Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9DH8	46859	2025-06-19	2024-09-03	3.5	3.83	3.62	3.7	0.004	0.66	0.0	0.04	14.59	0.00	2.108	11.31	0.00	2.7	97.3	0.0	1.36	0.77	0.77	1.72	3.8	0.003	0.63	0.0	0.04	16.46	0.00	2.476	10.47	1.66	2.2	97.8	0.0	1.68	0.78	0.78	0.79	1.17	21847	2709	2	0	4	0	0	logfile
✔	9JEE	61414	2025-05-20	2024-09-03	3.51	3.69	3.48	3.6	0.003	0.74	0.0	0.04	18.11	0.00	2.032	10.50	0.00	7.2	92.8	0.0	-2.34	0.67	0.71	1.40	3.6	0.003	0.79	0.0	0.04	18.47	0.00	2.262	9.71	4.29	7.3	92.7	0.0	-0.88	0.47	0.70	0.76	1.28	20660	2448	8	0	24	0	0	logfile
✔	9DHA	46861	2025-06-21	2024-09-03	3.6	4.00	3.82	3.8	0.003	0.62	0.0	0.04	14.92	0.00	1.985	11.03	0.00	2.9	97.1	0.0	1.17	0.82	0.85	1.62	3.8	0.003	0.58	0.0	0.04	16.32	0.00	1.973	8.54	1.18	2.5	97.5	0.0	1.76	1.22	0.82	0.85	1.50	24588	3038	2	0	5	0	0	logfile
✔	9GNQ	51477	2024-12-28	2024-09-03	2.9	3.52	2.88	3.3	0.006	0.69	0.0	0.05	17.14	0.01	2.084	5.18	0.99	2.8	97.1	0.1	0.45	0.76	0.89	3.67	3.3	0.003	0.66	0.0	0.04	15.88	0.00	2.030	4.47	1.29	2.7	97.3	0.0	1.18	1.69	0.72	0.89	3.24	9309	1166	7	1	4	0	0	logfile
✔	9JEE	61414	2025-06-18	2024-09-03	3.51	3.69	3.48	3.6	0.003	0.74	0.0	0.04	18.11	0.00	2.032	10.50	0.00	7.2	92.8	0.0	-2.34	0.67	0.71	1.40	3.6	0.004	0.66	0.0	0.04	18.44	0.00	2.439	9.76	3.23	7.5	92.5	0.0	-0.90	0.47	0.70	0.77	1.29	20660	2448	8	0	24	0	0	logfile
✔	9GNQ	51477	2025-06-08	2024-09-03	2.9	3.52	2.88	3.3	0.011	0.69	0.0	0.05	17.14	0.01	2.084	5.18	0.99	2.8	97.1	0.1	0.45	0.76	0.89	3.67	3.3	0.004	0.65	0.0	0.05	16.00	0.00	1.988	4.64	1.09	2.8	97.2	0.0	1.24	2.02	0.71	0.89	3.46	9309	1166	7	1	4	0	0	logfile
✔	9GNQ	51477	2025-05-12	2024-09-03	2.9	3.52	2.88	3.3	0.011	0.69	0.0	0.05	17.14	0.01	2.084	5.18	0.99	2.8	97.1	0.1	0.45	0.76	0.89	3.67	3.3	0.004	0.66	0.0	0.05	16.09	0.00	1.974	4.31	1.79	2.3	97.7	0.0	1.29	2.01	0.72	0.89	3.42	9309	1166	7	1	4	0	0	logfile
✔	9GNQ	51477	2025-04-30	2024-09-03	2.9	3.52	2.88	3.3	0.011	0.69	0.0	0.05	17.14	0.01	2.084	5.18	0.99	2.8	97.1	0.1	0.45	0.76	0.89	3.67	3.3	0.004	0.65	0.0	0.05	16.00	0.00	1.988	4.64	1.09	2.8	97.2	0.0	1.24	2.02	0.71	0.89	3.46	9309	1166	7	1	4	0	0	logfile
✔	9DHA	46861	2025-05-24	2024-09-03	3.6	4.00	3.82	3.8	0.003	0.62	0.0	0.04	14.92	0.00	1.985	11.03	0.00	2.9	97.1	0.0	1.17	0.82	0.85	1.62	3.8	0.002	0.57	0.0	0.04	16.32	0.00	2.021	7.81	1.15	2.2	97.8	0.0	1.88	1.23	0.82	0.85	1.43	24588	3038	2	0	5	0	0	logfile
✔	9GNQ	51477	2025-03-13	2024-09-03	2.9	3.52	2.88	3.3	0.006	0.69	0.0	0.05	17.14	0.01	2.084	5.18	0.99	2.8	97.1	0.1	0.45	0.76	0.89	3.67	3.3	0.004	0.65	0.0	0.05	16.00	0.00	1.988	4.64	1.09	2.8	97.2	0.0	1.24	2.02	0.71	0.89	3.46	9309	1166	7	1	4	0	0	logfile
✔	9GNQ	51477	2025-02-13	2024-09-03	2.9	3.52	2.88	3.3	0.006	0.69	0.0	0.05	17.14	0.01	2.084	5.18	0.99	2.8	97.1	0.1	0.45	0.76	0.89	3.67	3.3	0.004	0.66	0.0	0.05	16.09	0.00	1.974	4.31	1.79	2.3	97.7	0.0	1.29	2.01	0.72	0.89	3.42	9309	1166	7	1	4	0	0	logfile
✔	9GNQ	51477	2025-01-16	2024-09-03	2.9	3.52	2.88	3.3	0.006	0.69	0.0	0.05	17.14	0.01	2.084	5.18	0.99	2.8	97.1	0.1	0.45	0.76	0.89	3.67	3.3	0.004	0.66	0.0	0.05	16.09	0.00	1.974	4.31	1.79	2.3	97.7	0.0	1.29	2.01	0.72	0.89	3.42	9309	1166	7	1	4	0	0	logfile
✔	9DGi	46828	2025-05-09	2024-09-02	3.35	3.68	3.43	3.7	0.008	1.48	0.0	0.07	13.49	0.01	2.462	1.47	0.99	10.1	89.5	0.4	-8.28	0.46	0.77	2.93	3.7	0.003	0.77	0.0	0.04	14.06	0.01	2.547	2.45	3.94	6.2	93.8	0.0	-5.14	0.55	0.47	0.77	3.09	2048	265	2	0	1	0	0	logfile
✔	9DGi	46828	2025-06-04	2024-09-02	3.35	3.68	3.43	3.7	0.008	1.48	0.0	0.07	13.49	0.01	2.462	1.47	0.99	10.1	89.5	0.4	-8.28	0.46	0.77	2.93	3.7	0.003	0.77	0.0	0.04	13.80	0.01	2.550	1.96	2.46	5.4	94.6	0.0	-4.71	0.58	0.46	0.77	2.92	2048	265	2	0	1	0	0	logfile
✔	9DGG	46823	2025-05-15	2024-09-02	2.98	3.95	3.12	3.3	0.004	0.63	0.0	0.04	27.08	0.01	2.243	8.46	0.26	2.2	97.8	0.0	2.29	0.90	0.88	2.50	3.3	0.004	0.68	0.0	0.04	27.36	0.00	2.490	9.66	2.56	2.9	97.1	0.0	2.56	0.55	0.90	0.89	2.12	13339	959	14	286	4	0	0	logfile
✔	9DGG	46823	2024-12-30	2024-09-02	2.98	3.95	3.12	3.3	0.004	0.63	0.0	0.04	27.08	0.01	2.243	8.46	0.26	2.2	97.8	0.0	2.29	0.90	0.88	2.50	3.3	0.005	0.71	0.0	0.04	27.46	0.00	2.455	10.03	2.30	3.2	96.8	0.0	2.43	0.57	0.90	0.89	2.12	13339	959	14	286	4	0	0	logfile
✔	9DGG	46823	2025-06-11	2024-09-02	2.98	3.95	3.12	3.3	0.004	0.63	0.0	0.04	27.08	0.01	2.243	8.46	0.26	2.2	97.8	0.0	2.29	0.90	0.88	2.50	3.3	0.004	0.68	0.0	0.04	27.35	0.00	2.516	9.54	2.18	3.2	96.8	0.0	2.51	0.57	0.90	0.89	2.33	13339	959	14	286	4	0	0	logfile
✔	9DGG	46823	2025-01-18	2024-09-02	2.98	3.95	3.12	3.3	0.004	0.63	0.0	0.04	27.08	0.01	2.243	8.46	0.26	2.2	97.8	0.0	2.29	0.90	0.88	2.50	3.3	0.004	0.69	0.0	0.04	27.35	0.00	2.393	9.91	2.18	3.0	97.0	0.0	2.56	0.55	0.90	0.89	2.08	13339	959	14	286	4	0	0	logfile
✔	9JE0	61403	2025-05-09	2024-09-01	3.23	3.76	3.35	3.9	0.003	0.58	0.0	0.04	14.22	0.00	2.281	4.93	2.61	2.1	97.9	0.0	-0.32	0.44	0.66	1.06	3.8	0.003	0.69	0.0	0.04	15.93	0.00	2.614	8.66	2.61	2.6	97.4	0.0	2.09	0.61	0.43	0.70	1.21	3321	435	2	0	1	1	0	logfile
✘	9JE0	61403	2024-11-14	2024-09-01	3.23	3.76	3.35	3.9	0.003	0.58	0.0	0.04	14.22	0.00	2.281	4.93	2.61	2.1	97.9	0.0	-0.32	0.44	0.66	1.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3321	435	2	0	1	1	0	logfile

• ← previous
• Page 68 of 5208
• next →