Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9GMD	51448	2025-06-08	2024-08-28	4.0	4.41	4.02	4.2	0.004	0.61	0.0	0.03	16.62	0.01	1.992	9.49	0.19	3.5	96.5	0.0	1.67	0.85	0.78	—	4.2	0.003	0.57	0.0	0.03	17.30	0.00	2.319	6.46	2.42	2.9	97.1	0.0	2.39	0.82	0.84	0.80	—	9919	611	6	0	0	0	4925	logfile
✔	9GMD	51448	2025-04-30	2024-08-28	4.0	4.41	4.02	4.2	0.004	0.61	0.0	0.03	16.62	0.01	1.992	9.49	0.19	3.5	96.5	0.0	1.67	0.85	0.78	—	4.2	0.003	0.57	0.0	0.03	17.30	0.00	2.319	6.46	2.42	2.9	97.1	0.0	2.39	0.82	0.84	0.80	—	9919	611	6	0	0	0	4925	logfile
✔	9GMB	51447	2025-06-15	2024-08-28	4.2	4.40	4.01	4.1	0.009	0.89	14.0	0.09	16.35	0.01	1.992	9.18	0.51	3.1	96.9	0.0	1.82	0.80	0.69	—	4.1	0.003	0.50	0.0	0.03	13.94	0.00	2.230	5.04	0.00	2.9	97.1	0.0	3.04	1.76	0.85	0.80	—	17867	1111	6	0	0	0	8865	logfile
✔	9GMB	51447	2025-05-19	2024-08-28	4.2	4.40	4.01	4.1	0.009	0.89	14.0	0.09	16.35	0.01	1.992	9.18	0.51	3.1	96.9	0.0	1.82	0.80	0.69	—	4.1	0.002	0.49	0.0	0.03	13.94	0.00	2.245	4.37	0.00	2.9	97.1	0.0	2.94	1.76	0.85	0.79	—	17867	1111	6	0	0	0	8865	logfile
✔	9JBo	61321	2025-04-26	2024-08-27	3.39	3.02	2.39	3.3	0.005	0.76	0.0	0.05	18.29	0.00	2.444	13.61	0.00	6.1	93.9	0.0	-3.03	0.38	0.71	2.65	3.3	0.005	0.82	0.0	0.06	18.87	0.00	2.547	8.01	4.35	13.4	86.6	0.0	-2.23	1.04	0.41	0.75	1.60	1872	258	3	0	0	0	0	logfile
✔	9JBo	61321	2025-02-10	2024-08-27	3.39	3.02	2.41	3.3	0.005	0.76	0.0	0.05	18.29	0.00	2.444	13.61	0.00	6.1	93.9	0.0	-3.03	0.38	0.71	2.65	3.3	0.004	0.73	0.0	0.05	18.88	0.00	2.552	7.21	3.86	13.0	87.0	0.0	-2.06	1.02	0.41	0.75	1.60	1872	258	3	0	0	0	0	logfile
✔	9JBo	61321	2025-03-05	2024-08-27	3.39	3.02	2.39	3.3	0.005	0.76	0.0	0.05	18.29	0.00	2.444	13.61	0.00	6.1	93.9	0.0	-3.03	0.38	0.71	2.65	3.3	0.005	0.82	0.0	0.06	18.87	0.00	2.547	8.01	4.35	13.4	86.6	0.0	-2.23	1.04	0.41	0.75	1.60	1872	258	3	0	0	0	0	logfile
✔	9JBo	61321	2025-06-04	2024-08-27	3.39	3.02	2.39	3.3	0.005	0.76	0.0	0.05	18.29	0.00	2.444	13.61	0.00	6.1	93.9	0.0	-3.03	0.38	0.71	2.65	3.3	0.005	0.82	0.0	0.06	18.87	0.00	2.547	8.01	4.35	13.4	86.6	0.0	-2.23	1.04	0.41	0.75	1.60	1872	258	3	0	0	0	0	logfile
✔	9JBo	61321	2025-05-09	2024-08-27	3.39	3.02	2.39	3.3	0.005	0.76	0.0	0.05	18.29	0.00	2.444	13.61	0.00	6.1	93.9	0.0	-3.03	0.38	0.71	2.65	3.3	0.004	0.73	0.0	0.05	18.88	0.00	2.552	7.21	3.86	13.0	87.0	0.0	-2.06	1.02	0.41	0.75	1.60	1872	258	3	0	0	0	0	logfile
✔	9JBP	61322	2025-06-04	2024-08-27	3.18	2.96	1.87	4.1	0.003	0.70	0.0	0.05	16.94	0.00	2.424	10.13	0.00	2.6	97.4	0.0	-0.69	0.39	0.69	2.11	3.2	0.003	0.58	0.0	0.05	17.44	0.00	2.560	6.57	7.53	3.0	97.0	0.0	-1.64	1.16	0.32	0.70	2.98	2022	246	12	0	48	0	0	logfile
✔	9JBP	61322	2025-05-09	2024-08-27	3.18	2.96	1.87	4.1	0.003	0.70	0.0	0.05	16.94	0.00	2.424	10.13	0.00	2.6	97.4	0.0	-0.69	0.39	0.69	2.11	3.2	0.004	0.62	0.0	0.05	17.23	0.00	2.531	9.09	8.06	2.6	97.4	0.0	-1.81	1.17	0.32	0.70	2.26	2022	246	12	0	48	0	0	logfile
✔	9JBP	61322	2025-02-10	2024-08-27	3.18	2.96	1.89	3.2	0.003	0.70	0.0	0.05	16.94	0.00	2.424	10.13	0.00	2.6	97.4	0.0	-0.69	0.39	0.69	2.11	3.2	0.004	0.62	0.0	0.05	17.23	0.00	2.531	9.09	8.06	2.6	97.4	0.0	-1.81	1.17	0.32	0.70	2.26	2022	246	12	0	48	0	0	logfile
✔	9JBP	61322	2025-03-05	2024-08-27	3.18	2.96	1.87	4.1	0.003	0.70	0.0	0.05	16.94	0.00	2.424	10.13	0.00	2.6	97.4	0.0	-0.69	0.39	0.69	2.11	3.2	0.003	0.58	0.0	0.05	17.44	0.00	2.560	6.57	7.53	3.0	97.0	0.0	-1.64	1.16	0.32	0.70	2.98	2022	246	12	0	48	0	0	logfile
✔	9JBP	61322	2025-04-26	2024-08-27	3.18	2.96	1.87	4.1	0.003	0.70	0.0	0.05	16.94	0.00	2.424	10.13	0.00	2.6	97.4	0.0	-0.69	0.39	0.69	2.11	3.2	0.003	0.58	0.0	0.05	17.44	0.00	2.560	6.57	7.53	3.0	97.0	0.0	-1.64	1.16	0.32	0.70	2.98	2022	246	12	0	48	0	0	logfile
✔	9DCH	46751	2025-06-21	2024-08-26	3.4	4.00	3.31	2.5	0.002	0.68	2.0	0.04	14.77	0.01	2.207	9.57	2.18	8.2	91.7	0.2	-1.21	0.65	0.47	0.55	2.6	0.003	0.70	0.0	0.04	15.34	0.00	2.466	10.17	3.36	8.9	90.9	0.2	-1.63	1.13	0.74	0.59	1.16	24433	3586	15	10	14	0	0	logfile
✔	9DCH	46751	2025-05-23	2024-08-26	3.4	4.00	3.31	2.5	0.002	0.68	2.0	0.04	14.77	0.01	2.207	9.57	2.18	8.2	91.7	0.2	-1.21	0.65	0.47	0.55	2.6	0.003	0.67	0.0	0.04	15.28	0.00	2.493	8.31	3.47	8.5	91.3	0.1	-1.52	1.11	0.74	0.58	1.04	24433	3586	15	10	14	0	0	logfile
✔	9JB2	61305	2025-06-04	2024-08-26	2.9	2.11	2.74	3.0	0.003	0.43	0.0	0.05	12.57	0.00	2.256	5.91	0.27	0.9	99.1	0.0	-2.12	0.45	0.82	4.81	3.0	0.005	0.57	0.0	0.05	16.97	0.00	2.505	6.68	3.51	2.3	97.7	0.0	-2.29	0.32	0.40	0.81	4.92	3890	500	35	0	20	0	0	logfile
✔	9JB2	61305	2025-05-09	2024-08-26	2.9	2.11	2.74	3.0	0.003	0.43	0.0	0.05	12.57	0.00	2.256	5.91	0.27	0.9	99.1	0.0	-2.12	0.45	0.82	4.81	3.0	0.002	0.48	0.0	0.05	16.38	0.00	2.507	4.75	2.97	0.7	99.3	0.0	-2.12	0.32	0.39	0.80	4.60	3890	500	35	0	20	0	0	logfile
✔	9JB2	61305	2025-04-26	2024-08-26	2.9	2.11	2.74	3.0	0.003	0.43	0.0	0.05	12.57	0.00	2.256	5.91	0.27	0.9	99.1	0.0	-2.12	0.45	0.82	4.81	3.0	0.005	0.57	0.0	0.05	16.97	0.00	2.505	6.68	3.51	2.3	97.7	0.0	-2.29	0.32	0.40	0.81	4.92	3890	500	35	0	20	0	0	logfile
✔	9JB1	61304	2025-05-09	2024-08-26	2.5	2.55	2.32	2.6	0.001	0.60	0.0	0.06	19.34	0.00	2.660	7.64	0.00	0.0	100.0	0.0	-0.86	0.66	0.90	6.53	2.6	0.003	0.56	0.0	0.06	18.70	0.00	2.644	4.98	1.39	1.4	98.6	0.0	-1.22	0.88	0.66	0.91	7.27	3012	396	24	0	12	0	0	logfile

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