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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8XCU | 38255 | 2024-01-17 | 2023-12-10 | 2.83 | 3.05 | 1.05 | 3.0 | 0.009 | 1.11 | 0.0 | 0.06 | 16.31 | 0.01 | 2.476 | 4.65 | 5.00 | 2.2 | 97.8 | 0.0 | 1.25 | 0.45 | 0.87 | 4.12 | 3.0 | 0.003 | 0.54 | 0.0 | 0.04 | 16.45 | 0.00 | 2.242 | 7.50 | 0.29 | 3.9 | 95.9 | 0.2 | 1.64 | 0.62 | 0.46 | 0.91 | 4.05 | 3370 | 417 | 2 | 0 | 3 | 20 | 0 | logfile |
✔ | 8XCX | 38258 | 2024-01-17 | 2023-12-10 | 2.83 | 3.04 | 1.04 | 3.0 | 0.008 | 0.84 | 0.0 | 0.05 | 16.53 | 0.01 | 2.405 | 6.53 | 2.96 | 2.9 | 97.1 | 0.0 | 1.08 | 0.44 | 0.88 | 4.21 | 3.0 | 0.003 | 0.49 | 0.0 | 0.04 | 16.75 | 0.00 | 2.260 | 6.37 | 1.18 | 2.7 | 97.3 | 0.0 | 1.68 | 1.13 | 0.41 | 0.89 | 3.60 | 3329 | 416 | 2 | 0 | 2 | 25 | 0 | logfile |
✔ | 8XD0 | 38261 | 2024-01-17 | 2023-12-10 | 2.83 | 3.06 | 1.35 | 3.0 | 0.009 | 1.13 | 0.0 | 0.07 | 16.46 | 0.01 | 2.449 | 4.66 | 2.35 | 3.1 | 96.9 | 0.0 | 1.32 | 0.46 | 0.88 | 3.52 | 3.0 | 0.004 | 0.54 | 0.0 | 0.04 | 17.71 | 0.00 | 2.198 | 5.71 | 2.35 | 2.9 | 96.9 | 0.2 | 1.84 | 0.36 | 0.46 | 0.91 | 3.35 | 3357 | 417 | 2 | 0 | 2 | 14 | 0 | logfile |
✔ | 8XCZ | 38260 | 2024-01-17 | 2023-12-10 | 2.83 | 3.03 | 1.04 | 3.0 | 0.007 | 0.74 | 0.0 | 0.05 | 17.16 | 0.01 | 2.428 | 5.92 | 3.85 | 3.6 | 96.4 | 0.0 | 1.41 | 0.43 | 0.88 | 4.78 | 3.0 | 0.004 | 0.51 | 0.0 | 0.04 | 17.29 | 0.00 | 2.214 | 5.16 | 1.78 | 2.7 | 97.3 | 0.0 | 1.62 | 0.35 | 0.43 | 0.91 | 3.87 | 3324 | 416 | 2 | 0 | 2 | 17 | 0 | logfile |
✔ | 8XD6 | 38267 | 2024-01-17 | 2023-12-10 | 2.79 | 2.93 | 1.04 | 2.9 | 0.009 | 1.12 | 0.0 | 0.06 | 16.23 | 0.01 | 2.369 | 7.03 | 3.51 | 3.4 | 96.6 | 0.0 | 0.89 | 0.48 | 0.90 | 4.52 | 2.9 | 0.015 | 1.12 | 1.0 | 0.04 | 16.59 | 0.01 | 0.945 | 8.37 | 1.46 | 1.7 | 98.3 | 0.0 | 1.45 | 0.41 | 0.48 | 0.93 | 4.61 | 3402 | 419 | 2 | 0 | 4 | 44 | 0 | logfile |
✔ | 8XCY | 38259 | 2024-01-17 | 2023-12-10 | 2.91 | 3.04 | 1.04 | 3.0 | 0.008 | 0.83 | 0.0 | 0.05 | 17.01 | 0.00 | 2.241 | 6.53 | 3.56 | 3.1 | 96.9 | 0.0 | 0.91 | 0.43 | 0.86 | 3.94 | 3.0 | 0.003 | 0.53 | 0.0 | 0.04 | 16.86 | 0.00 | 2.254 | 5.47 | 1.19 | 3.6 | 96.4 | 0.0 | 1.35 | 0.59 | 0.44 | 0.90 | 4.28 | 3311 | 416 | 2 | 0 | 2 | 8 | 0 | logfile |
✔ | 8XCQ | 38251 | 2024-01-17 | 2023-12-10 | 2.6 | 2.77 | — | 2.7 | 0.009 | 0.92 | 0.0 | 0.05 | 17.87 | 0.00 | 2.433 | 6.08 | 4.15 | 4.8 | 95.2 | 0.0 | 0.64 | 0.48 | 0.88 | 4.78 | 2.7 | 0.002 | 0.53 | 0.0 | 0.04 | 17.09 | 0.00 | 2.204 | 5.47 | 0.30 | 2.9 | 97.1 | 0.0 | 1.86 | 1.01 | 0.50 | 0.92 | 4.01 | 3312 | 416 | 2 | 0 | 3 | 6 | 0 | logfile |
✔ | 8XD1 | 38262 | 2024-01-17 | 2023-12-10 | 2.96 | 3.13 | 1.04 | 3.1 | 0.007 | 0.83 | 0.0 | 0.05 | 18.20 | 0.01 | 2.373 | 6.23 | 6.49 | 3.6 | 96.4 | 0.0 | 0.90 | 0.42 | 0.85 | 3.48 | 3.1 | 0.002 | 0.52 | 0.0 | 0.04 | 17.14 | 0.00 | 2.145 | 6.23 | 0.88 | 2.9 | 97.1 | 0.0 | 1.45 | 0.47 | 0.42 | 0.88 | 3.19 | 3307 | 416 | 2 | 0 | 1 | 9 | 0 | logfile |
✔ | 8XCT | 38254 | 2024-01-17 | 2023-12-10 | 2.87 | 3.06 | — | 3.0 | 0.009 | 1.09 | 0.0 | 0.06 | 16.21 | 0.01 | 2.278 | 4.37 | 5.00 | 2.2 | 97.8 | 0.0 | 1.25 | 0.45 | 0.88 | 4.06 | 3.0 | 0.004 | 0.54 | 0.0 | 0.04 | 16.84 | 0.00 | 2.175 | 5.27 | 1.76 | 3.6 | 96.1 | 0.2 | 1.37 | 1.56 | 0.43 | 0.89 | 4.05 | 3358 | 417 | 2 | 0 | 1 | 28 | 0 | logfile |
✔ | 8XCW | 38257 | 2024-01-17 | 2023-12-10 | 2.87 | 3.04 | 1.36 | 3.0 | 0.009 | 1.10 | 0.0 | 0.06 | 16.21 | 0.01 | 2.363 | 4.68 | 3.54 | 2.2 | 97.8 | 0.0 | 1.28 | 0.49 | 0.89 | 4.44 | 3.0 | 0.004 | 0.51 | 0.0 | 0.04 | 16.81 | 0.00 | 2.215 | 6.94 | 2.95 | 2.4 | 97.6 | 0.0 | 2.00 | 0.42 | 0.49 | 0.92 | 3.47 | 3347 | 416 | 2 | 0 | 2 | 17 | 0 | logfile |
✔ | 8XCR | 38252 | 2024-01-17 | 2023-12-10 | 2.6 | 2.74 | — | 2.7 | 0.006 | 0.77 | 0.0 | 0.05 | 18.07 | 0.00 | 2.405 | 8.56 | 6.45 | 3.6 | 96.4 | 0.0 | 0.58 | 0.46 | 0.89 | 4.47 | 2.7 | 0.004 | 0.56 | 0.0 | 0.04 | 16.21 | 0.00 | 2.256 | 4.21 | 0.88 | 1.7 | 98.3 | 0.0 | 1.49 | 1.16 | 0.49 | 0.93 | 5.30 | 3360 | 418 | 2 | 0 | 2 | 21 | 0 | logfile |
✔ | 8XD4 | 38265 | 2024-01-17 | 2023-12-10 | 2.87 | 3.04 | — | 3.0 | 0.007 | 0.82 | 0.0 | 0.05 | 17.18 | 0.00 | 2.325 | 5.57 | 3.81 | 3.4 | 96.6 | 0.0 | 1.29 | 0.44 | 0.86 | 4.02 | 3.0 | 0.002 | 0.50 | 0.0 | 0.04 | 17.47 | 0.00 | 2.319 | 6.33 | 0.59 | 2.6 | 97.1 | 0.2 | 2.03 | 1.63 | 0.43 | 0.89 | 3.89 | 3342 | 418 | 2 | 0 | 2 | 11 | 0 | logfile |
✔ | 8XCV | 38256 | 2024-01-17 | 2023-12-10 | 2.83 | 3.05 | — | 3.0 | 0.007 | 0.80 | 0.0 | 0.05 | 16.46 | 0.01 | 2.441 | 4.86 | 2.95 | 1.5 | 98.5 | 0.0 | 1.22 | 0.48 | 0.89 | 4.82 | 3.0 | 0.002 | 0.49 | 0.0 | 0.04 | 15.99 | 0.00 | 2.314 | 5.62 | 0.29 | 1.9 | 98.1 | 0.0 | 2.11 | 0.38 | 0.48 | 0.91 | 4.34 | 3310 | 415 | 2 | 0 | 1 | 7 | 0 | logfile |
✔ | 8XD3 | 38264 | 2024-01-17 | 2023-12-10 | 2.87 | 3.06 | 1.34 | 3.0 | 0.007 | 0.82 | 0.0 | 0.05 | 17.44 | 0.00 | 2.325 | 5.57 | 3.81 | 3.4 | 96.6 | 0.0 | 1.29 | 0.48 | 0.88 | 3.57 | 3.0 | 0.004 | 0.55 | 0.0 | 0.04 | 17.41 | 0.00 | 2.185 | 6.48 | 2.05 | 2.9 | 96.9 | 0.2 | 1.48 | 0.44 | 0.46 | 0.90 | 3.34 | 3342 | 418 | 2 | 0 | 2 | 11 | 0 | logfile |
✔ | 8XCo | 38249 | 2024-01-17 | 2023-12-10 | 2.64 | 2.79 | — | 2.8 | 0.009 | 1.13 | 0.0 | 0.06 | 17.49 | 0.01 | 2.424 | 6.49 | 6.78 | 2.4 | 97.6 | 0.0 | 0.92 | 0.48 | 0.88 | 4.70 | 2.7 | 0.004 | 0.52 | 0.0 | 0.04 | 17.32 | 0.00 | 2.279 | 5.13 | 0.59 | 2.2 | 97.8 | 0.0 | 1.76 | 0.57 | 0.50 | 0.93 | 4.53 | 3335 | 416 | 2 | 0 | 1 | 14 | 0 | logfile |
✔ | 8XD2 | 38263 | 2024-01-17 | 2023-12-10 | 2.64 | 3.04 | — | 3.0 | 0.009 | 0.88 | 0.0 | 0.05 | 17.62 | 0.00 | 2.449 | 4.72 | 3.56 | 3.9 | 96.1 | 0.0 | 0.83 | 0.45 | 0.88 | 4.08 | 3.0 | 0.004 | 0.57 | 0.0 | 0.04 | 17.04 | 0.00 | 2.273 | 5.33 | 0.89 | 2.7 | 97.3 | 0.0 | 1.85 | 0.55 | 0.43 | 0.89 | 3.77 | 3305 | 416 | 2 | 0 | 2 | 9 | 0 | logfile |
✔ | 8XCS | 38253 | 2024-01-17 | 2023-12-10 | 2.63 | 2.77 | 1.03 | 2.7 | 0.009 | 1.10 | 0.0 | 0.06 | 16.41 | 0.01 | 2.381 | 7.66 | 4.69 | 3.8 | 96.2 | 0.0 | 0.58 | 0.47 | 0.89 | 4.80 | 2.7 | 0.004 | 0.55 | 0.0 | 0.04 | 16.47 | 0.00 | 2.262 | 4.36 | 1.17 | 2.2 | 97.8 | 0.0 | 1.28 | 0.88 | 0.50 | 0.93 | 5.61 | 3360 | 418 | 2 | 0 | 3 | 20 | 0 | logfile |
✔ | 8XCP | 38250 | 2024-01-17 | 2023-12-10 | 2.64 | 2.78 | — | 2.7 | 0.008 | 0.86 | 0.0 | 0.05 | 16.89 | 0.01 | 2.405 | 7.46 | 2.97 | 3.9 | 96.1 | 0.0 | 0.56 | 0.44 | 0.87 | 4.04 | 2.7 | 0.004 | 0.60 | 0.0 | 0.04 | 16.80 | 0.00 | 2.347 | 5.02 | 0.30 | 3.4 | 96.6 | 0.0 | 1.53 | 0.67 | 0.46 | 0.92 | 3.76 | 3309 | 415 | 2 | 0 | 2 | 13 | 0 | logfile |
✔ | 8XD5 | 38266 | 2024-01-17 | 2023-12-10 | 2.75 | 2.93 | 1.08 | 2.9 | 0.005 | 0.73 | 0.0 | 0.05 | 16.88 | 0.00 | 2.447 | 6.29 | 3.80 | 3.4 | 96.6 | 0.0 | 0.89 | 0.49 | 0.90 | 5.03 | 2.8 | 0.003 | 0.50 | 0.0 | 0.04 | 16.49 | 0.00 | 2.242 | 5.09 | 0.88 | 1.7 | 98.3 | 0.0 | 1.68 | 1.00 | 0.48 | 0.93 | 4.85 | 3378 | 419 | 2 | 0 | 2 | 31 | 0 | logfile |
✔ | 8XBi | 38219 | 2024-01-17 | 2023-12-06 | 3.06 | 2.87 | 3.01 | 3.0 | 0.013 | 1.26 | 0.0 | 0.07 | 13.63 | 0.01 | 2.221 | 7.35 | 0.00 | 1.7 | 98.3 | 0.0 | 1.92 | 0.37 | 0.67 | 0.71 | 3.0 | 0.002 | 0.51 | 0.0 | 0.04 | 16.58 | 0.00 | 2.210 | 9.13 | 2.18 | 2.0 | 98.0 | 0.0 | 2.23 | 0.43 | 0.48 | 0.72 | 0.93 | 2467 | 298 | 2 | 0 | 1 | 0 | 0 | logfile |