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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8RLD | 19339 | 2025-04-27 | 2024-01-02 | 2.84 | 2.96 | 2.86 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 12.39 | 0.00 | 1.981 | 7.12 | 0.00 | 1.2 | 98.8 | 0.0 | 1.29 | 0.45 | 0.58 | 1.50 | 3.0 | 0.004 | 0.58 | 0.0 | 0.04 | 15.43 | 0.00 | 2.337 | 7.43 | 2.13 | 3.4 | 96.6 | 0.0 | 1.32 | 0.70 | 0.50 | 0.64 | 2.35 | 6416 | 422 | 2 | 0 | 1 | 0 | 3209 | logfile |
✔ | 8RL7 | 19333 | 2025-06-14 | 2024-01-02 | 3.76 | 3.99 | 3.67 | 4.0 | 0.005 | 0.71 | 0.0 | 0.04 | 12.70 | 0.01 | 2.140 | 7.78 | 0.74 | 2.8 | 97.2 | 0.0 | 1.89 | 0.55 | 0.70 | 2.26 | 3.9 | 0.004 | 0.55 | 0.0 | 0.04 | 14.85 | 0.00 | 2.374 | 7.77 | 2.21 | 2.8 | 97.2 | 0.0 | 2.42 | 0.68 | 0.58 | 0.76 | 1.94 | 16262 | 1100 | 6 | 0 | 2 | 0 | 8042 | logfile |
✔ | 8VHZ | 43244 | 2025-05-18 | 2024-01-02 | 3.3 | 3.70 | 3.45 | 3.6 | 0.002 | 0.56 | 0.0 | 0.04 | 14.89 | 0.01 | 2.275 | 6.29 | 0.16 | 3.0 | 97.0 | 0.0 | 1.54 | 0.58 | 0.72 | 1.99 | 3.6 | 0.002 | 0.59 | 0.0 | 0.04 | 15.53 | 0.00 | 2.523 | 5.40 | 2.14 | 3.5 | 96.5 | 0.0 | 1.89 | 1.17 | 0.67 | 0.81 | 2.20 | 17208 | 2142 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8VHZ | 43244 | 2025-06-15 | 2024-01-02 | 3.3 | 3.70 | 3.45 | 3.6 | 0.002 | 0.56 | 0.0 | 0.04 | 14.89 | 0.01 | 2.275 | 6.29 | 0.16 | 3.0 | 97.0 | 0.0 | 1.54 | 0.58 | 0.72 | 1.99 | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 15.59 | 0.00 | 2.519 | 5.89 | 2.51 | 3.8 | 96.2 | 0.0 | 1.79 | 1.17 | 0.67 | 0.81 | 2.13 | 17208 | 2142 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8RL8 | 19334 | 2025-08-22 | 2024-01-02 | 2.79 | 2.21 | 2.86 | 2.9 | 0.003 | 0.59 | 0.0 | 0.04 | 12.36 | 0.00 | 2.172 | 7.38 | 0.00 | 1.2 | 98.8 | 0.0 | 1.43 | 0.65 | 0.72 | 2.63 | 2.8 | 0.003 | 0.54 | 0.0 | 0.04 | 15.38 | 0.00 | 2.449 | 6.91 | 2.41 | 1.2 | 98.8 | 0.0 | 2.81 | 1.02 | 0.66 | 0.74 | 2.97 | 6469 | 421 | 2 | 0 | 1 | 0 | 3252 | logfile |
✔ | 8RL8 | 19334 | 2025-07-24 | 2024-01-02 | 2.79 | 2.21 | 2.86 | 2.9 | 0.003 | 0.59 | 0.0 | 0.04 | 12.36 | 0.00 | 2.172 | 7.53 | 0.00 | 1.2 | 98.8 | 0.0 | 1.43 | 0.65 | 0.72 | 2.63 | 2.8 | 0.004 | 0.57 | 0.0 | 0.04 | 15.29 | 0.00 | 2.431 | 7.84 | 2.41 | 1.4 | 98.6 | 0.0 | 2.48 | 1.02 | 0.67 | 0.74 | 3.17 | 6469 | 421 | 2 | 0 | 1 | 0 | 3252 | logfile |
✔ | 8RL8 | 19334 | 2025-06-05 | 2024-01-02 | 2.79 | 2.21 | 2.86 | 2.9 | 0.003 | 0.59 | 0.0 | 0.04 | 12.36 | 0.00 | 2.172 | 7.53 | 0.00 | 1.2 | 98.8 | 0.0 | 1.43 | 0.65 | 0.72 | 2.63 | 2.8 | 0.004 | 0.57 | 0.0 | 0.04 | 15.29 | 0.00 | 2.431 | 7.84 | 2.41 | 1.4 | 98.6 | 0.0 | 2.48 | 1.02 | 0.67 | 0.74 | 3.17 | 6469 | 421 | 2 | 0 | 1 | 0 | 3252 | logfile |
✔ | 8RL8 | 19334 | 2025-05-10 | 2024-01-02 | 2.79 | 2.21 | 2.86 | 2.9 | 0.003 | 0.59 | 0.0 | 0.04 | 12.36 | 0.00 | 2.172 | 7.53 | 0.00 | 1.2 | 98.8 | 0.0 | 1.43 | 0.65 | 0.72 | 2.63 | 2.8 | 0.004 | 0.57 | 0.0 | 0.04 | 15.23 | 0.00 | 2.429 | 7.68 | 3.01 | 1.4 | 98.6 | 0.0 | 2.49 | 1.02 | 0.67 | 0.74 | 3.17 | 6469 | 421 | 2 | 0 | 1 | 0 | 3252 | logfile |
✔ | 8RL8 | 19334 | 2025-04-27 | 2024-01-02 | 2.79 | 2.21 | 2.86 | 2.9 | 0.003 | 0.59 | 0.0 | 0.04 | 12.36 | 0.00 | 2.172 | 7.53 | 0.00 | 1.2 | 98.8 | 0.0 | 1.43 | 0.65 | 0.72 | 2.63 | 2.8 | 0.004 | 0.57 | 0.0 | 0.04 | 15.29 | 0.00 | 2.431 | 7.84 | 2.41 | 1.4 | 98.6 | 0.0 | 2.48 | 1.02 | 0.67 | 0.74 | 3.17 | 6469 | 421 | 2 | 0 | 1 | 0 | 3252 | logfile |
✔ | 8RL8 | 19334 | 2025-03-11 | 2024-01-02 | 2.79 | 2.21 | 2.86 | 2.9 | 0.003 | 0.59 | 0.0 | 0.04 | 12.36 | 0.00 | 2.172 | 7.53 | 0.00 | 1.2 | 98.8 | 0.0 | 1.43 | 0.65 | 0.72 | 2.63 | 2.8 | 0.004 | 0.57 | 0.0 | 0.04 | 15.29 | 0.00 | 2.431 | 7.84 | 2.41 | 1.4 | 98.6 | 0.0 | 2.48 | 1.02 | 0.67 | 0.74 | 3.17 | 6469 | 421 | 2 | 0 | 1 | 0 | 3252 | logfile |
✔ | 8RL8 | 19334 | 2025-02-11 | 2024-01-02 | 2.79 | 2.21 | 2.86 | 2.9 | 0.003 | 0.59 | 0.0 | 0.04 | 12.36 | 0.00 | 2.172 | 7.53 | 0.00 | 1.2 | 98.8 | 0.0 | 1.43 | 0.65 | 0.72 | 2.63 | 2.8 | 0.004 | 0.57 | 0.0 | 0.04 | 15.23 | 0.00 | 2.429 | 7.68 | 3.01 | 1.4 | 98.6 | 0.0 | 2.49 | 1.02 | 0.67 | 0.74 | 3.17 | 6469 | 421 | 2 | 0 | 1 | 0 | 3252 | logfile |
✔ | 8VHT | 43241 | 2025-08-24 | 2024-01-02 | 3.2 | 3.09 | 2.92 | 3.2 | 0.003 | 0.54 | 0.0 | 0.04 | 15.27 | 0.00 | 2.215 | 4.91 | 0.00 | 2.9 | 97.1 | 0.0 | 1.23 | 0.71 | 0.84 | 2.17 | 3.1 | 0.004 | 0.62 | 0.0 | 0.04 | 15.62 | 0.00 | 2.450 | 5.67 | 2.97 | 2.3 | 97.7 | 0.0 | 1.65 | 0.40 | 0.74 | 0.88 | 2.59 | 16581 | 2055 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 8RL7 | 19333 | 2025-08-24 | 2024-01-02 | 3.76 | 3.99 | 3.67 | 4.0 | 0.005 | 0.71 | 0.0 | 0.04 | 12.70 | 0.01 | 2.140 | 7.78 | 0.74 | 2.8 | 97.2 | 0.0 | 1.89 | 0.55 | 0.70 | 2.26 | 3.9 | 0.005 | 0.59 | 0.0 | 0.04 | 14.89 | 0.00 | 2.412 | 7.84 | 2.45 | 3.7 | 96.3 | 0.0 | 2.18 | 0.68 | 0.58 | 0.76 | 1.98 | 16262 | 1100 | 6 | 0 | 2 | 0 | 8042 | logfile |
✔ | 8RL7 | 19333 | 2025-05-17 | 2024-01-02 | 3.76 | 3.99 | 3.67 | 4.0 | 0.005 | 0.71 | 0.0 | 0.04 | 12.70 | 0.01 | 2.140 | 7.78 | 0.74 | 2.8 | 97.2 | 0.0 | 1.89 | 0.55 | 0.70 | 2.26 | 3.9 | 0.004 | 0.55 | 0.0 | 0.04 | 14.88 | 0.00 | 2.373 | 7.53 | 2.57 | 2.7 | 97.3 | 0.0 | 2.44 | 0.70 | 0.58 | 0.76 | 1.90 | 16262 | 1100 | 6 | 0 | 2 | 0 | 8042 | logfile |
✔ | 8RLD | 19339 | 2025-03-11 | 2024-01-02 | 2.84 | 2.96 | 2.86 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 12.39 | 0.00 | 1.981 | 7.12 | 0.00 | 1.2 | 98.8 | 0.0 | 1.29 | 0.45 | 0.58 | 1.50 | 3.0 | 0.004 | 0.58 | 0.0 | 0.04 | 15.43 | 0.00 | 2.337 | 7.43 | 2.13 | 3.4 | 96.6 | 0.0 | 1.32 | 0.70 | 0.50 | 0.64 | 2.35 | 6416 | 422 | 2 | 0 | 1 | 0 | 3209 | logfile |
✔ | 8RLD | 19339 | 2025-02-11 | 2024-01-02 | 2.84 | 2.96 | 2.86 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 12.39 | 0.00 | 1.981 | 7.12 | 0.00 | 1.2 | 98.8 | 0.0 | 1.29 | 0.45 | 0.58 | 1.50 | 3.0 | 0.004 | 0.60 | 0.0 | 0.04 | 15.26 | 0.01 | 2.345 | 7.59 | 0.91 | 3.1 | 96.9 | 0.0 | 1.51 | 0.68 | 0.49 | 0.63 | 2.23 | 6416 | 422 | 2 | 0 | 1 | 0 | 3209 | logfile |
✔ | 8Vi0 | 43245 | 2025-08-24 | 2024-01-02 | 3.0 | 3.40 | 3.02 | 3.3 | 0.002 | 0.50 | 0.0 | 0.04 | 15.05 | 0.00 | 2.166 | 6.78 | 1.45 | 2.3 | 97.7 | 0.0 | 1.59 | 0.75 | 0.84 | 2.23 | 3.3 | 0.003 | 0.57 | 0.0 | 0.04 | 15.95 | 0.00 | 2.424 | 6.21 | 3.11 | 2.7 | 97.3 | 0.0 | 1.45 | 0.34 | 0.63 | 0.78 | 2.37 | 17454 | 2171 | 6 | 0 | 9 | 0 | 0 | logfile |
✔ | 8Vi0 | 43245 | 2025-06-15 | 2024-01-02 | 3.0 | 3.40 | 3.02 | 3.3 | 0.002 | 0.50 | 0.0 | 0.04 | 15.05 | 0.00 | 2.166 | 6.87 | 1.45 | 2.3 | 97.7 | 0.0 | 1.59 | 0.75 | 0.84 | 2.23 | 3.3 | 0.004 | 0.60 | 0.0 | 0.04 | 15.95 | 0.00 | 2.426 | 5.98 | 3.64 | 3.2 | 96.8 | 0.0 | 1.29 | 0.34 | 0.63 | 0.79 | 2.43 | 17454 | 2171 | 6 | 0 | 9 | 0 | 0 | logfile |
✔ | 8Vi0 | 43245 | 2025-05-18 | 2024-01-02 | 3.0 | 3.40 | 3.02 | 3.3 | 0.002 | 0.50 | 0.0 | 0.04 | 15.05 | 0.00 | 2.166 | 6.87 | 1.45 | 2.3 | 97.7 | 0.0 | 1.59 | 0.75 | 0.84 | 2.23 | 3.3 | 0.003 | 0.59 | 0.0 | 0.04 | 15.91 | 0.00 | 2.444 | 5.98 | 3.21 | 3.2 | 96.8 | 0.0 | 1.34 | 0.35 | 0.63 | 0.78 | 2.48 | 17454 | 2171 | 6 | 0 | 9 | 0 | 0 | logfile |
✔ | 8VHZ | 43244 | 2025-08-24 | 2024-01-02 | 3.3 | 3.70 | 3.45 | 3.6 | 0.002 | 0.56 | 0.0 | 0.04 | 14.89 | 0.01 | 2.275 | 6.32 | 0.16 | 3.0 | 97.0 | 0.0 | 1.54 | 0.58 | 0.72 | 1.99 | 3.6 | 0.004 | 0.62 | 0.0 | 0.04 | 15.57 | 0.00 | 2.512 | 6.21 | 2.25 | 4.1 | 95.9 | 0.0 | 1.47 | 0.39 | 0.68 | 0.81 | 2.34 | 17208 | 2142 | 3 | 0 | 0 | 0 | 0 | logfile |