Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9GH6	51348	2025-06-04	2024-08-15	3.0	2.41	3.20	2.2	0.014	0.91	0.0	0.06	13.76	0.00	2.201	8.31	1.12	4.0	96.0	0.0	0.22	0.51	0.67	3.38	2.2	0.004	0.68	0.0	0.05	15.22	0.00	2.246	8.62	4.47	6.1	93.9	0.0	-0.37	0.71	0.59	0.76	2.30	3159	200	2	0	7	0	1498	logfile
✔	9D6F	46596	2025-06-05	2024-08-15	4.24	4.50	4.13	4.4	0.004	0.92	0.0	0.05	13.89	0.01	2.215	5.46	0.00	8.4	91.2	0.3	-2.08	0.68	0.76	—	4.4	0.003	0.71	0.0	0.04	13.80	0.00	2.556	6.66	0.00	7.7	92.3	0.0	-2.20	0.49	0.68	0.77	—	4672	610	5	0	0	0	0	logfile
✔	9D6F	46596	2025-04-27	2024-08-15	4.24	4.50	4.13	4.4	0.004	0.92	0.0	0.05	13.89	0.01	2.215	5.46	0.00	8.4	91.2	0.3	-2.08	0.68	0.76	—	4.4	0.003	0.71	0.0	0.04	13.80	0.00	2.556	6.66	0.00	7.7	92.3	0.0	-2.20	0.49	0.68	0.77	—	4672	610	5	0	0	0	0	logfile
✔	9D6F	46596	2025-03-06	2024-08-15	4.24	4.50	4.13	4.4	0.004	0.92	0.0	0.05	13.89	0.01	2.215	5.46	0.00	8.4	91.2	0.3	-2.08	0.68	0.76	—	4.4	0.003	0.67	0.0	0.04	14.19	0.00	2.557	6.22	0.00	6.9	93.1	0.0	-1.80	0.48	0.69	0.77	—	4672	610	5	0	0	0	0	logfile
✔	9D6F	46596	2025-02-11	2024-08-15	4.24	4.50	4.14	4.4	0.004	0.92	0.0	0.05	13.89	0.01	2.215	5.46	0.00	8.4	91.2	0.3	-2.08	0.68	0.76	—	4.4	0.004	0.73	0.0	0.04	14.20	0.00	2.546	7.54	0.00	9.8	90.2	0.0	-2.05	0.48	0.69	0.78	—	4672	610	5	0	0	0	0	logfile
✔	9GH5	51347	2025-06-09	2024-08-15	2.7	2.18	2.69	2.0	0.010	0.89	0.0	0.06	17.19	0.01	2.174	9.98	2.54	3.7	96.3	0.0	-1.47	0.70	0.78	3.86	1.9	0.007	0.76	0.0	0.05	17.38	0.00	2.403	7.71	5.80	5.3	94.7	0.0	-1.81	1.31	0.81	0.84	4.04	10383	1347	12	0	18	3	0	logfile
✔	9GH5	51347	2025-05-13	2024-08-15	2.7	2.18	2.69	2.0	0.010	0.89	0.0	0.06	17.19	0.01	2.174	9.98	2.54	3.7	96.3	0.0	-1.47	0.70	0.78	3.86	1.9	0.005	0.72	0.0	0.05	17.36	0.00	2.431	7.27	5.62	4.4	95.6	0.0	-1.63	1.31	0.81	0.84	3.98	10383	1347	12	0	18	3	0	logfile
✔	9GH4	51346	2025-05-10	2024-08-15	3.8	2.34	3.66	3.5	0.002	0.60	0.0	0.04	16.59	0.00	2.220	7.84	1.06	2.4	97.6	0.0	-2.02	0.69	0.70	1.25	2.2	0.004	0.70	0.0	0.05	17.48	0.00	2.501	13.59	4.94	6.7	93.3	0.0	-3.43	1.07	0.76	0.74	2.19	5454	750	3	0	0	0	0	logfile
✔	9GH4	51346	2025-06-05	2024-08-15	3.8	2.34	3.66	3.5	0.002	0.60	0.0	0.04	16.59	0.00	2.220	7.84	1.06	2.4	97.6	0.0	-2.02	0.69	0.70	1.25	2.2	0.005	0.74	0.0	0.05	17.68	0.00	2.482	14.92	5.47	7.8	92.2	0.0	-3.54	1.08	0.75	0.74	2.29	5454	750	3	0	0	0	0	logfile
✔	9GH4	51346	2025-04-27	2024-08-15	3.8	2.34	3.66	3.5	0.002	0.60	0.0	0.04	16.59	0.00	2.220	7.84	1.06	2.4	97.6	0.0	-2.02	0.69	0.70	1.25	2.2	0.005	0.74	0.0	0.05	17.68	0.00	2.482	14.92	5.47	7.8	92.2	0.0	-3.54	1.08	0.75	0.74	2.29	5454	750	3	0	0	0	0	logfile
✔	9D68	46589	2025-03-05	2024-08-14	2.58	2.77	2.59	2.8	0.003	0.55	0.0	0.04	16.08	0.00	2.112	3.30	0.28	1.0	99.0	0.0	1.51	0.51	0.87	3.43	2.8	0.003	0.52	0.0	0.04	16.78	0.00	2.143	6.90	2.26	0.7	99.3	0.0	2.14	0.31	0.49	0.86	2.94	3242	426	3	0	2	6	0	logfile
✔	9J60	61158	2025-06-18	2024-08-14	2.7	3.00	2.85	3.1	0.004	0.62	0.0	0.04	13.42	0.00	1.836	3.29	0.96	4.7	95.3	0.0	-0.84	0.67	0.83	4.50	3.1	0.006	0.63	0.0	0.04	14.43	0.00	2.337	2.05	1.30	6.3	93.7	0.0	-0.88	0.40	0.67	0.84	4.25	20967	1354	2	0	0	0	10175	logfile
✔	9D6A	46591	2025-06-04	2024-08-14	2.6	2.76	2.61	2.8	0.003	0.48	0.0	0.04	15.56	0.00	2.057	3.14	0.00	1.8	98.2	0.0	1.00	0.51	0.87	3.86	2.8	0.003	0.50	0.0	0.04	16.59	0.00	2.182	6.27	1.18	1.5	98.5	0.0	2.16	0.35	0.50	0.86	3.05	3105	407	3	0	4	9	0	logfile
✔	9D6A	46591	2025-03-05	2024-08-14	2.6	2.76	2.61	2.8	0.003	0.48	0.0	0.04	15.56	0.00	2.057	3.14	0.00	1.8	98.2	0.0	1.00	0.51	0.87	3.86	2.8	0.003	0.50	0.0	0.04	16.59	0.00	2.182	6.27	1.18	1.5	98.5	0.0	2.16	0.35	0.50	0.86	3.05	3105	407	3	0	4	9	0	logfile
✔	9D6A	46591	2025-02-10	2024-08-14	2.6	2.76	2.62	2.8	0.003	0.48	0.0	0.04	15.56	0.00	2.057	3.14	0.00	1.8	98.2	0.0	1.00	0.51	0.87	3.86	2.8	0.003	0.51	0.0	0.04	16.54	0.00	2.183	6.12	1.18	1.5	98.5	0.0	2.06	0.34	0.49	0.86	2.95	3105	407	3	0	4	9	0	logfile
✔	9D6A	46591	2025-04-26	2024-08-14	2.6	2.76	2.61	2.8	0.003	0.48	0.0	0.04	15.56	0.00	2.057	3.14	0.00	1.8	98.2	0.0	1.00	0.51	0.87	3.86	2.8	0.003	0.50	0.0	0.04	16.59	0.00	2.182	6.27	1.18	1.5	98.5	0.0	2.16	0.35	0.50	0.86	3.05	3105	407	3	0	4	9	0	logfile
✔	9D6A	46591	2025-05-09	2024-08-14	2.6	2.76	2.61	2.8	0.003	0.48	0.0	0.04	15.56	0.00	2.057	3.14	0.00	1.8	98.2	0.0	1.00	0.51	0.87	3.86	2.8	0.003	0.51	0.0	0.04	16.54	0.00	2.183	6.12	1.18	1.5	98.5	0.0	2.06	0.34	0.49	0.86	2.95	3105	407	3	0	4	9	0	logfile
✔	9D61	46585	2025-05-10	2024-08-14	3.58	3.05	—	3.8	0.004	0.74	0.0	0.05	12.93	0.00	2.249	5.72	0.00	6.7	93.3	0.0	-1.57	0.67	0.63	0.77	3.8	0.003	0.79	0.0	0.04	16.34	0.00	2.506	13.57	2.62	5.9	94.1	0.0	-0.54	0.91	0.68	0.66	0.85	6895	903	5	0	1	0	0	logfile
✔	9D61	46585	2025-06-06	2024-08-14	3.58	3.05	—	3.8	0.004	0.74	0.0	0.05	12.93	0.00	2.249	5.72	0.00	6.7	93.3	0.0	-1.57	0.67	0.63	0.77	3.8	0.004	0.76	0.0	0.04	16.22	0.00	2.482	12.91	3.03	6.3	93.7	0.0	-0.47	0.90	0.69	0.66	1.38	6895	903	5	0	1	0	0	logfile
✔	9D68	46589	2025-06-04	2024-08-14	2.58	2.77	2.59	2.8	0.003	0.55	0.0	0.04	16.08	0.00	2.112	3.30	0.28	1.0	99.0	0.0	1.51	0.51	0.87	3.43	2.8	0.003	0.52	0.0	0.04	16.78	0.00	2.143	6.90	2.26	0.7	99.3	0.0	2.14	0.31	0.49	0.86	2.94	3242	426	3	0	2	6	0	logfile

• ← previous
• Page 81 of 5208
• next →