Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FCT	28992	2024-02-22	2022-12-01	3.42	4.38	3.67	3.9	0.011	0.81	0.0	0.06	12.05	0.00	2.429	0.62	0.05	1.3	98.5	0.1	0.46	0.71	0.53	0.99	3.9	0.003	0.73	0.0	0.04	14.21	0.00	2.168	10.82	1.11	1.7	98.3	0.0	1.97	4.29	0.88	0.85	0.72	34329	4356	13	0	12	0	0	logfile
✔	8FD2	29000	2024-02-20	2022-12-01	3.65	4.42	3.76	3.9	0.003	0.57	0.0	0.04	17.94	0.00	2.136	9.87	2.84	5.4	94.3	0.3	0.44	0.76	0.58	0.67	3.9	0.005	0.83	0.0	0.04	19.08	0.01	2.081	29.54	3.74	6.6	93.2	0.2	-0.63	1.21	0.83	0.74	0.94	25797	2979	13	63	0	0	0	logfile
✔	8FCY	28999	2024-02-18	2022-12-01	3.4	3.72	3.53	3.7	0.003	0.59	0.0	0.04	14.75	0.00	2.224	7.84	0.12	4.5	95.5	0.0	0.50	0.75	0.81	1.99	3.7	0.002	0.54	0.0	0.04	16.13	0.00	2.190	8.12	1.33	4.5	95.5	0.0	0.78	0.46	0.79	0.86	1.75	23142	2864	1	0	4	0	0	logfile
✔	8FCP	28989	2024-02-23	2022-12-01	3.52	3.85	3.83	3.8	0.011	0.89	0.0	0.06	12.11	0.00	2.390	1.07	0.00	1.8	98.1	0.1	0.54	0.69	0.67	1.66	3.8	0.003	0.68	0.0	0.04	15.88	0.00	2.159	9.93	1.81	2.2	97.8	0.0	1.41	1.02	0.75	0.81	1.09	39494	4990	14	0	12	0	0	logfile
✔	8FCU	28993	2024-02-22	2022-12-01	3.19	3.96	3.47	3.7	0.003	0.65	0.0	0.04	19.41	0.00	2.003	15.98	0.72	6.6	92.9	0.5	-0.06	0.83	0.79	2.15	3.7	0.006	0.68	0.0	0.04	19.55	0.01	1.960	15.65	2.79	7.4	92.2	0.5	-0.05	1.16	0.83	0.81	2.01	32692	3594	18	156	2	0	0	logfile
✔	8FD3	29001	2024-02-20	2022-12-01	3.12	3.37	3.24	3.2	0.003	0.57	0.0	0.04	18.48	0.00	2.137	10.11	2.76	5.4	94.3	0.3	0.44	0.77	0.68	1.53	3.2	0.005	0.66	0.0	0.04	18.87	0.00	2.094	12.74	2.57	6.1	93.6	0.3	0.19	1.70	0.84	0.82	2.45	26250	2979	15	85	0	0	0	logfile
✘	8FCA	28978	2024-02-23	2022-12-01	3.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35936	2400	8	0	8	0	17476	logfile
✔	8FCW	28997	2024-02-16	2022-12-01	2.87	4.14	3.11	3.6	0.010	0.90	0.0	0.06	20.73	0.01	1.989	13.44	2.09	3.6	96.0	0.4	-0.40	0.85	0.80	1.84	3.6	0.003	0.65	0.0	0.04	19.92	0.00	1.870	11.82	2.36	3.7	96.0	0.4	0.90	1.32	0.87	0.85	1.71	15170	1715	12	60	10	0	0	logfile
✔	8BUZ	16252	2024-02-14	2022-12-01	3.5	3.43	3.54	3.4	0.003	0.62	0.0	0.04	17.23	0.00	1.915	11.78	0.46	4.8	95.2	0.0	0.41	0.74	0.76	1.17	3.5	0.003	0.61	0.0	0.04	17.54	0.00	1.874	11.37	4.25	5.2	94.8	0.0	0.96	1.40	0.74	0.78	1.24	9921	1223	4	0	3	0	0	logfile
✔	8FCV	28994	2024-02-18	2022-12-01	2.95	4.02	3.25	3.6	0.003	0.62	0.0	0.04	19.30	0.00	1.983	14.48	0.73	4.1	95.4	0.4	0.45	0.85	0.77	1.77	3.6	0.005	0.65	0.0	0.04	19.26	0.00	1.805	13.91	2.52	4.0	95.7	0.3	0.70	1.61	0.87	0.84	1.71	23116	2695	17	60	14	0	0	logfile
✔	8BUU	16246	2024-02-23	2022-11-30	2.9	3.66	2.92	3.1	0.004	0.56	0.0	0.03	22.72	0.01	1.758	4.20	0.95	3.1	96.9	0.1	-1.03	0.83	0.77	3.67	3.1	0.007	0.69	0.0	0.04	22.72	0.01	1.781	12.61	2.93	2.9	97.1	0.0	0.61	0.43	0.92	0.94	2.81	144765	5859	60	4584	107	0	0	logfile
✘	8HLA	34859	2024-02-18	2022-11-29	2.81	2.68	2.73	2.8	0.011	0.96	0.0	0.06	14.25	0.01	2.027	19.94	0.09	8.2	91.7	0.1	-2.33	0.62	0.83	3.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20868	2580	20	0	12	0	0	logfile
✔	8HLB	34871	2024-02-13	2022-11-29	3.63	3.93	3.68	4.0	0.003	0.65	1.0	0.04	13.64	0.01	2.204	10.49	0.00	8.4	91.2	0.4	-2.13	0.70	0.75	2.35	3.9	0.003	0.64	0.0	0.04	15.53	0.00	2.121	11.10	2.94	7.8	91.8	0.4	-2.02	2.45	0.70	0.75	2.09	7461	977	5	0	0	0	0	logfile
✔	8FAZ	28961	2024-02-13	2022-11-29	2.3	2.71	2.34	3.1	0.004	0.62	0.0	0.04	11.25	0.00	1.986	10.57	0.50	2.7	97.3	0.0	0.35	0.83	0.81	3.43	3.1	0.003	0.64	0.0	0.04	14.95	0.00	1.957	15.05	2.11	2.4	97.6	0.0	0.74	2.04	0.83	0.81	2.53	7331	926	7	0	5	0	0	logfile
✘	8HKV	34861	2024-02-23	2022-11-28	4.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile
✘	8HKX	34862	2024-02-14	2022-11-28	3.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile
✘	8HL1	34866	2024-02-13	2022-11-28	3.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile
✘	8HL3	34868	2024-02-13	2022-11-28	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile
✘	8HL4	34869	2024-02-13	2022-11-28	4.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile
✘	8HKU	34860	2024-02-13	2022-11-28	2.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile

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