Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JDB	61387	2025-03-11	2024-08-31	2.64	2.91	2.73	2.9	0.007	1.10	0.0	0.04	18.08	0.00	2.250	4.26	1.41	2.0	98.0	0.0	0.01	0.70	0.87	4.46	2.9	0.003	0.67	0.0	0.04	17.78	0.00	2.603	3.49	1.13	1.6	98.4	0.0	0.47	0.20	0.70	0.86	4.00	6592	808	4	0	2	0	0	logfile
✔	9JDB	61387	2025-02-11	2024-08-31	2.64	2.91	2.73	2.9	0.007	1.10	0.0	0.04	18.08	0.00	2.250	4.26	1.41	2.0	98.0	0.0	0.01	0.70	0.87	4.46	2.9	0.005	0.79	0.0	0.05	17.87	0.01	2.592	3.56	1.13	2.6	97.4	0.0	0.06	0.20	0.70	0.87	4.20	6592	808	4	0	2	0	0	logfile
✔	9JDM	61396	2025-05-21	2024-08-31	3.13	3.33	3.16	3.3	0.002	0.51	0.0	0.03	19.02	0.00	2.032	6.95	0.00	7.1	92.9	0.0	-1.89	0.67	0.79	2.02	3.4	0.004	0.57	0.0	0.04	18.73	0.00	2.470	6.58	3.21	7.0	93.0	0.0	-0.39	0.37	0.72	0.82	2.21	20992	2440	8	0	28	0	0	logfile
✔	9JDB	61387	2025-05-10	2024-08-31	2.64	2.91	2.73	2.9	0.008	1.10	0.0	0.04	18.08	0.00	2.250	4.26	1.41	2.0	98.0	0.0	0.01	0.70	0.87	4.46	2.9	0.006	0.79	0.0	0.05	17.87	0.01	2.592	3.56	1.13	2.6	97.4	0.0	0.06	0.20	0.70	0.87	4.20	6592	808	4	0	2	0	0	logfile
✔	9JDB	61387	2025-01-14	2024-08-31	2.64	2.91	2.73	2.9	0.007	1.10	0.0	0.04	18.08	0.00	2.250	4.26	1.41	2.0	98.0	0.0	0.01	0.70	0.87	4.46	2.9	0.005	0.79	0.0	0.05	17.87	0.01	2.592	3.56	1.13	2.6	97.4	0.0	0.06	0.20	0.70	0.87	4.20	6592	808	4	0	2	0	0	logfile
✘	9JDM	61396	2025-06-18	2024-08-31	3.13	3.33	3.16	3.3	0.002	0.51	0.0	0.03	19.02	0.00	2.032	6.95	0.00	7.1	92.9	0.0	-1.89	0.67	0.79	2.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20992	2440	8	0	28	0	0	logfile
✔	9JDB	61387	2025-04-27	2024-08-31	2.64	2.91	2.73	2.9	0.008	1.10	0.0	0.04	18.08	0.00	2.250	4.26	1.41	2.0	98.0	0.0	0.01	0.70	0.87	4.46	2.9	0.003	0.66	0.0	0.04	17.75	0.00	2.608	3.80	1.27	1.6	98.4	0.0	0.36	0.20	0.70	0.86	3.95	6592	808	4	0	2	0	0	logfile
✔	9JCZ	61378	2025-05-10	2024-08-30	2.64	3.06	2.79	3.0	0.004	0.75	0.0	0.04	14.87	0.00	1.897	5.83	0.00	2.9	97.1	0.0	0.88	0.57	0.74	2.43	3.0	0.003	0.64	0.0	0.04	14.49	0.00	2.271	6.06	0.67	2.3	97.7	0.0	1.23	0.41	0.51	0.72	1.66	4364	525	2	0	11	2	0	logfile
✔	9JCZ	61378	2025-06-04	2024-08-30	2.64	3.06	2.79	3.0	0.004	0.75	0.0	0.04	14.87	0.00	1.897	5.83	0.00	2.9	97.1	0.0	0.88	0.57	0.74	2.43	3.0	0.002	0.62	0.0	0.04	14.45	0.00	2.310	6.29	0.45	2.3	97.7	0.0	1.32	0.42	0.51	0.72	1.46	4364	525	2	0	11	2	0	logfile
✔	9GMZ	51458	2025-05-20	2024-08-30	3.2	3.86	3.43	3.6	0.003	0.64	0.0	0.05	17.08	0.00	1.922	8.94	1.38	2.9	97.1	0.0	1.67	0.83	0.84	2.12	3.6	0.002	0.53	0.0	0.04	17.53	0.00	1.909	6.92	2.14	2.4	97.6	0.0	2.00	0.79	0.84	0.85	2.19	20472	2433	22	32	14	0	0	logfile
✔	9JCZ	61378	2025-04-27	2024-08-30	2.64	3.06	2.79	3.0	0.004	0.75	0.0	0.04	14.87	0.00	1.897	5.83	0.00	2.9	97.1	0.0	0.88	0.57	0.74	2.43	3.0	0.002	0.62	0.0	0.04	14.45	0.00	2.310	6.29	0.45	2.3	97.7	0.0	1.32	0.42	0.51	0.72	1.46	4364	525	2	0	11	2	0	logfile
✔	9GMZ	51458	2025-06-18	2024-08-30	3.2	3.86	3.43	3.6	0.003	0.64	0.0	0.05	17.08	0.00	1.922	8.94	1.38	2.9	97.1	0.0	1.67	0.83	0.84	2.12	3.6	0.002	0.54	0.0	0.04	17.58	0.00	1.903	7.31	2.05	2.6	97.4	0.0	1.90	1.03	0.84	0.86	2.17	20472	2433	22	32	14	0	0	logfile
✔	9JCV	61377	2025-04-27	2024-08-30	3.41	3.78	3.49	3.7	0.003	0.63	0.0	0.04	13.63	0.00	2.250	10.37	0.00	2.4	97.6	0.0	1.09	0.50	0.73	1.41	3.7	0.003	0.68	0.0	0.04	15.40	0.00	2.618	9.76	0.69	2.0	98.0	0.0	1.15	1.04	0.51	0.74	0.67	4111	512	2	0	4	0	0	logfile
✔	9JCV	61377	2025-05-09	2024-08-30	3.41	3.78	3.49	3.7	0.003	0.63	0.0	0.04	13.63	0.00	2.250	10.37	0.00	2.4	97.6	0.0	1.09	0.50	0.73	1.41	3.7	0.003	0.68	0.0	0.04	15.37	0.00	2.584	9.52	0.69	2.2	97.8	0.0	1.15	1.03	0.52	0.75	0.67	4111	512	2	0	4	0	0	logfile
✔	9JCV	61377	2025-06-04	2024-08-30	3.41	3.78	3.49	3.7	0.003	0.63	0.0	0.04	13.63	0.00	2.250	10.37	0.00	2.4	97.6	0.0	1.09	0.50	0.73	1.41	3.7	0.003	0.68	0.0	0.04	15.40	0.00	2.618	9.76	0.69	2.0	98.0	0.0	1.15	1.04	0.51	0.74	0.67	4111	512	2	0	4	0	0	logfile
✔	9GMK	51449	2025-05-16	2024-08-29	3.5	4.09	3.74	3.7	0.004	0.74	0.0	0.04	26.23	0.00	2.126	21.60	0.33	2.0	98.0	0.0	0.41	0.73	0.64	0.36	3.8	0.003	0.70	0.0	0.04	27.52	0.00	2.091	14.99	3.43	2.4	97.6	0.0	1.07	1.58	0.79	0.78	0.45	14643	1081	11	296	0	0	0	logfile
✔	9GMK	51449	2025-06-12	2024-08-29	3.5	4.09	3.74	3.7	0.004	0.74	0.0	0.04	26.23	0.00	2.126	21.60	0.33	2.0	98.0	0.0	0.41	0.73	0.64	0.36	3.8	0.006	0.77	0.0	0.04	27.80	0.01	2.055	18.82	3.65	2.5	97.5	0.0	0.95	1.62	0.80	0.80	0.51	14643	1081	11	296	0	0	0	logfile
✔	9DER	46794	2024-11-17	2024-08-29	3.9	5.17	4.02	4.0	0.003	0.56	0.0	0.05	15.30	0.00	2.080	5.89	0.90	3.7	96.3	0.0	-0.23	0.86	0.71	0.15	4.1	0.005	0.68	0.0	0.04	11.76	0.00	1.848	13.31	0.77	7.5	92.5	0.0	-0.96	1.80	0.89	0.76	0.30	14207	925	9	0	24	2	6843	logfile
✔	9DER	46794	2025-01-20	2024-08-29	3.9	5.17	4.02	4.0	0.003	0.56	0.0	0.05	15.30	0.00	2.080	5.89	0.90	3.7	96.3	0.0	-0.23	0.86	0.71	0.15	4.1	0.003	0.63	0.0	0.05	11.73	0.00	1.921	9.43	0.90	5.3	94.7	0.0	-0.66	1.78	0.88	0.75	0.09	14207	925	9	0	24	2	6843	logfile
✔	9DER	46794	2025-05-16	2024-08-29	3.9	5.17	4.02	4.0	0.003	0.59	0.0	0.05	15.30	0.00	2.080	5.89	0.90	3.7	96.3	0.0	-0.23	0.86	0.71	0.15	4.1	0.003	0.68	0.0	0.05	11.71	0.00	1.782	11.78	1.03	7.2	92.8	0.0	-0.77	1.79	0.88	0.76	0.10	14207	925	9	0	24	2	6843	logfile

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