	0.0	0.05	16.91	0.01	2.428	11.02	2.19	7.4	92.5	0.1	-1.05	1.25	0.66	0.72	0.95	11721	1395	6	0	23	0	0	logfile
✔	8VYK	43663	2025-05-14	2024-02-08	3.9	4.50	3.94	4.4	0.004	0.97	0.0	0.05	20.13	0.02	2.031	10.60	0.57	7.2	92.8	0.0	-0.83	0.67	0.63	0.91	4.4	0.004	0.97	0.0	0.05	17.08	0.00	2.433	10.90	1.87	7.1	92.7	0.1	-1.17	1.25	0.66	0.72	0.95	11721	1395	6	0	23	0	0	logfile
✔	8VYK	43663	2025-07-29	2024-02-08	3.9	4.50	3.94	4.4	0.004	0.97	0.0	0.05	20.13	0.02	2.031	10.60	0.57	7.2	92.8	0.0	-0.83	0.67	0.63	0.91	4.4	0.004	0.97	0.0	0.05	16.91	0.01	2.428	11.02	2.19	7.4	92.5	0.1	-1.05	1.25	0.66	0.72	0.95	11721	1395	6	0	23	0	0	logfile
✔	8VYJ	43662	2025-06-10	2024-02-08	3.6	4.25	3.54	4.2	0.003	0.62	0.0	0.04	20.76	0.00	2.169	8.41	0.16	7.4	92.6	0.0	-0.46	0.67	0.70	1.52	4.2	0.004	0.82	0.0	0.04	17.62	0.00	2.329	9.68	3.66	8.1	91.9	0.0	-0.84	0.79	0.66	0.75	1.67	11715	1395	6	0	23	0	0	logfile
✔	8YAA	39093	2025-03-11	2024-02-08	3.34	3.03	3.28	3.1	0.006	0.87	0.0	0.06	21.92	0.01	2.131	9.29	0.13	11.0	89.0	0.0	-4.08	0.78	0.85	3.54	3.2	0.003	0.70	0.0	0.05	15.73	0.00	2.447	6.12	1.72	9.1	90.9	0.0	-3.97	0.93	0.79	0.86	2.85	6985	844	17	0	36	0	0	logfile
✔	8YAA	39093	2025-02-12	2024-02-08	3.34	3.03	3.28	3.1	0.006	0.87	0.0	0.06	21.92	0.01	2.131	9.29	0.13	11.0	89.0	0.0	-4.08	0.78	0.85	3.54	3.2	0.003	0.68	0.0	0.05	15.67	0.00	2.448	5.47	1.59	6.7	93.3	0.0	-3.96	0.94	0.79	0.86	2.85	6985	844	17	0	36	0	0	logfile
✔	8YAA	39093	2025-04-28	2024-02-08	3.34	3.03	3.28	3.1	0.006	1.01	0.0	0.06	21.92	0.01	2.131	9.29	0.13	11.0	89.0	0.0	-4.08	0.78	0.85	3.54	3.2	0.003	0.76	0.0	0.05	15.72	0.00	2.451	5.40	1.59	6.7	93.2	0.1	-4.02	0.93	0.78	0.86	2.76	6985	844	17	0	36	0	0	logfile
✔	8YAA	39093	2025-05-10	2024-02-08	3.34	3.03	3.28	3.1	0.006	1.01	0.0	0.06	21.92	0.01	2.131	9.29	0.13	11.0	89.0	0.0	-4.08	0.78	0.85	3.54	3.2	0.003	0.77	0.0	0.05	15.75	0.00	2.447	5.62	1.85	8.4	91.5	0.1	-3.88	0.94	0.78	0.86	2.61	6985	844	17	0	36	0	0	logfile
✔	8YAA	39093	2025-01-14	2024-02-08	3.34	3.03	3.28	3.1	0.006	0.87	0.0	0.06	21.92	0.01	2.131	9.29	0.13	11.0	89.0	0.0	-4.08	0.78	0.85	3.54	3.2	0.003	0.68	0.0	0.05	15.67	0.00	2.448	5.47	1.59	6.7	93.3	0.0	-3.96	0.94	0.79	0.86	2.85	6985	844	17	0	36	0	0	logfile
✔	8YAB	39094	2025-06-12	2024-02-08	3.26	4.20	3.29	3.5	0.010	1.16	4.0	0.06	13.95	0.01	1.521	13.77	0.93	7.9	91.6	0.5	-0.98	0.77	0.66	1.19	3.5	0.004	0.68	0.0	0.04	14.31	0.00	2.493	8.12	2.28	5.1	94.8	0.1	0.15	0.96	0.84	0.71	1.20	14309	2274	5	0	0	0	0	logfile

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