Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VGP	43220	2024-11-14	2023-12-27	2.7	3.48	2.69	3.2	0.010	1.02	0.0	0.06	14.34	0.02	2.148	2.04	0.91	5.0	94.8	0.2	-0.76	0.91	0.90	4.54	3.2	0.005	0.76	0.0	0.05	14.70	0.00	2.284	3.67	1.63	3.3	96.6	0.2	0.45	1.17	0.86	0.87	4.38	5046	648	6	0	1	43	0	logfile
✔	8VGP	43220	2024-12-27	2023-12-27	2.7	3.48	2.69	3.2	0.010	1.02	0.0	0.06	14.34	0.02	2.148	2.04	0.91	5.0	94.8	0.2	-0.76	0.91	0.90	4.54	3.2	0.005	0.76	0.0	0.05	14.70	0.00	2.284	3.67	1.63	3.3	96.6	0.2	0.45	1.17	0.86	0.87	4.38	5046	648	6	0	1	43	0	logfile
✔	8XM7	38466	2024-11-19	2023-12-27	4.91	3.77	4.50	7.7	0.007	1.01	0.0	0.05	14.71	0.01	2.009	51.04	0.00	11.1	88.9	0.0	-2.89	0.86	0.80	—	7.7	0.004	0.77	0.0	0.05	14.79	0.01	1.989	22.88	0.00	7.1	92.9	0.0	-1.31	0.57	0.86	0.79	—	17190	2123	4	0	2	0	0	logfile
✔	8VGN	43212	2024-12-28	2023-12-27	2.5	3.15	2.50	2.9	0.006	0.83	0.0	0.05	14.29	0.01	2.290	3.35	0.78	5.1	94.5	0.3	-0.56	0.71	0.84	4.14	2.9	0.004	0.72	0.0	0.04	15.73	0.00	2.625	6.15	0.59	2.0	98.0	0.0	1.38	3.04	0.70	0.84	3.85	9150	1204	6	0	0	0	0	logfile
✔	8VGN	43212	2024-11-15	2023-12-27	2.5	3.15	2.50	2.9	0.006	0.83	0.0	0.05	14.29	0.01	2.290	3.35	0.78	5.1	94.5	0.3	-0.56	0.71	0.84	4.14	2.9	0.004	0.72	0.0	0.04	15.73	0.00	2.625	6.15	0.59	2.0	98.0	0.0	1.38	3.04	0.70	0.84	3.85	9150	1204	6	0	0	0	0	logfile
✔	8VGN	43212	2025-04-30	2023-12-27	2.5	3.15	2.51	2.9	0.006	0.83	0.0	0.05	14.29	0.01	2.290	3.35	0.78	5.1	94.5	0.3	-0.56	0.71	0.84	4.14	2.9	0.004	0.73	0.0	0.04	15.58	0.00	2.450	6.32	0.88	1.9	98.1	0.0	1.33	3.03	0.70	0.84	3.86	9150	1204	6	0	0	0	0	logfile
✔	8VGN	43212	2025-07-27	2023-12-27	2.5	3.15	2.51	2.9	0.006	0.83	0.0	0.05	14.29	0.01	2.290	3.35	0.78	5.1	94.5	0.3	-0.56	0.71	0.84	4.14	2.9	0.004	0.73	0.0	0.04	15.58	0.00	2.450	6.32	0.88	1.9	98.1	0.0	1.33	3.03	0.70	0.84	3.86	9150	1204	6	0	0	0	0	logfile
✔	8VGN	43212	2025-03-13	2023-12-27	2.5	3.15	2.51	2.9	0.006	0.83	0.0	0.05	14.29	0.01	2.290	3.35	0.78	5.1	94.5	0.3	-0.56	0.71	0.84	4.14	2.9	0.004	0.71	0.0	0.04	15.63	0.00	2.454	6.21	0.88	2.0	98.0	0.0	1.40	3.03	0.70	0.84	3.83	9150	1204	6	0	0	0	0	logfile
✔	8VGN	43212	2025-08-23	2023-12-27	2.5	3.15	2.51	2.9	0.006	0.83	0.0	0.05	14.29	0.01	2.290	3.35	0.78	5.1	94.5	0.3	-0.56	0.71	0.84	4.14	2.9	0.003	0.71	0.0	0.04	15.72	0.00	2.624	5.99	1.46	2.1	97.9	0.0	1.41	3.03	0.70	0.83	4.06	9150	1204	6	0	0	0	0	logfile
✔	8VGN	43212	2025-06-08	2023-12-27	2.5	3.15	2.51	2.9	0.006	0.83	0.0	0.05	14.29	0.01	2.290	3.35	0.78	5.1	94.5	0.3	-0.56	0.71	0.84	4.14	2.9	0.004	0.73	0.0	0.04	15.58	0.00	2.450	6.32	0.88	1.9	98.1	0.0	1.33	3.03	0.70	0.84	3.86	9150	1204	6	0	0	0	0	logfile
✔	8VGN	43212	2025-05-12	2023-12-27	2.5	3.15	2.51	2.9	0.006	0.83	0.0	0.05	14.29	0.01	2.290	3.35	0.78	5.1	94.5	0.3	-0.56	0.71	0.84	4.14	2.9	0.004	0.71	0.0	0.04	15.68	0.00	2.470	5.93	0.59	1.9	98.1	0.0	1.38	3.03	0.70	0.84	3.89	9150	1204	6	0	0	0	0	logfile
✔	8VGP	43220	2025-07-24	2023-12-27	2.7	3.48	2.69	3.2	0.010	1.02	0.0	0.06	14.34	0.02	2.148	2.04	0.91	5.0	94.8	0.2	-0.76	0.91	0.90	4.54	3.2	0.004	0.75	0.0	0.04	14.72	0.00	2.285	3.47	1.81	3.6	96.2	0.2	0.50	1.18	0.86	0.87	4.13	5046	648	6	0	1	43	0	logfile
✔	8VGP	43220	2025-04-27	2023-12-27	2.7	3.48	2.69	3.2	0.010	1.02	0.0	0.06	14.34	0.02	2.148	2.04	0.91	5.0	94.8	0.2	-0.76	0.91	0.90	4.54	3.2	0.004	0.75	0.0	0.04	14.72	0.00	2.285	3.47	1.81	3.6	96.2	0.2	0.50	1.18	0.86	0.87	4.13	5046	648	6	0	1	43	0	logfile
✔	8XMF	38475	2024-12-27	2023-12-27	3.64	4.12	3.77	4.0	0.005	0.69	0.0	0.04	19.98	0.00	1.982	9.07	0.00	5.3	94.7	0.0	1.35	0.59	0.80	2.19	4.0	0.003	0.67	0.0	0.04	16.64	0.00	1.879	9.47	6.44	4.5	95.5	0.0	1.32	0.54	0.59	0.81	1.81	4929	636	4	0	13	0	0	logfile
✔	8VGi	43201	2025-06-17	2023-12-27	2.7	3.68	2.85	3.3	0.011	1.17	0.0	0.07	13.30	0.01	2.029	4.48	0.70	6.5	93.2	0.3	-0.80	0.87	0.84	3.19	3.3	0.003	0.83	0.0	0.05	15.71	0.01	2.443	8.36	2.79	3.9	96.1	0.0	0.35	1.27	0.82	0.85	2.26	20482	2668	16	0	0	26	0	logfile
✔	8VGi	43201	2025-08-24	2023-12-27	2.7	3.68	2.85	3.3	0.011	1.17	0.0	0.07	13.30	0.01	2.029	4.43	0.70	6.5	93.2	0.3	-0.80	0.87	0.84	3.19	3.3	0.004	0.85	0.0	0.05	15.83	0.01	2.495	7.67	2.88	4.2	95.8	0.0	0.16	1.62	0.83	0.86	2.24	20482	2668	16	0	0	26	0	logfile
✔	8VGi	43201	2024-11-20	2023-12-27	2.7	3.68	2.86	3.3	0.011	1.16	0.0	0.07	13.30	0.01	2.029	4.48	0.70	6.5	93.2	0.3	-0.80	0.87	0.84	3.19	3.3	0.004	0.92	0.0	0.05	15.61	0.01	2.318	8.49	2.49	5.2	94.8	0.0	0.12	1.29	0.82	0.85	2.26	20482	2668	16	0	0	26	0	logfile
✔	8XMF	38475	2024-11-14	2023-12-27	3.64	4.12	3.77	4.0	0.005	0.69	0.0	0.04	19.98	0.00	1.982	9.07	0.00	5.3	94.7	0.0	1.35	0.59	0.80	2.19	4.0	0.003	0.67	0.0	0.04	16.64	0.00	1.879	9.47	6.44	4.5	95.5	0.0	1.32	0.54	0.59	0.81	1.81	4929	636	4	0	13	0	0	logfile
✔	8XMF	38475	2025-08-22	2023-12-27	3.64	4.12	3.75	4.0	0.015	0.69	0.0	0.04	19.98	0.00	1.982	9.07	0.00	5.3	94.7	0.0	1.35	0.59	0.80	2.19	4.1	0.003	0.65	0.0	0.04	16.28	0.00	1.857	8.87	5.63	4.7	95.3	0.0	1.38	0.99	0.59	0.80	1.87	4929	636	4	0	13	0	0	logfile
✔	8XMF	38475	2025-07-24	2023-12-27	3.64	4.12	3.75	4.0	0.015	0.69	0.0	0.04	19.98	0.00	1.982	9.07	0.00	5.3	94.7	0.0	1.35	0.59	0.80	2.19	4.1	0.003	0.64	0.0	0.04	16.31	0.00	1.863	10.08	7.04	4.2	95.8	0.0	1.39	0.53	0.59	0.81	1.88	4929	636	4	0	13	0	0	logfile

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