Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZC1	39919	2025-01-14	2024-04-28	4.17	4.43	4.20	4.3	0.003	0.75	0.0	0.05	13.38	0.01	2.313	5.92	0.00	4.3	95.7	0.0	-1.66	0.73	0.72	—	4.3	0.003	0.70	0.0	0.05	13.50	0.01	2.485	10.28	0.00	6.2	93.8	0.0	-1.68	0.62	0.75	0.74	—	4570	597	3	0	0	0	0	logfile
✔	8ZC5	39923	2025-01-14	2024-04-28	3.91	4.07	3.86	4.0	0.004	0.76	0.0	0.05	13.55	0.01	2.258	4.88	0.00	4.4	95.6	0.0	-1.55	0.74	0.78	2.73	4.0	0.004	0.67	0.0	0.05	15.17	0.00	2.542	8.74	1.42	4.9	95.1	0.0	-1.24	1.46	0.76	0.80	2.40	6515	830	8	0	2	0	0	logfile
✔	8ZBQ	39907	2025-01-14	2024-04-27	3.03	3.22	3.02	3.2	0.006	0.92	2.0	0.05	16.51	0.01	2.261	24.87	6.41	9.8	90.2	0.0	-2.05	0.66	0.78	2.44	3.2	0.004	0.63	0.0	0.04	16.86	0.00	2.455	12.76	4.37	7.4	92.6	0.0	-0.88	1.27	0.66	0.81	2.39	6346	779	2	0	0	0	0	logfile
✔	9F45	50184	2025-01-18	2024-04-26	3.74	4.61	—	3.8	0.003	0.50	0.0	0.04	11.49	0.00	2.145	8.38	2.01	2.6	97.3	0.1	2.22	0.90	0.81	0.74	3.8	0.003	0.67	0.0	0.04	13.73	0.00	2.309	11.49	1.38	2.9	97.1	0.0	1.67	1.50	0.91	0.83	0.81	56848	7140	10	0	2	0	0	logfile
✔	9F43	50182	2025-01-15	2024-04-26	3.49	3.69	3.45	3.7	0.002	0.49	0.0	0.04	14.27	0.00	2.074	5.62	0.21	2.3	97.7	0.0	1.09	0.63	0.77	1.19	3.7	0.004	0.61	0.0	0.04	15.70	0.00	2.565	7.63	2.88	4.4	95.5	0.1	0.54	0.57	0.66	0.80	1.41	8465	1061	2	0	0	0	0	logfile
✔	9F44	50183	2025-01-18	2024-04-26	3.68	4.36	3.71	3.9	0.003	0.51	0.0	0.04	13.42	0.00	2.161	7.02	1.65	2.7	97.3	0.0	2.01	0.90	0.80	0.86	4.0	0.003	0.67	0.0	0.04	14.79	0.00	2.458	10.68	1.41	2.7	97.2	0.1	1.54	0.60	0.90	0.81	1.04	56848	7140	10	0	2	0	0	logfile
✔	8ZB9	39898	2025-01-14	2024-04-26	3.31	3.44	3.32	3.5	0.007	0.87	0.0	0.05	16.83	0.01	2.267	16.36	0.37	14.2	85.8	0.0	-3.11	0.73	0.86	3.12	3.5	0.003	0.62	0.0	0.04	17.50	0.00	2.516	6.92	5.16	9.1	90.9	0.0	-2.07	0.43	0.72	0.85	3.07	4904	622	2	0	0	0	0	logfile
✔	9F42	50181	2025-01-15	2024-04-26	3.27	3.49	3.23	3.5	0.002	0.48	0.0	0.04	12.23	0.00	2.189	6.92	1.81	3.0	97.0	0.0	0.35	0.59	0.74	2.02	3.5	0.006	0.69	0.0	0.05	15.32	0.01	2.578	11.29	3.74	5.5	94.5	0.0	-0.33	1.42	0.60	0.77	2.51	8465	1061	2	0	0	0	0	logfile
✔	8ZBE	39901	2025-01-14	2024-04-26	3.24	3.44	3.22	3.4	0.005	0.90	0.0	0.05	15.39	0.00	2.276	11.65	0.00	6.2	93.8	0.0	-2.05	0.60	0.66	0.71	3.4	0.004	0.66	0.0	0.04	16.30	0.00	2.491	9.33	6.62	5.9	94.1	0.0	-1.09	0.45	0.61	0.68	1.04	7489	1113	7	0	1	0	0	logfile
✔	8ZBA	39899	2025-01-16	2024-04-26	3.57	3.81	3.60	3.8	0.003	0.59	0.0	0.04	13.82	0.00	2.234	8.37	0.00	10.7	89.3	0.0	-2.46	0.70	0.76	2.09	3.8	0.005	0.71	0.0	0.05	16.50	0.00	2.456	9.40	2.81	12.1	87.8	0.1	-2.60	2.03	0.72	0.79	1.77	9973	1267	4	0	0	0	0	logfile
✔	9F3F	50173	2025-01-14	2024-04-25	2.4	2.90	2.38	2.7	0.008	1.18	1.0	0.07	16.34	0.01	2.180	16.32	2.45	4.3	95.7	0.0	-0.13	0.84	0.84	3.55	2.6	0.003	0.63	0.0	0.04	17.69	0.00	2.541	8.29	3.19	3.3	96.7	0.0	1.48	0.57	0.83	0.86	3.23	7496	939	4	1	0	0	0	logfile
✘	8ZAo	39882	2025-01-14	2024-04-25	2.6	3.07	2.73	3.0	0.003	0.57	0.0	0.04	15.64	0.01	1.601	7.52	1.64	1.2	98.8	0.0	1.98	0.53	0.85	5.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6432	777	9	0	18	30	0	logfile
✘	8ZAP	39883	2025-01-14	2024-04-25	2.6	2.77	2.58	2.8	0.003	0.60	0.0	0.04	16.03	0.01	1.487	8.32	4.19	2.6	97.4	0.0	1.24	0.71	0.89	4.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6442	776	9	0	27	36	0	logfile
✘	8ZAQ	39884	2025-01-14	2024-04-25	2.6	2.80	2.62	2.8	0.003	0.59	0.0	0.04	16.95	0.01	1.092	8.94	2.39	2.6	97.4	0.0	1.48	0.69	0.89	4.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6449	776	9	0	27	36	0	logfile
✘	8ZAM	39880	2025-01-13	2024-04-25	2.5	2.87	2.53	2.8	0.007	0.87	0.0	0.04	22.82	0.01	2.265	9.50	2.46	5.3	94.7	0.0	1.70	0.60	0.88	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4000	492	4	0	2	0	0	logfile
✘	8ZAN	39881	2025-01-13	2024-04-25	2.4	2.80	2.50	2.7	0.003	0.65	0.0	0.04	17.05	0.01	2.309	9.70	2.96	5.3	93.4	1.2	1.81	0.65	0.89	4.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3938	492	4	0	2	0	0	logfile
✔	9BiT	44601	2025-01-16	2024-04-24	3.1	3.27	3.05	3.2	0.003	0.60	0.0	0.04	18.48	0.01	2.073	6.13	1.60	6.8	93.2	0.0	-0.05	0.60	0.83	2.75	3.2	0.002	0.54	0.0	0.04	18.29	0.00	2.262	4.44	2.20	5.8	94.2	0.0	0.73	0.33	0.63	0.85	2.71	9448	595	3	0	1	0	4734	logfile
✔	9BiU	44602	2025-01-16	2024-04-24	2.9	3.33	2.90	3.2	0.003	0.56	0.0	0.04	17.10	0.00	2.204	4.85	2.00	7.0	93.0	0.0	0.77	0.63	0.84	2.63	3.2	0.003	0.59	0.0	0.04	17.12	0.00	2.239	5.49	1.80	6.6	93.4	0.0	0.80	0.33	0.62	0.84	2.50	9458	595	3	0	1	0	4738	logfile
✔	8Z9Z	39873	2025-01-18	2024-04-24	3.5	3.90	3.63	3.8	0.002	0.48	0.0	0.04	18.14	0.00	2.209	9.03	0.29	2.5	97.5	0.0	3.18	0.61	0.77	1.29	3.8	0.003	0.50	0.0	0.04	18.33	0.00	2.443	7.85	3.19	2.4	97.6	0.0	3.28	0.30	0.61	0.79	1.47	12648	1519	8	0	6	0	0	logfile
✔	9BiS	44600	2025-01-16	2024-04-24	3.2	3.55	3.16	3.4	0.004	0.78	0.0	0.04	18.67	0.00	1.376	7.08	0.40	8.7	91.3	0.0	0.07	0.59	0.82	2.90	3.4	0.003	0.56	0.0	0.04	18.21	0.00	2.292	5.18	1.80	7.0	93.0	0.0	0.89	0.79	0.61	0.84	3.06	9444	595	3	0	1	0	4734	logfile

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