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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 9J14 | 61067 | 2025-05-11 | 2024-08-03 | 3.49 | 3.71 | 3.52 | 3.8 | 0.004 | 0.81 | 0.0 | 0.04 | 16.00 | 0.00 | 1.674 | 9.86 | 0.26 | 10.9 | 89.1 | 0.0 | -0.73 | 0.62 | 0.82 | 1.41 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 16.11 | 0.00 | 2.454 | 5.07 | 3.66 | 11.1 | 88.9 | 0.0 | -0.09 | 0.55 | 0.65 | 0.84 | 2.16 | 7218 | 970 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 9J18 | 61071 | 2025-04-28 | 2024-08-03 | 3.5 | 3.78 | 3.57 | 3.9 | 0.005 | 0.93 | 4.0 | 0.06 | 15.23 | 0.00 | 2.105 | 10.02 | 0.55 | 10.8 | 89.2 | 0.0 | -1.88 | 0.58 | 0.80 | 1.48 | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 15.61 | 0.00 | 2.294 | 5.12 | 3.97 | 10.1 | 89.9 | 0.0 | -0.76 | 1.18 | 0.56 | 0.79 | 1.02 | 6944 | 930 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 9J16 | 61069 | 2025-06-06 | 2024-08-03 | 3.4 | 3.63 | 3.45 | 3.6 | 0.007 | 0.97 | 0.0 | 0.06 | 9.60 | 0.01 | 2.342 | 1.46 | 0.00 | 8.2 | 91.8 | 0.0 | -6.55 | 0.61 | 0.83 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7458 | 1008 | 6 | 2 | 0 | 2 | 0 | logfile |
✔ | 9J18 | 61071 | 2025-05-10 | 2024-08-03 | 3.5 | 3.78 | 3.57 | 3.9 | 0.005 | 0.93 | 4.0 | 0.06 | 15.23 | 0.00 | 2.105 | 10.02 | 0.55 | 10.8 | 89.2 | 0.0 | -1.88 | 0.58 | 0.80 | 1.48 | 3.9 | 0.002 | 0.68 | 0.0 | 0.04 | 15.59 | 0.00 | 2.360 | 5.12 | 3.01 | 10.1 | 89.9 | 0.0 | -0.79 | 1.18 | 0.56 | 0.78 | 1.02 | 6944 | 930 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 9J12 | 61065 | 2025-05-11 | 2024-08-03 | 3.9 | 4.27 | 4.12 | 4.3 | 0.003 | 0.86 | 1.0 | 0.04 | 14.03 | 0.01 | 2.142 | 10.98 | 0.00 | 8.0 | 92.0 | 0.0 | -2.39 | 0.57 | 0.76 | 1.08 | 4.3 | 0.003 | 0.76 | 0.0 | 0.04 | 15.47 | 0.00 | 2.488 | 8.65 | 3.42 | 5.6 | 94.4 | 0.0 | -1.04 | 0.67 | 0.57 | 0.77 | 1.16 | 7441 | 1007 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 9J12 | 61065 | 2025-04-28 | 2024-08-03 | 3.9 | 4.27 | 4.12 | 4.3 | 0.003 | 0.86 | 1.0 | 0.04 | 14.03 | 0.01 | 2.142 | 10.98 | 0.00 | 8.0 | 92.0 | 0.0 | -2.39 | 0.57 | 0.76 | 1.08 | 4.3 | 0.003 | 0.81 | 0.0 | 0.04 | 15.55 | 0.00 | 2.484 | 9.52 | 3.93 | 6.4 | 93.6 | 0.0 | -1.27 | 0.69 | 0.58 | 0.78 | 1.10 | 7441 | 1007 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 9J12 | 61065 | 2025-06-06 | 2024-08-03 | 3.9 | 4.27 | 4.12 | 4.3 | 0.003 | 0.86 | 1.0 | 0.04 | 14.03 | 0.01 | 2.142 | 10.98 | 0.00 | 8.0 | 92.0 | 0.0 | -2.39 | 0.57 | 0.76 | 1.08 | 4.3 | 0.003 | 0.81 | 0.0 | 0.04 | 15.55 | 0.00 | 2.484 | 9.52 | 3.93 | 6.4 | 93.6 | 0.0 | -1.27 | 0.69 | 0.58 | 0.78 | 1.10 | 7441 | 1007 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 9J16 | 61069 | 2025-04-28 | 2024-08-03 | 3.4 | 3.63 | 3.45 | 3.6 | 0.007 | 0.97 | 0.0 | 0.06 | 9.60 | 0.01 | 2.342 | 1.46 | 0.00 | 8.2 | 91.8 | 0.0 | -6.55 | 0.61 | 0.83 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7458 | 1008 | 6 | 2 | 0 | 2 | 0 | logfile |
✔ | 9J18 | 61071 | 2025-06-06 | 2024-08-03 | 3.5 | 3.78 | 3.57 | 3.9 | 0.005 | 0.93 | 4.0 | 0.06 | 15.23 | 0.00 | 2.105 | 10.02 | 0.55 | 10.8 | 89.2 | 0.0 | -1.88 | 0.58 | 0.80 | 1.48 | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 15.61 | 0.00 | 2.294 | 5.12 | 3.97 | 10.1 | 89.9 | 0.0 | -0.76 | 1.18 | 0.56 | 0.79 | 1.02 | 6944 | 930 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 9CZ3 | 46060 | 2025-06-05 | 2024-08-03 | 2.7 | 3.45 | 2.66 | 2.2 | 0.020 | 1.86 | 0.0 | 0.12 | 25.03 | 0.02 | 2.701 | 0.17 | 0.00 | 1.1 | 98.9 | 0.0 | 2.48 | 0.56 | 0.81 | 5.99 | 2.3 | 0.100 | 2.85 | 0.0 | 0.16 | 29.74 | 0.01 | 1.742 | 51.09 | 20.00 | 11.1 | 88.9 | 0.0 | -1.38 | 3.79 | 0.58 | 0.82 | 3.60 | 5580 | 270 | 90 | 0 | 90 | 0 | 3150 | logfile |
✔ | 9CZ3 | 46060 | 2025-05-10 | 2024-08-03 | 2.7 | 3.45 | 2.66 | 2.2 | 0.020 | 1.86 | 0.0 | 0.12 | 25.03 | 0.02 | 2.701 | 0.17 | 0.00 | 1.1 | 98.9 | 0.0 | 2.48 | 0.56 | 0.81 | 5.99 | 2.3 | 0.100 | 2.85 | 0.0 | 0.16 | 29.74 | 0.01 | 1.743 | 51.09 | 20.00 | 11.1 | 88.9 | 0.0 | -1.37 | 3.79 | 0.58 | 0.82 | 3.60 | 5580 | 270 | 90 | 0 | 90 | 0 | 3150 | logfile |
✔ | 9J0X | 61061 | 2025-05-21 | 2024-08-03 | 3.0 | 3.56 | 3.04 | 3.5 | 0.005 | 1.03 | 4.0 | 0.06 | 13.89 | 0.01 | 1.217 | 8.65 | 0.00 | 9.1 | 90.9 | 0.0 | -4.85 | 0.70 | 0.83 | 2.71 | 3.5 | 0.003 | 0.75 | 0.0 | 0.04 | 15.85 | 0.00 | 2.394 | 8.06 | 1.88 | 8.2 | 91.8 | 0.0 | -1.17 | 0.62 | 0.70 | 0.85 | 2.41 | 22042 | 2714 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 9J0X | 61061 | 2025-06-19 | 2024-08-03 | 3.0 | 3.56 | 3.04 | 3.5 | 0.005 | 1.03 | 4.0 | 0.06 | 13.89 | 0.01 | 1.217 | 8.65 | 0.00 | 9.1 | 90.9 | 0.0 | -4.85 | 0.70 | 0.83 | 2.71 | 3.5 | 0.003 | 0.74 | 0.0 | 0.04 | 15.88 | 0.00 | 2.340 | 8.31 | 1.92 | 8.1 | 91.9 | 0.0 | -1.14 | 0.63 | 0.70 | 0.85 | 2.35 | 22042 | 2714 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 9CZ3 | 46060 | 2025-03-06 | 2024-08-03 | 2.7 | 3.45 | 2.66 | 2.2 | 0.014 | 1.86 | 0.0 | 0.12 | 25.03 | 0.02 | 2.701 | 0.17 | 0.00 | 1.1 | 98.9 | 0.0 | 2.48 | 0.56 | 0.81 | 5.99 | 2.3 | 0.060 | 2.85 | 0.0 | 0.16 | 29.74 | 0.01 | 1.742 | 51.09 | 20.00 | 11.1 | 88.9 | 0.0 | -1.38 | 3.79 | 0.58 | 0.82 | 3.60 | 5580 | 270 | 90 | 0 | 90 | 0 | 3150 | logfile |
✔ | 9CZ3 | 46060 | 2025-04-27 | 2024-08-03 | 2.7 | 3.45 | 2.66 | 2.2 | 0.020 | 1.86 | 0.0 | 0.12 | 25.03 | 0.02 | 2.701 | 0.17 | 0.00 | 1.1 | 98.9 | 0.0 | 2.48 | 0.56 | 0.81 | 5.99 | 2.3 | 0.100 | 2.85 | 0.0 | 0.16 | 29.74 | 0.01 | 1.742 | 51.09 | 20.00 | 11.1 | 88.9 | 0.0 | -1.38 | 3.79 | 0.58 | 0.82 | 3.60 | 5580 | 270 | 90 | 0 | 90 | 0 | 3150 | logfile |
✔ | 9J0Y | 61062 | 2025-05-13 | 2024-08-03 | 3.14 | 3.39 | 3.13 | 3.4 | 0.006 | 0.99 | 0.0 | 0.06 | 14.83 | 0.01 | 1.596 | 4.14 | 0.00 | 8.2 | 91.8 | 0.0 | -5.36 | 0.62 | 0.86 | 3.58 | 3.4 | 0.003 | 0.70 | 0.0 | 0.04 | 16.05 | 0.00 | 2.503 | 6.24 | 1.98 | 7.5 | 92.5 | 0.0 | -0.81 | 0.61 | 0.61 | 0.87 | 2.75 | 10936 | 1300 | 5 | 0 | 4 | 0 | 0 | logfile |
✔ | 9J0Y | 61062 | 2025-06-09 | 2024-08-03 | 3.14 | 3.39 | 3.13 | 3.4 | 0.006 | 0.99 | 0.0 | 0.06 | 14.83 | 0.01 | 1.596 | 4.14 | 0.00 | 8.2 | 91.8 | 0.0 | -5.36 | 0.62 | 0.86 | 3.58 | 3.4 | 0.004 | 0.70 | 0.0 | 0.04 | 16.19 | 0.00 | 2.492 | 6.33 | 2.33 | 8.1 | 91.9 | 0.0 | -1.16 | 0.58 | 0.62 | 0.87 | 3.03 | 10936 | 1300 | 5 | 0 | 4 | 0 | 0 | logfile |
✔ | 9J0Z | 61063 | 2025-05-16 | 2024-08-03 | 2.6 | 3.31 | 2.92 | 3.2 | 0.016 | 1.42 | 5.0 | 0.08 | 14.85 | 0.01 | 1.304 | 11.59 | 0.00 | 9.2 | 90.7 | 0.1 | -5.23 | 0.57 | 0.77 | 3.54 | 3.2 | 0.005 | 0.73 | 0.0 | 0.05 | 16.12 | 0.00 | 2.506 | 7.75 | 2.04 | 6.5 | 93.4 | 0.1 | -1.21 | 1.08 | 0.55 | 0.77 | 2.84 | 14828 | 1779 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 9J17 | 61070 | 2025-06-06 | 2024-08-03 | 3.4 | 3.79 | 3.56 | 3.9 | 0.003 | 1.11 | 8.0 | 0.09 | 15.66 | 0.00 | 1.191 | 10.78 | 0.54 | 9.4 | 90.6 | 0.0 | -1.32 | 0.56 | 0.79 | 2.07 | 3.9 | 0.003 | 0.62 | 0.0 | 0.04 | 16.32 | 0.00 | 2.446 | 5.81 | 4.17 | 9.8 | 90.2 | 0.0 | -0.37 | 0.36 | 0.59 | 0.81 | 2.33 | 7052 | 944 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 9J13 | 61066 | 2025-04-28 | 2024-08-03 | 3.4 | 3.75 | 3.49 | 3.8 | 0.006 | 0.87 | 2.0 | 0.07 | 13.30 | 0.00 | 2.139 | 7.65 | 0.25 | 8.0 | 92.0 | 0.0 | -1.46 | 0.62 | 0.83 | 2.18 | 3.8 | 0.002 | 0.54 | 0.0 | 0.04 | 14.84 | 0.00 | 2.505 | 5.12 | 1.52 | 6.1 | 93.9 | 0.0 | -0.33 | 1.15 | 0.63 | 0.85 | 2.01 | 7440 | 1008 | 2 | 0 | 0 | 0 | 0 | logfile |