Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZP9	60330	2025-01-23	2024-05-29	2.8	2.19	2.89	2.0	0.003	0.63	0.0	0.04	20.46	0.00	2.098	10.91	2.60	6.0	93.8	0.1	0.25	0.78	0.78	2.93	1.9	0.005	0.69	0.0	0.04	20.34	0.00	2.313	9.33	4.00	6.2	93.8	0.1	-0.07	0.48	0.80	0.81	2.88	19297	2317	9	74	0	0	0	logfile
✔	8ZoY	60322	2025-01-17	2024-05-29	2.5	2.76	2.53	2.8	0.007	0.65	0.0	0.04	15.32	0.01	1.956	6.93	1.07	2.0	98.0	0.0	0.87	0.62	0.81	4.94	2.8	0.004	0.54	0.0	0.04	15.19	0.00	2.374	3.84	0.71	2.3	97.7	0.0	1.58	0.41	0.61	0.81	4.59	10701	666	4	0	3	70	5260	logfile
✔	8ZoL	60297	2025-01-23	2024-05-28	2.55	2.26	2.64	1.8	0.005	0.71	0.0	0.05	19.60	0.00	1.968	10.10	1.64	8.3	91.2	0.5	-0.67	0.72	0.67	1.91	2.0	0.004	0.68	0.0	0.04	19.54	0.00	2.435	8.51	3.13	7.5	92.3	0.2	-0.50	0.51	0.75	0.72	1.94	19451	2377	9	59	0	0	0	logfile
✔	8ZNR	60279	2025-01-24	2024-05-28	2.9	2.29	2.94	2.0	0.007	1.17	0.0	0.07	18.22	0.01	2.197	6.59	1.40	6.6	93.0	0.4	-3.03	0.80	0.82	3.32	2.0	0.005	0.68	0.0	0.04	19.10	0.00	2.375	7.89	2.84	5.0	94.9	0.1	-0.72	0.96	0.81	0.83	3.11	22605	2607	11	91	0	0	0	logfile
✔	9FHB	50444	2025-01-14	2024-05-27	3.87	4.06	3.87	4.0	0.005	0.96	0.0	0.05	15.86	0.01	2.140	16.76	3.25	4.1	95.1	0.8	-0.41	0.70	0.77	1.38	4.0	0.003	0.70	0.0	0.04	16.65	0.00	2.079	8.61	3.53	4.1	95.8	0.1	1.02	1.18	0.71	0.79	0.90	6751	862	8	0	7	0	0	logfile
✔	8ZNE	60269	2025-01-13	2024-05-26	2.64	2.76	2.44	2.7	0.005	0.78	0.0	0.05	16.82	0.01	2.472	6.22	2.65	3.1	96.9	0.0	0.47	0.53	0.87	4.39	2.7	0.002	0.53	0.0	0.04	17.95	0.00	2.487	5.16	1.76	3.4	96.6	0.0	1.20	1.31	0.49	0.90	4.26	3312	417	2	0	1	9	0	logfile
✔	8ZND	60268	2025-01-13	2024-05-26	2.53	2.67	1.34	2.6	0.007	0.93	0.0	0.05	15.60	0.01	2.392	3.48	0.88	1.7	98.3	0.0	0.95	0.58	0.90	4.78	2.6	0.002	0.50	0.0	0.04	16.84	0.00	2.439	3.79	0.88	1.7	98.3	0.0	1.50	0.83	0.53	0.92	4.22	3334	416	2	0	1	24	0	logfile
✔	8ZNB	60266	2025-01-13	2024-05-26	2.53	2.68	2.16	2.7	0.007	0.95	0.0	0.05	15.55	0.00	2.421	7.24	2.06	1.2	98.8	0.0	0.61	0.55	0.89	4.44	2.7	0.002	0.58	0.0	0.04	17.27	0.00	2.443	6.19	1.18	1.0	99.0	0.0	1.03	0.90	0.51	0.91	3.98	3342	416	2	0	1	21	0	logfile
✔	8ZNG	60270	2025-01-13	2024-05-26	2.5	2.65	1.33	2.6	0.007	0.92	0.0	0.05	19.32	0.01	2.439	3.91	3.24	2.9	97.1	0.0	1.28	0.60	0.89	4.31	2.6	0.003	0.54	0.0	0.04	17.94	0.00	2.490	4.82	2.35	2.2	97.8	0.0	1.13	0.82	0.55	0.92	4.27	3347	416	2	0	2	16	0	logfile
✔	8ZNC	60267	2025-01-13	2024-05-26	2.41	2.55	1.33	2.5	0.007	0.97	0.0	0.05	19.34	0.01	2.408	6.47	1.76	2.4	97.6	0.0	0.66	0.53	0.90	3.96	2.5	0.003	0.54	0.0	0.04	19.21	0.00	2.452	5.27	1.18	1.7	98.3	0.0	1.33	1.17	0.49	0.90	4.15	3356	416	2	0	3	24	0	logfile
✔	9C0C	45079	2025-01-16	2024-05-25	3.41	3.58	3.44	3.5	0.003	0.58	0.0	0.04	14.86	0.00	2.206	8.91	0.58	2.1	97.9	0.0	1.80	0.69	0.73	1.56	3.5	0.003	0.53	0.0	0.04	16.02	0.00	2.514	6.65	2.32	1.4	98.6	0.0	1.94	1.25	0.83	0.87	1.59	53970	7336	14	0	0	0	0	logfile
✔	9C0J	45086	2025-01-14	2024-05-25	3.17	2.92	3.11	3.2	0.005	1.02	0.0	0.05	22.01	0.01	2.099	0.65	0.80	1.2	98.8	0.0	-0.50	0.69	0.87	5.25	3.2	0.004	0.63	0.0	0.04	22.01	0.00	1.976	3.00	2.68	1.9	98.1	0.0	0.97	0.37	0.70	0.89	4.70	7010	425	5	164	3	0	0	logfile
✔	9FGU	50428	2025-01-13	2024-05-25	4.3	4.49	4.25	4.3	0.003	0.72	0.0	0.05	13.96	0.00	2.123	19.81	0.29	4.9	95.1	0.0	-1.32	0.75	0.70	—	4.3	0.003	0.74	0.0	0.05	13.56	0.00	2.535	13.52	0.00	6.1	93.9	0.0	-1.56	1.04	0.76	0.71	—	3241	413	3	0	1	0	0	logfile
✔	9C0D	45080	2025-01-17	2024-05-25	3.97	4.23	4.01	4.0	0.003	0.56	0.0	0.04	13.21	0.00	2.222	10.41	0.08	3.3	96.5	0.2	1.73	0.82	0.75	0.31	4.0	0.005	0.75	4.0	0.04	14.73	0.00	2.404	8.63	1.31	4.0	96.0	0.0	1.40	1.25	0.84	0.84	0.26	54530	7336	14	0	0	0	0	logfile
✔	9FGT	50424	2025-01-13	2024-05-25	3.8	4.00	3.78	4.0	0.005	0.70	0.0	0.05	14.86	0.00	2.094	7.67	0.00	7.8	92.2	0.0	-1.56	0.72	0.81	2.12	3.9	0.004	0.67	0.0	0.05	15.43	0.00	2.459	6.10	1.93	6.9	93.1	0.0	-1.65	0.43	0.72	0.80	2.01	2921	373	3	0	1	0	0	logfile
✔	9FGS	50420	2025-01-13	2024-05-25	4.0	4.27	4.01	4.2	0.003	0.66	0.0	0.04	13.38	0.00	2.251	10.57	0.00	8.7	91.3	0.0	-1.99	0.78	0.80	—	4.2	0.003	0.66	0.0	0.04	15.42	0.00	2.413	9.77	3.51	8.7	91.1	0.2	-1.76	0.98	0.78	0.81	—	3187	412	3	0	1	0	0	logfile
✔	9FGR	50418	2025-01-13	2024-05-25	4.0	4.21	3.96	4.1	0.003	0.58	0.0	0.04	12.55	0.00	2.176	8.75	0.00	6.4	93.6	0.0	-1.53	0.76	0.82	—	4.1	0.003	0.65	0.0	0.04	14.72	0.00	2.582	7.48	2.90	6.4	93.6	0.0	-1.27	1.00	0.77	0.82	—	3209	412	3	0	1	1	0	logfile
✘	9C0i	45085	2025-01-14	2024-05-25	2.91	2.56	2.89	2.8	0.006	1.03	0.0	0.06	21.52	0.01	2.090	1.50	0.80	1.4	98.6	0.0	-0.39	0.67	0.89	5.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7676	425	5	197	2	0	0	logfile
✔	9BZ8	45056	2025-01-22	2024-05-24	3.0	3.43	2.93	3.3	0.002	0.51	0.0	0.04	16.19	0.00	2.029	7.04	2.73	2.2	97.8	0.0	2.18	0.77	0.85	2.21	3.3	0.004	0.70	0.0	0.04	17.09	0.00	2.582	6.12	3.75	1.6	98.4	0.0	2.15	0.59	0.73	0.84	2.42	18277	2254	7	0	0	0	0	logfile
✔	9BZ0	45050	2025-01-16	2024-05-24	1.9	2.09	—	1.5	0.009	0.98	0.0	0.07	14.54	0.01	1.902	2.82	0.29	3.6	96.4	0.0	-0.82	0.71	0.67	3.22	1.5	0.003	0.64	0.0	0.04	17.59	0.00	1.927	5.86	1.70	2.4	97.6	0.0	0.60	1.31	0.81	0.81	3.33	54687	6636	32	94	12	2	0	logfile

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