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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7JVA | 22497 | 2024-01-17 | 2020-08-20 | 3.6 | 3.93 | 3.68 | 3.9 | 0.016 | 1.51 | 0.0 | 0.09 | 13.10 | 0.01 | 2.398 | 0.80 | 0.30 | 1.0 | 98.8 | 0.2 | 0.87 | 0.84 | 0.81 | 3.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3248 | 420 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 6ZZU | 11587 | 2024-01-19 | 2020-08-05 | 3.5 | 2.41 | 3.59 | 3.1 | 0.005 | 0.96 | 0.0 | 0.05 | 16.19 | 0.01 | 2.125 | 10.37 | 0.17 | 4.9 | 95.1 | 0.0 | -4.89 | 0.79 | 0.78 | 3.19 | 3.0 | 0.004 | 0.86 | 0.0 | 0.04 | 17.58 | 0.00 | 2.109 | 27.09 | 3.56 | 5.8 | 94.2 | 0.0 | -0.99 | 1.26 | 0.80 | 0.78 | 1.94 | 10760 | 1340 | 12 | 0 | 4 | 4 | 0 | logfile |
✔ | 6ZQi | 11364 | 2024-01-17 | 2020-07-09 | 3.8 | 4.13 | 3.63 | 4.1 | 0.002 | 0.56 | 0.0 | 0.04 | 12.44 | 0.00 | 2.336 | 6.03 | 1.12 | 3.1 | 96.9 | 0.0 | -2.14 | 0.67 | 0.78 | 0.85 | 4.1 | 0.005 | 0.83 | 0.0 | 0.05 | 15.84 | 0.00 | 2.186 | 12.87 | 5.03 | 6.2 | 93.8 | 0.0 | -0.79 | 0.65 | 0.69 | 0.81 | 1.24 | 5032 | 655 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 6XQo | 22291 | 2024-01-17 | 2020-07-09 | 3.1 | 3.54 | — | 3.5 | 0.004 | 0.57 | 0.0 | 0.04 | 15.61 | 0.00 | 1.956 | 9.56 | 3.52 | 4.4 | 95.6 | 0.0 | -2.83 | 0.76 | 0.75 | 2.70 | 3.5 | 0.004 | 0.62 | 0.0 | 0.04 | 16.90 | 0.00 | 2.152 | 11.98 | 7.04 | 2.7 | 97.3 | 0.0 | 0.53 | 0.64 | 0.78 | 0.78 | 1.48 | 4301 | 560 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6XJH | 22210 | 2024-01-18 | 2020-06-23 | 3.6 | 2.83 | — | 3.6 | 0.019 | 1.64 | 0.0 | 0.09 | 11.43 | 0.01 | 2.173 | 3.03 | 0.48 | 1.5 | 98.5 | 0.0 | 1.10 | 0.66 | 0.74 | 1.98 | 3.7 | 0.003 | 0.66 | 0.0 | 0.04 | 16.71 | 0.00 | 1.993 | 12.89 | 2.85 | 2.4 | 97.6 | 0.0 | 0.83 | 1.62 | 0.68 | 0.76 | 1.70 | 7596 | 940 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 6UJC | 20796 | 2024-01-18 | 2019-10-02 | 3.56 | 3.89 | — | 3.9 | 0.014 | 1.40 | 0.0 | 0.09 | 11.47 | 0.01 | 1.792 | 0.44 | 0.11 | 3.0 | 97.0 | 0.0 | 0.47 | 0.72 | 0.75 | 2.35 | 3.9 | 0.003 | 0.65 | 0.0 | 0.04 | 13.26 | 0.00 | 1.953 | 8.01 | 2.36 | 4.9 | 95.1 | 0.0 | -0.17 | 0.75 | 0.74 | 0.79 | 2.21 | 9209 | 1184 | 11 | 0 | 23 | 0 | 0 | logfile |
✔ | 6oWT | 20217 | 2024-01-19 | 2019-05-10 | 3.8 | 4.08 | — | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 12.40 | 0.01 | 2.304 | 4.41 | 2.31 | 4.4 | 95.6 | 0.0 | -3.98 | 0.77 | 0.76 | 1.52 | 4.0 | 0.003 | 0.64 | 0.0 | 0.04 | 15.29 | 0.00 | 2.193 | 11.91 | 3.02 | 4.4 | 95.6 | 0.0 | 0.38 | 0.65 | 0.78 | 0.77 | 1.07 | 11649 | 1575 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oUC | 20202 | 2024-01-17 | 2019-05-04 | 2.8 | 3.00 | — | 3.0 | 0.008 | 1.15 | 1.0 | 0.08 | 9.03 | 0.01 | 2.131 | 6.96 | 0.00 | 3.5 | 96.5 | 0.0 | -2.32 | 0.62 | 0.88 | 5.44 | 3.0 | 0.003 | 0.57 | 0.0 | 0.05 | 14.25 | 0.01 | 2.212 | 3.88 | 2.40 | 2.9 | 97.1 | 0.0 | -0.35 | 1.17 | 0.65 | 0.90 | 3.86 | 3899 | 483 | 1 | 0 | 1 | 124 | 0 | logfile |
✔ | 6R23 | 4708 | 2024-01-17 | 2019-03-15 | 4.9 | 4.57 | — | 4.6 | 0.006 | 1.07 | 0.0 | 0.05 | 16.56 | 0.01 | 2.332 | 7.52 | 0.00 | 7.9 | 92.1 | 0.0 | -4.61 | 0.60 | 0.75 | — | 4.6 | 0.003 | 0.65 | 0.0 | 0.03 | 16.46 | 0.00 | 2.358 | 8.83 | 0.00 | 6.7 | 93.3 | 0.0 | 0.64 | 3.59 | 0.60 | 0.73 | — | 1518 | 182 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6i2i | 0331 | 2024-01-17 | 2018-11-01 | 3.6 | 3.72 | — | 3.7 | 0.009 | 1.17 | 0.0 | 0.06 | 16.64 | 0.01 | 2.019 | 7.46 | 0.28 | 7.1 | 92.9 | 0.0 | -5.22 | 0.74 | 0.74 | 2.16 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 15.52 | 0.00 | 1.932 | 12.16 | 2.90 | 3.6 | 96.4 | 0.0 | -1.95 | 0.82 | 0.75 | 0.75 | 1.50 | 6830 | 856 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 5LiJ | 4054 | 2024-01-17 | 2016-07-14 | 4.2 | 3.63 | — | 4.2 | 0.009 | 2.92 | 4.0 | 0.17 | 15.82 | 0.01 | 2.249 | 25.64 | 0.00 | 10.7 | 89.3 | 0.0 | -6.36 | 0.85 | 0.76 | — | 3.8 | 0.005 | 1.17 | 0.0 | 0.04 | 10.44 | 0.00 | 2.149 | 15.78 | 0.00 | 35.3 | 64.7 | 0.0 | -5.53 | 1.48 | 0.86 | 0.78 | — | 761 | 152 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 5Lii | 4053 | 2024-01-17 | 2016-07-14 | 3.8 | 2.99 | — | 3.9 | 0.015 | 2.41 | 6.0 | 0.14 | 12.69 | 0.01 | 1.855 | 42.83 | 1.41 | 16.9 | 81.9 | 1.2 | -6.10 | 0.55 | 0.70 | 3.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3098 | 433 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9E | 6240 | 2024-01-17 | 2015-01-10 | 3.3 | 2.66 | — | 3.3 | 0.032 | 3.28 | 0.0 | 0.09 | 21.31 | 0.02 | 1.223 | 20.81 | 24.26 | 9.8 | 87.3 | 2.9 | -3.41 | 0.77 | 0.88 | 3.26 | 3.3 | 0.004 | 0.77 | 0.0 | 0.04 | 17.77 | 0.00 | 2.236 | 10.82 | 4.58 | 7.8 | 91.7 | 0.6 | 0.72 | 1.59 | 0.73 | 0.86 | 3.06 | 4098 | 520 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9D | 6239 | 2024-01-17 | 2015-01-09 | 3.3 | 2.70 | — | 3.4 | 0.027 | 2.04 | 0.0 | 0.08 | 20.57 | 0.01 | 2.034 | 23.66 | 24.92 | 8.2 | 89.6 | 2.2 | -3.64 | 0.81 | 0.89 | 2.90 | 3.3 | 0.022 | 0.82 | 0.0 | 0.04 | 17.81 | 0.00 | 2.186 | 15.94 | 5.11 | 6.7 | 92.7 | 0.5 | -1.39 | 2.36 | 0.75 | 0.84 | 2.66 | 6086 | 746 | 1 | 0 | 1 | 0 | 0 | logfile |