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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8UTU | 42550 | 2025-05-15 | 2023-10-31 | 3.0 | 2.25 | 2.97 | 2.2 | 0.006 | 0.97 | 1.0 | 0.05 | 18.78 | 0.01 | 1.969 | 5.30 | 1.50 | 3.7 | 96.1 | 0.2 | -0.42 | 0.57 | 0.83 | 3.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13615 | 1709 | 9 | 1 | 7 | 0 | 0 | logfile |
✔ | 8UTo | 42544 | 2025-01-25 | 2023-10-31 | 3.2 | 2.44 | 3.17 | 3.3 | 0.005 | 0.81 | 0.0 | 0.05 | 18.60 | 0.01 | 1.940 | 3.67 | 0.59 | 3.8 | 95.9 | 0.3 | -0.12 | 0.64 | 0.84 | 3.00 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 17.19 | 0.00 | 1.913 | 5.23 | 2.22 | 3.4 | 96.4 | 0.2 | 0.70 | 0.94 | 0.65 | 0.86 | 2.69 | 23792 | 2982 | 16 | 2 | 11 | 0 | 0 | logfile |
✔ | 8UTR | 42547 | 2025-02-14 | 2023-10-31 | 3.3 | 2.47 | 3.29 | 3.4 | 0.004 | 0.78 | 0.0 | 0.05 | 18.17 | 0.01 | 1.777 | 3.27 | 0.66 | 4.2 | 95.6 | 0.2 | 0.03 | 0.59 | 0.84 | 3.09 | 3.4 | 0.003 | 0.63 | 0.0 | 0.04 | 17.19 | 0.00 | 1.977 | 5.24 | 1.80 | 3.8 | 96.2 | 0.0 | 0.73 | 0.47 | 0.60 | 0.85 | 2.77 | 9792 | 1230 | 7 | 1 | 4 | 0 | 0 | logfile |
✔ | 8UTS | 42548 | 2025-01-16 | 2023-10-31 | 2.7 | 2.00 | 2.74 | 3.3 | 0.005 | 0.84 | 0.0 | 0.05 | 18.95 | 0.01 | 1.992 | 5.05 | 2.56 | 5.4 | 93.8 | 0.8 | -0.21 | 0.62 | 0.77 | 2.51 | 3.2 | 0.005 | 0.72 | 0.0 | 0.05 | 17.76 | 0.01 | 1.896 | 9.32 | 3.50 | 5.7 | 94.2 | 0.1 | -0.12 | 0.73 | 0.63 | 0.84 | 2.13 | 9748 | 1227 | 6 | 1 | 3 | 0 | 0 | logfile |
✔ | 8UTR | 42547 | 2025-07-28 | 2023-10-31 | 3.3 | 2.47 | 3.29 | 3.4 | 0.004 | 0.78 | 0.0 | 0.05 | 18.17 | 0.01 | 1.777 | 3.27 | 0.66 | 4.2 | 95.6 | 0.2 | 0.03 | 0.59 | 0.84 | 3.09 | 3.4 | 0.004 | 0.64 | 0.0 | 0.04 | 17.02 | 0.00 | 1.988 | 5.08 | 1.70 | 3.8 | 96.2 | 0.0 | 0.85 | 0.46 | 0.60 | 0.85 | 2.81 | 9792 | 1230 | 7 | 1 | 4 | 0 | 0 | logfile |
✔ | 8UTR | 42547 | 2025-06-08 | 2023-10-31 | 3.3 | 2.47 | 3.29 | 3.4 | 0.004 | 0.78 | 0.0 | 0.05 | 18.17 | 0.01 | 1.777 | 3.27 | 0.66 | 4.2 | 95.6 | 0.2 | 0.03 | 0.59 | 0.84 | 3.09 | 3.4 | 0.004 | 0.64 | 0.0 | 0.04 | 17.02 | 0.00 | 1.988 | 5.08 | 1.70 | 3.8 | 96.2 | 0.0 | 0.85 | 0.46 | 0.60 | 0.85 | 2.81 | 9792 | 1230 | 7 | 1 | 4 | 0 | 0 | logfile |
✔ | 8UTS | 42548 | 2025-02-14 | 2023-10-31 | 2.7 | 2.00 | 2.74 | 3.3 | 0.005 | 0.84 | 0.0 | 0.05 | 18.95 | 0.01 | 1.992 | 5.05 | 2.56 | 5.4 | 93.8 | 0.8 | -0.21 | 0.62 | 0.77 | 2.51 | 3.2 | 0.005 | 0.72 | 0.0 | 0.05 | 17.76 | 0.01 | 1.896 | 9.32 | 3.50 | 5.7 | 94.2 | 0.1 | -0.12 | 0.73 | 0.63 | 0.84 | 2.13 | 9748 | 1227 | 6 | 1 | 3 | 0 | 0 | logfile |
✔ | 8UTR | 42547 | 2025-01-16 | 2023-10-31 | 3.3 | 2.47 | 3.29 | 3.4 | 0.004 | 0.78 | 0.0 | 0.05 | 18.17 | 0.01 | 1.777 | 3.27 | 0.66 | 4.2 | 95.6 | 0.2 | 0.03 | 0.59 | 0.84 | 3.09 | 3.4 | 0.003 | 0.63 | 0.0 | 0.04 | 17.19 | 0.00 | 1.977 | 5.24 | 1.80 | 3.8 | 96.2 | 0.0 | 0.73 | 0.47 | 0.60 | 0.85 | 2.77 | 9792 | 1230 | 7 | 1 | 4 | 0 | 0 | logfile |
✔ | 8UTV | 42551 | 2024-11-17 | 2023-10-31 | 3.0 | 2.58 | 3.11 | 3.2 | 0.005 | 0.85 | 0.0 | 0.05 | 17.97 | 0.01 | 2.091 | 4.84 | 0.70 | 4.1 | 95.9 | 0.1 | -0.10 | 0.59 | 0.82 | 3.19 | 3.3 | 0.004 | 0.77 | 1.0 | 0.05 | 17.37 | 0.00 | 2.142 | 8.61 | 2.09 | 4.0 | 96.0 | 0.0 | 0.43 | 1.39 | 0.60 | 0.86 | 2.90 | 13337 | 1679 | 9 | 1 | 6 | 0 | 0 | logfile |
✔ | 8R0o | 18799 | 2025-06-10 | 2023-10-31 | 2.3 | 2.49 | 2.34 | 2.5 | 0.013 | 1.46 | 0.0 | 0.08 | 13.73 | 0.02 | 2.186 | 7.80 | 0.97 | 1.3 | 98.6 | 0.1 | -1.22 | 0.69 | 0.90 | 6.26 | 2.5 | 0.002 | 0.52 | 0.0 | 0.04 | 12.84 | 0.00 | 2.616 | 5.31 | 1.77 | 1.2 | 98.7 | 0.1 | 3.88 | 0.51 | 0.67 | 0.88 | 4.82 | 11777 | 1415 | 15 | 0 | 10 | 343 | 0 | logfile |
✔ | 8R0T | 18803 | 2025-06-10 | 2023-10-31 | 3.9 | 4.57 | 3.97 | 4.2 | 0.005 | 1.10 | 9.0 | 0.07 | 15.94 | 0.01 | 1.670 | 27.69 | 6.85 | 7.6 | 92.4 | 0.0 | -2.77 | 0.72 | 0.50 | 0.28 | 4.2 | 0.003 | 0.87 | 0.0 | 0.05 | 15.98 | 0.01 | 2.234 | 16.53 | 3.46 | 10.1 | 89.9 | 0.0 | -2.85 | 1.05 | 0.82 | 0.68 | 0.57 | 11461 | 1534 | 8 | 0 | 11 | 0 | 0 | logfile |
✔ | 8R0T | 18803 | 2025-07-29 | 2023-10-31 | 3.9 | 4.57 | 3.97 | 4.2 | 0.005 | 1.10 | 9.0 | 0.07 | 15.94 | 0.01 | 1.670 | 27.69 | 6.85 | 7.6 | 92.4 | 0.0 | -2.77 | 0.72 | 0.50 | 0.28 | 4.2 | 0.003 | 0.87 | 0.0 | 0.05 | 15.98 | 0.01 | 2.234 | 16.53 | 3.46 | 10.1 | 89.9 | 0.0 | -2.85 | 1.05 | 0.82 | 0.68 | 0.57 | 11461 | 1534 | 8 | 0 | 11 | 0 | 0 | logfile |
✔ | 8R0o | 18799 | 2025-08-23 | 2023-10-31 | 2.3 | 2.49 | 2.34 | 2.5 | 0.013 | 1.46 | 0.0 | 0.08 | 13.73 | 0.02 | 2.186 | 7.75 | 0.97 | 1.3 | 98.6 | 0.1 | -1.22 | 0.69 | 0.90 | 6.26 | 2.5 | 0.003 | 0.56 | 0.0 | 0.04 | 12.93 | 0.00 | 2.596 | 5.23 | 2.04 | 1.0 | 98.9 | 0.1 | 3.57 | 0.50 | 0.68 | 0.88 | 5.04 | 11777 | 1415 | 15 | 0 | 10 | 343 | 0 | logfile |
✔ | 8WYH | 37928 | 2024-12-26 | 2023-10-31 | 3.0 | 3.17 | 3.03 | 3.1 | 0.013 | 1.86 | 3.0 | 0.11 | 24.31 | 0.05 | 2.200 | 41.88 | 35.11 | 24.6 | 62.8 | 12.5 | -7.18 | 0.62 | 0.67 | 1.90 | 3.1 | 0.004 | 0.95 | 1.0 | 0.04 | 19.01 | 0.01 | 2.074 | 11.87 | 3.43 | 9.0 | 90.5 | 0.5 | -2.52 | 3.61 | 0.66 | 0.69 | 2.22 | 38852 | 4880 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8R0o | 18799 | 2025-07-29 | 2023-10-31 | 2.3 | 2.49 | 2.34 | 2.5 | 0.013 | 1.46 | 0.0 | 0.08 | 13.73 | 0.02 | 2.186 | 7.80 | 0.97 | 1.3 | 98.6 | 0.1 | -1.22 | 0.69 | 0.90 | 6.26 | 2.5 | 0.002 | 0.52 | 0.0 | 0.04 | 12.84 | 0.00 | 2.616 | 5.31 | 1.77 | 1.2 | 98.7 | 0.1 | 3.88 | 0.51 | 0.67 | 0.88 | 4.82 | 11777 | 1415 | 15 | 0 | 10 | 343 | 0 | logfile |
✔ | 8R0T | 18803 | 2025-05-14 | 2023-10-31 | 3.9 | 4.57 | 3.97 | 4.2 | 0.005 | 1.10 | 9.0 | 0.07 | 15.94 | 0.01 | 1.670 | 27.69 | 6.85 | 7.6 | 92.4 | 0.0 | -2.77 | 0.72 | 0.50 | 0.28 | 4.2 | 0.007 | 1.35 | 1.0 | 0.06 | 15.94 | 0.01 | 2.045 | 18.46 | 3.71 | 9.2 | 90.8 | 0.0 | -2.82 | 1.06 | 0.81 | 0.67 | 0.60 | 11461 | 1534 | 8 | 0 | 11 | 0 | 0 | logfile |
✔ | 8UTY | 42553 | 2025-01-25 | 2023-10-31 | 3.3 | 2.75 | 3.27 | 3.5 | 0.006 | 0.88 | 0.0 | 0.05 | 18.43 | 0.01 | 1.941 | 5.20 | 1.45 | 4.4 | 94.8 | 0.8 | -0.11 | 0.56 | 0.83 | 2.61 | 3.4 | 0.004 | 0.78 | 1.0 | 0.04 | 16.57 | 0.00 | 1.912 | 7.48 | 2.27 | 3.2 | 96.7 | 0.1 | 0.98 | 1.38 | 0.57 | 0.84 | 2.33 | 23765 | 2979 | 16 | 2 | 11 | 0 | 0 | logfile |
✔ | 8UTY | 42553 | 2025-06-20 | 2023-10-31 | 3.3 | 2.75 | 3.27 | 3.5 | 0.006 | 0.88 | 0.0 | 0.05 | 18.43 | 0.01 | 1.941 | 5.20 | 1.45 | 4.4 | 94.8 | 0.8 | -0.11 | 0.56 | 0.83 | 2.61 | 3.4 | 0.004 | 0.77 | 1.0 | 0.04 | 16.70 | 0.00 | 1.770 | 7.68 | 2.46 | 3.3 | 96.6 | 0.1 | 0.87 | 1.37 | 0.57 | 0.84 | 2.39 | 23765 | 2979 | 16 | 2 | 11 | 0 | 0 | logfile |
✔ | 8UTY | 42553 | 2025-08-24 | 2023-10-31 | 3.3 | 2.75 | 3.27 | 3.5 | 0.006 | 0.88 | 0.0 | 0.05 | 18.43 | 0.01 | 1.941 | 5.20 | 1.45 | 4.4 | 94.8 | 0.8 | -0.11 | 0.56 | 0.83 | 2.61 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 16.63 | 0.00 | 1.887 | 6.52 | 2.77 | 3.5 | 96.4 | 0.1 | 0.83 | 1.39 | 0.57 | 0.84 | 2.38 | 23765 | 2979 | 16 | 2 | 11 | 0 | 0 | logfile |
✔ | 8UTY | 42553 | 2025-05-23 | 2023-10-31 | 3.3 | 2.75 | 3.27 | 3.5 | 0.006 | 0.88 | 0.0 | 0.05 | 18.43 | 0.01 | 1.941 | 5.20 | 1.45 | 4.4 | 94.8 | 0.8 | -0.11 | 0.56 | 0.83 | 2.61 | 3.4 | 0.004 | 0.78 | 1.0 | 0.04 | 16.57 | 0.00 | 1.912 | 7.48 | 2.27 | 3.2 | 96.7 | 0.1 | 0.98 | 1.38 | 0.57 | 0.84 | 2.33 | 23765 | 2979 | 16 | 2 | 11 | 0 | 0 | logfile |