Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FWK	29511	2023-02-19	2023-01-22	3.5	4.25	3.71	4.0	0.005	1.07	2.0	0.06	12.40	0.01	2.289	13.87	1.29	11.6	87.2	1.2	-4.60	0.66	0.72	0.53	4.0	0.003	0.74	0.0	0.04	15.19	0.00	2.133	11.92	0.20	11.7	88.1	0.3	-0.86	2.37	0.68	0.77	0.78	9462	1194	2	0	0	0	0	logfile
✔	8HW1	35080	2023-02-26	2022-12-28	3.13	3.07	2.93	3.2	0.028	2.49	0.0	0.29	22.01	0.03	2.137	14.51	6.74	11.3	88.7	0.0	-2.57	0.68	0.85	3.07	3.2	0.003	0.90	0.0	0.05	19.99	0.00	2.173	7.18	0.05	9.4	90.6	0.0	-0.34	0.45	0.66	0.86	3.07	29271	2651	22	0	143	0	0	logfile
✔	8FiS	29209	2023-02-23	2022-12-16	3.18	3.36	3.47	3.5	0.004	0.62	1.0	0.05	14.61	0.00	2.110	3.15	0.25	5.5	94.5	0.0	-0.93	0.80	0.80	2.46	3.5	0.003	0.58	0.0	0.04	15.32	0.00	2.064	6.83	0.20	5.3	94.6	0.0	-0.27	0.61	0.80	0.84	2.16	20356	2357	57	0	142	0	0	logfile
✔	8BYP	16330	2023-02-23	2022-12-15	3.12	3.39	3.21	3.3	0.004	0.64	0.0	0.05	14.53	0.00	2.198	9.73	0.40	6.2	93.8	0.0	-1.08	0.68	0.79	3.25	3.3	0.003	0.56	0.0	0.04	16.11	0.00	2.146	10.67	0.13	5.7	94.3	0.0	-0.46	1.11	0.70	0.82	2.95	19836	2421	2	0	0	0	0	logfile
✔	8C00	16347	2023-02-23	2022-12-15	2.9	3.49	—	2.8	0.007	0.82	0.0	0.06	14.52	0.01	2.091	3.28	0.84	3.4	96.3	0.3	-0.72	0.88	0.89	3.72	2.8	0.003	0.63	0.0	0.04	14.64	0.00	2.140	6.41	1.31	3.1	96.8	0.1	0.49	1.10	0.88	0.89	2.77	63117	4186	26	1425	0	0	0	logfile
✔	8FD5	29002	2023-02-17	2022-12-02	4.57	4.19	—	10.0	0.016	2.15	4.0	0.13	13.14	0.02	2.541	0.16	0.29	3.8	96.2	0.0	-1.38	0.28	0.02	—	3.5	0.004	0.81	0.0	0.04	13.27	0.01	2.112	15.37	0.00	6.2	93.8	0.0	-1.75	1.59	0.40	0.17	—	3214	419	1	0	0	0	0	logfile
✔	8FBL	28964	2023-02-18	2022-11-29	2.7	2.82	2.73	3.0	0.006	0.72	0.0	0.05	13.38	0.02	2.233	7.63	0.00	1.1	98.9	0.0	1.11	0.44	0.71	4.04	2.9	0.003	0.53	0.0	0.04	16.86	0.00	2.170	7.41	1.75	2.3	97.7	0.0	1.12	1.29	0.68	0.87	4.22	6822	834	6	0	15	0	0	logfile
✔	8HJ4	34832	2023-02-20	2022-11-22	3.1	3.53	3.17	3.4	0.003	0.60	0.0	0.04	15.16	0.00	2.211	12.99	0.73	6.9	92.9	0.3	-1.12	0.78	0.73	2.10	3.4	0.005	0.66	0.0	0.04	16.40	0.00	2.173	14.98	0.31	7.2	92.8	0.0	-0.85	0.47	0.80	0.78	1.83	11652	1163	3	113	0	0	0	logfile
✔	8HiJ	34818	2023-02-18	2022-11-20	3.54	2.56	3.51	3.0	0.004	0.72	1.0	0.05	9.56	0.01	2.315	3.83	0.00	5.2	94.8	0.0	-3.81	0.69	0.69	2.24	3.0	0.003	0.72	1.0	0.04	14.39	0.00	2.029	12.42	0.22	5.0	95.0	0.0	-0.82	1.33	0.72	0.71	2.04	8245	1055	5	0	1	0	0	logfile
✔	8F7R	28908	2023-02-20	2022-11-20	3.28	2.92	3.26	3.4	0.004	0.84	0.0	0.07	7.82	0.01	2.260	4.20	0.00	1.5	98.5	0.0	-0.71	0.54	0.70	1.83	3.3	0.003	0.56	0.0	0.04	14.02	0.00	2.165	11.40	0.24	1.3	98.7	0.0	1.41	0.81	0.57	0.79	2.34	11697	1443	11	0	12	0	0	logfile
✔	8F7X	28912	2023-02-18	2022-11-20	3.28	3.38	3.18	3.4	0.004	0.88	0.0	0.05	8.64	0.01	2.274	2.87	0.10	2.1	97.9	0.0	0.54	0.59	0.78	2.02	3.3	0.003	0.61	0.0	0.04	14.55	0.00	2.042	6.36	0.62	2.0	98.0	0.0	1.46	1.10	0.62	0.85	2.47	8902	1145	6	0	0	0	0	logfile
✔	8HiK	34819	2023-02-18	2022-11-20	3.72	2.46	3.76	3.2	0.005	0.82	0.0	0.05	9.44	0.01	2.282	4.75	0.00	5.3	94.7	0.0	-3.54	0.66	0.63	1.53	2.2	0.005	0.78	0.0	0.04	14.64	0.00	2.107	17.97	0.56	7.5	92.5	0.0	-1.02	0.81	0.69	0.67	1.60	8238	1055	5	0	1	0	0	logfile
✔	8F7W	28911	2023-02-19	2022-11-20	3.19	3.44	3.14	3.4	0.004	0.80	0.0	0.06	8.06	0.01	2.282	3.96	0.10	1.9	98.1	0.0	-1.80	0.58	0.75	1.92	3.4	0.003	0.58	0.0	0.04	13.69	0.00	2.162	8.41	0.00	2.1	97.9	0.0	0.69	1.23	0.60	0.81	2.39	9087	1145	7	0	5	0	0	logfile
✔	8F7S	28909	2023-02-19	2022-11-20	3.0	2.55	2.85	3.0	0.005	0.87	2.0	0.06	8.35	0.01	2.290	3.53	0.00	1.6	98.4	0.0	1.29	0.56	0.77	3.32	2.8	0.003	0.60	2.0	0.04	14.67	0.00	2.107	5.50	1.70	2.2	97.8	0.0	1.91	1.38	0.60	0.83	3.00	9975	1225	10	0	21	0	0	logfile
✔	8F7Q	28907	2023-02-20	2022-11-20	3.22	3.34	3.24	3.4	0.004	0.87	0.0	0.07	8.03	0.01	2.262	3.31	0.00	1.4	98.6	0.0	0.89	0.64	0.78	2.57	3.3	0.003	0.53	0.0	0.04	12.74	0.00	2.135	5.66	0.23	1.8	98.2	0.0	2.02	0.66	0.64	0.83	2.76	11994	1484	11	0	10	0	0	logfile
✔	8Hii	34817	2023-02-18	2022-11-20	3.57	2.49	3.54	3.0	0.004	0.80	0.0	0.05	9.45	0.01	2.260	3.48	0.00	5.4	94.6	0.0	-3.43	0.72	0.70	2.19	3.3	0.003	0.69	0.0	0.04	14.41	0.00	2.106	11.54	0.34	4.3	95.7	0.0	0.29	1.65	0.73	0.72	1.61	8212	1055	4	0	0	0	0	logfile
✔	8HHX	34806	2023-02-26	2022-11-17	3.62	3.70	3.71	3.6	0.003	0.61	0.0	0.05	13.16	0.01	2.114	12.98	0.17	5.7	94.1	0.1	-1.21	0.47	0.60	0.93	3.6	0.004	0.69	0.0	0.05	15.22	0.00	2.031	16.35	0.43	8.2	91.8	0.0	-1.76	0.46	0.46	0.62	1.05	27435	3477	17	0	35	0	0	logfile
✔	8HHY	34807	2023-02-26	2022-11-17	2.77	2.97	2.80	2.9	0.004	0.67	0.0	0.05	13.80	0.00	2.074	14.92	0.00	5.6	94.3	0.1	-1.92	0.55	0.54	1.90	2.9	0.004	0.63	0.0	0.04	15.98	0.00	2.069	14.29	2.42	4.9	95.1	0.0	-1.52	0.41	0.60	0.61	1.68	27420	3483	16	0	32	0	0	logfile
✘	8F6C	28879	2023-02-23	2022-11-16	3.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19344	2396	12	0	12	0	0	logfile
✘	8F68	28877	2023-02-19	2022-11-16	3.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9666	1198	6	0	6	0	0	logfile

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