Table showing results for January 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XBH	38218	2024-01-18	2023-12-06	2.83	2.95	2.88	3.0	0.004	0.70	0.0	0.04	13.23	0.00	2.151	10.57	0.00	3.8	96.1	0.1	0.30	0.49	0.70	2.33	3.1	0.003	0.68	0.0	0.04	16.57	0.00	2.174	11.87	2.36	3.7	96.2	0.1	0.38	0.51	0.52	0.74	1.75	8947	1137	6	0	1	0	0	logfile
✔	8R8D	18999	2024-01-18	2023-11-29	2.6	2.88	2.59	2.9	0.003	0.67	0.0	0.05	14.83	0.01	2.232	7.33	0.00	4.3	95.7	0.0	0.10	0.70	0.81	2.80	2.9	0.004	1.03	0.0	0.05	15.16	0.01	2.182	8.92	3.31	4.6	95.4	0.0	0.33	0.31	0.67	0.82	3.09	7062	920	14	0	12	18	0	logfile
✔	8R3T	18874	2024-01-17	2023-11-10	3.1	3.18	2.95	3.4	0.011	2.12	6.0	0.11	14.98	0.01	2.582	0.55	5.45	2.0	96.2	1.8	-1.86	0.37	0.73	5.38	3.4	0.004	0.70	0.0	0.05	13.99	0.00	2.153	4.79	2.24	5.3	94.4	0.3	-2.83	1.75	0.41	0.77	5.24	5438	354	6	0	0	0	2804	logfile
✔	8UW3	42637	2024-01-19	2023-11-06	3.2	3.11	3.18	3.2	0.006	0.64	0.0	0.04	17.00	0.00	1.850	8.61	2.51	5.4	94.5	0.1	0.74	0.79	0.79	2.52	3.2	0.004	0.59	0.0	0.04	18.17	0.00	2.141	13.32	2.33	4.8	95.1	0.1	0.88	0.98	0.82	0.84	2.32	12005	1265	4	73	1	0	0	logfile
✔	8WX2	37898	2024-01-17	2023-10-27	3.44	3.85	3.44	3.7	0.002	0.65	0.0	0.04	14.51	0.01	2.171	8.01	1.99	6.5	93.0	0.5	-2.25	0.56	0.68	0.73	3.7	0.004	0.87	0.0	0.05	16.84	0.01	2.098	14.57	3.56	8.0	92.0	0.0	0.50	0.66	0.60	0.75	0.81	6800	880	2	0	0	0	0	logfile
✔	8WX5	37901	2024-01-17	2023-10-27	3.91	4.09	3.85	4.0	0.004	0.87	0.0	0.04	14.58	0.00	2.184	14.86	0.50	6.6	93.0	0.4	-1.72	0.50	0.78	1.63	4.0	0.003	0.68	0.0	0.04	17.34	0.00	2.115	16.02	2.24	7.0	93.0	0.0	1.05	1.01	0.51	0.81	0.96	3857	504	2	0	0	0	0	logfile
✔	8WX4	37900	2024-01-18	2023-10-27	3.12	3.35	3.11	3.4	0.004	0.71	0.0	0.04	14.16	0.00	1.335	4.66	1.53	3.5	96.5	0.0	-1.64	0.60	0.80	1.59	3.4	0.002	0.53	0.0	0.04	15.41	0.00	2.217	6.37	1.40	2.9	97.1	0.0	1.74	1.31	0.58	0.82	2.16	7512	976	6	0	0	0	0	logfile
✔	8WX3	37899	2024-01-18	2023-10-27	2.83	2.64	2.76	2.9	0.003	0.70	0.0	0.04	12.63	0.00	2.206	5.93	0.00	3.3	96.5	0.2	0.51	0.41	0.73	2.66	2.8	0.002	0.57	0.0	0.04	15.21	0.00	2.273	7.05	2.17	2.8	97.0	0.2	1.89	1.32	0.55	0.83	2.54	7498	974	2	0	0	0	0	logfile
✔	8QZC	18774	2024-01-19	2023-10-26	3.29	3.49	3.36	3.5	0.004	0.81	0.0	0.05	13.36	0.01	2.246	3.27	0.00	4.4	95.6	0.0	-1.37	0.72	0.78	2.47	3.6	0.003	0.61	0.0	0.04	15.12	0.00	2.124	7.46	2.00	4.5	95.5	0.0	0.41	0.75	0.74	0.82	1.85	11468	1402	4	0	4	0	0	logfile
✔	8UR7	42486	2024-01-17	2023-10-25	3.9	4.14	3.48	4.1	0.009	1.28	0.0	0.07	9.35	0.00	2.207	7.52	0.66	4.7	95.3	0.0	-0.32	0.73	0.74	2.83	4.1	0.003	0.64	0.0	0.04	13.48	0.00	2.343	6.77	2.87	2.8	97.2	0.0	0.37	1.59	0.77	0.79	2.45	5772	789	6	0	9	0	0	logfile
✔	8UR5	42482	2024-01-17	2023-10-25	3.7	3.90	2.45	4.0	0.011	1.45	0.0	0.09	9.30	0.01	2.510	6.45	1.71	4.3	95.2	0.4	-0.71	0.66	0.72	3.62	4.0	0.003	0.68	0.0	0.04	12.58	0.00	2.359	6.13	1.42	3.3	96.2	0.4	-0.12	1.63	0.68	0.78	3.59	4989	696	6	0	12	0	0	logfile
✔	8UoP	42435	2024-01-20	2023-10-20	3.8	3.97	3.89	3.8	0.005	0.91	0.0	0.04	16.45	0.01	1.954	17.97	0.73	15.7	83.6	0.7	-3.60	0.18	0.15	0.40	3.9	0.003	0.66	0.0	0.04	17.24	0.00	1.974	15.70	4.69	13.0	86.6	0.3	-3.07	0.94	0.24	0.24	0.12	13188	872	2	0	0	0	6544	logfile
✔	8UoY	42441	2024-01-20	2023-10-20	3.4	3.52	3.51	3.4	0.016	2.25	10.0	0.11	17.12	0.02	2.532	0.83	6.89	12.1	85.3	2.6	-3.89	0.21	0.24	0.07	3.5	0.004	0.78	0.0	0.04	17.88	0.01	1.876	19.95	4.11	12.1	87.7	0.2	-3.53	0.88	0.22	0.26	0.01	13188	872	2	0	0	0	6544	logfile
✔	8WTD	37832	2024-01-17	2023-10-18	3.06	3.33	3.05	3.4	0.005	0.90	7.0	0.05	18.48	0.00	2.232	8.87	0.72	5.3	93.9	0.8	-0.02	0.53	0.80	1.75	3.4	0.004	0.58	0.0	0.04	17.94	0.00	2.133	8.40	2.31	5.2	94.7	0.1	0.42	0.97	0.60	0.85	2.30	6456	790	3	0	4	0	0	logfile
✔	8WRL	37779	2024-01-17	2023-10-15	3.36	3.59	3.33	3.7	0.004	0.70	0.0	0.05	19.51	0.00	1.771	9.25	0.58	4.5	95.5	0.0	-0.27	0.54	0.77	1.66	3.7	0.003	0.51	0.0	0.04	17.32	0.00	2.222	8.85	4.18	3.7	96.3	0.0	0.43	0.34	0.52	0.77	1.34	6472	790	4	0	5	0	0	logfile
✔	8WRH	37776	2024-01-17	2023-10-14	3.08	3.33	3.08	3.4	0.004	0.68	1.0	0.05	18.70	0.00	2.151	9.11	0.00	4.8	94.8	0.4	0.28	0.61	0.83	2.27	3.4	0.003	0.52	0.0	0.04	17.71	0.00	2.098	7.68	1.30	5.0	95.0	0.0	0.95	0.88	0.59	0.82	1.94	6459	790	3	0	4	0	0	logfile
✔	8WRB	37771	2024-01-18	2023-10-13	2.91	3.14	3.03	3.2	0.002	0.49	0.0	0.04	9.42	0.00	2.218	4.00	1.06	1.3	98.7	0.0	1.02	0.57	0.80	3.66	3.2	0.003	0.51	0.0	0.04	13.39	0.00	2.063	6.52	3.27	1.7	98.3	0.0	1.85	1.16	0.57	0.81	2.90	8842	1135	6	0	2	0	0	logfile
✔	8WQR	37752	2024-01-18	2023-10-12	3.08	4.11	3.07	3.5	0.003	0.58	0.0	0.04	12.19	0.00	2.166	13.13	0.00	6.8	93.0	0.2	-2.46	0.81	0.66	1.89	3.5	0.004	0.69	0.0	0.05	14.11	0.00	2.144	15.84	2.60	8.4	91.4	0.1	-2.82	0.45	0.82	0.69	1.46	9681	1415	2	0	0	0	0	logfile
✔	8WPG	37716	2024-01-19	2023-10-10	2.7	2.92	—	3.0	0.004	0.60	0.0	0.04	16.88	0.00	2.163	9.08	0.08	4.2	95.8	0.0	-0.13	0.64	0.80	3.33	2.9	0.004	0.58	0.0	0.04	16.82	0.00	2.156	8.41	3.82	4.6	95.4	0.0	-0.08	0.27	0.65	0.81	3.25	12443	1608	10	0	21	0	0	logfile
✔	8QSM	18636	2024-01-17	2023-10-10	3.69	4.23	3.52	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	4.0	0.003	0.87	0.0	0.04	15.54	0.00	2.035	14.93	3.49	3.5	96.5	0.0	1.79	1.46	0.56	0.78	1.37	3579	464	1	0	0	0	0	logfile

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