Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8F33	28830	2024-02-15	2022-11-09	3.28	3.02	3.48	3.0	0.005	0.80	0.0	0.06	13.62	0.01	2.359	6.24	0.00	3.9	96.1	0.0	-1.40	0.66	0.81	4.00	3.0	0.006	0.64	0.0	0.05	15.23	0.00	2.279	10.37	1.89	4.9	95.1	0.0	-0.30	0.77	0.68	0.85	4.21	12545	1535	10	0	5	0	0	logfile
✔	8F34	28831	2024-02-15	2022-11-09	3.12	2.66	3.35	2.9	0.005	0.77	0.0	0.06	14.08	0.00	2.333	6.69	0.00	6.6	93.4	0.0	-0.75	0.62	0.80	3.31	2.9	0.005	0.68	0.0	0.05	16.30	0.00	2.210	9.29	2.47	6.0	94.0	0.0	-0.33	0.76	0.61	0.83	3.07	12545	1535	10	0	5	0	0	logfile
✔	8BKZ	16099	2024-02-16	2022-11-09	2.3	2.35	2.31	2.3	0.003	0.52	0.0	0.04	17.16	0.00	2.085	9.88	0.07	0.8	99.2	0.0	1.74	0.85	0.87	3.52	2.3	0.003	0.50	0.0	0.04	16.91	0.00	1.994	10.41	0.95	1.2	98.8	0.0	1.84	0.21	0.86	0.89	3.93	67875	8680	70	0	42	3505	0	logfile
✔	8BLC	16106	2024-02-13	2022-11-09	2.7	2.79	2.65	2.7	0.005	0.51	0.0	0.04	17.03	0.00	2.062	11.39	1.44	0.9	99.1	0.0	1.13	0.81	0.83	2.54	2.7	0.002	0.46	0.0	0.04	16.74	0.00	2.049	11.32	0.67	0.9	99.1	0.0	1.42	0.25	0.82	0.86	2.40	55646	7336	42	0	42	1298	0	logfile
✔	8BLD	16107	2024-02-13	2022-11-09	4.4	4.20	4.38	3.9	0.004	0.77	0.0	0.05	13.60	0.00	2.174	12.39	0.00	1.8	98.2	0.0	0.34	0.83	0.77	—	3.9	0.003	0.59	0.0	0.04	13.15	0.00	2.123	14.60	0.02	2.1	97.9	0.0	1.05	1.03	0.84	0.78	—	54376	7343	28	0	14	0	0	logfile
✔	8F35	28832	2024-02-15	2022-11-09	3.17	2.86	3.36	3.0	0.005	0.75	0.0	0.05	14.23	0.01	2.235	9.63	0.00	8.9	91.1	0.0	-1.03	0.60	0.79	2.87	3.0	0.004	0.58	0.0	0.05	15.87	0.00	2.178	9.95	1.60	6.0	94.0	0.0	0.18	0.85	0.61	0.84	3.80	12525	1535	5	0	0	0	0	logfile
✔	8F32	28829	2024-02-15	2022-11-09	3.71	3.36	3.64	3.4	0.005	0.84	0.0	0.06	13.43	0.01	2.201	12.25	0.00	4.3	95.7	0.0	-1.60	0.61	0.79	3.14	3.4	0.004	0.59	0.0	0.05	16.23	0.00	2.215	11.45	5.53	3.7	96.3	0.0	-0.01	0.46	0.62	0.81	3.31	12545	1535	10	0	5	0	0	logfile
✔	8BL4	16101	2024-02-21	2022-11-09	3.9	3.96	3.83	3.9	0.018	1.88	5.0	0.10	10.49	0.01	1.199	10.85	0.45	5.9	93.3	0.8	-1.43	0.58	0.67	0.61	3.9	0.004	0.85	0.0	0.05	16.20	0.01	2.039	15.37	4.24	10.1	89.7	0.2	-1.97	1.79	0.62	0.73	0.93	96456	12480	48	0	0	0	0	logfile
✔	8HF7	34715	2024-02-14	2022-11-09	3.8	4.66	1.82	4.2	0.006	1.34	2.0	0.07	14.02	0.01	2.294	7.91	0.61	5.9	93.5	0.6	-3.03	0.63	0.74	0.62	4.3	0.003	0.76	0.0	0.04	16.19	0.00	2.136	16.10	2.53	6.1	93.5	0.4	0.33	0.60	0.64	0.77	0.49	8978	1126	4	0	26	0	0	logfile
✘	8BL2	16100	2024-02-14	2022-11-09	2.3	2.29	2.26	2.2	0.005	0.59	0.0	0.04	16.84	0.00	1.872	11.53	1.01	1.2	98.8	0.0	0.70	0.76	0.75	3.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57128	7336	42	0	42	2780	0	logfile
✔	8HF5	34713	2024-02-14	2022-11-09	2.9	3.54	3.39	3.4	0.011	1.38	7.0	0.10	14.89	0.01	2.063	7.39	3.74	5.4	93.9	0.6	-1.78	0.70	0.85	2.12	3.4	0.003	0.61	0.0	0.04	16.69	0.00	1.977	5.62	1.72	5.3	94.6	0.1	0.79	1.32	0.70	0.86	1.39	8918	1126	4	0	4	0	0	logfile
✔	8BL7	16102	2024-02-13	2022-11-09	4.4	4.06	4.17	3.8	0.004	0.78	0.0	0.05	13.65	0.00	2.270	7.33	0.00	1.5	98.5	0.0	-0.37	0.83	0.78	—	3.8	0.003	0.56	0.0	0.04	13.10	0.00	2.150	14.18	0.00	1.5	98.5	0.0	1.31	0.31	0.84	0.78	—	54474	7350	28	0	14	0	0	logfile
✔	8HF4	34712	2024-02-14	2022-11-09	2.8	3.66	3.29	3.5	0.006	0.75	1.0	0.05	14.96	0.00	2.207	5.73	1.11	4.7	94.9	0.4	2.04	0.73	0.86	1.86	3.5	0.002	0.53	0.0	0.04	16.56	0.00	2.194	4.96	1.41	4.3	95.7	0.0	2.32	0.95	0.71	0.85	2.02	8916	1126	4	0	2	0	0	logfile
✔	8BKY	16098	2024-02-17	2022-11-09	3.6	3.72	3.43	3.7	0.003	0.59	0.0	0.05	16.82	0.00	1.708	9.74	0.03	5.4	94.6	0.0	-0.58	0.58	0.85	2.68	3.7	0.002	0.54	0.0	0.05	17.35	0.00	2.182	5.07	2.50	6.3	93.7	0.0	-0.29	0.49	0.59	0.86	2.39	68280	8808	24	0	0	0	0	logfile
✔	8F3D	28846	2024-02-14	2022-11-09	3.4	2.64	3.48	3.3	0.005	0.93	0.0	0.05	13.03	0.01	1.784	21.50	0.39	9.3	90.7	0.0	-1.29	0.57	0.62	0.97	2.6	0.004	0.74	0.0	0.05	16.28	0.01	2.072	13.49	3.99	9.8	90.2	0.0	-1.08	2.63	0.59	0.67	1.00	57846	7464	18	0	6	0	0	logfile
✔	8BKG	16097	2024-02-22	2022-11-09	3.2	3.18	3.17	3.2	0.003	0.57	0.0	0.04	15.30	0.00	2.241	4.64	0.57	3.6	96.4	0.0	-0.35	0.74	0.84	2.76	3.2	0.003	0.54	0.0	0.04	15.77	0.00	2.027	7.17	1.32	3.5	96.4	0.1	-0.04	0.37	0.78	0.88	3.20	32824	4088	4	0	0	0	0	logfile
✔	8F38	28833	2024-02-21	2022-11-09	2.64	2.85	2.70	2.8	0.003	0.60	0.0	0.05	19.17	0.01	2.148	3.68	4.08	2.3	97.4	0.3	0.19	0.71	0.84	3.74	2.8	0.002	0.54	0.0	0.04	16.61	0.00	2.238	4.29	3.02	2.0	97.9	0.1	0.61	0.73	0.75	0.89	3.84	16952	2121	21	0	33	50	0	logfile
✔	8BLE	16108	2024-02-13	2022-11-09	4.0	3.95	4.02	3.7	0.005	0.85	0.0	0.05	13.61	0.00	2.221	8.82	0.00	1.8	98.2	0.0	-0.61	0.82	0.80	—	3.7	0.004	0.61	0.0	0.04	14.34	0.00	2.159	14.82	1.31	1.2	98.8	0.0	0.85	0.35	0.82	0.81	—	54474	7350	28	0	14	0	0	logfile
✔	8BLF	16109	2024-02-13	2022-11-09	3.9	3.71	3.78	3.5	0.004	0.68	0.0	0.04	13.76	0.00	2.210	9.55	0.00	1.4	98.6	0.0	0.29	0.80	0.79	1.52	3.5	0.003	0.57	0.0	0.04	14.74	0.00	2.188	12.45	1.13	1.2	98.8	0.0	1.20	0.36	0.79	0.77	1.24	54376	7343	28	0	14	0	0	logfile
✔	8F3C	28845	2024-02-20	2022-11-09	3.4	3.72	3.47	3.7	0.004	0.66	0.0	0.05	17.64	0.00	2.029	12.26	1.15	4.2	95.7	0.1	0.01	0.75	0.80	1.89	3.7	0.004	0.61	0.0	0.04	18.81	0.00	1.945	14.41	2.19	5.0	95.0	0.0	0.14	1.13	0.73	0.81	1.39	26819	3172	9	97	1	0	0	logfile

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