Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XU4	33458	2024-02-13	2022-05-18	3.2	3.46	3.16	3.3	0.012	1.02	0.0	0.05	14.24	0.00	2.094	2.64	0.31	6.3	93.7	0.0	-1.31	0.83	0.82	3.45	3.3	0.002	0.54	0.0	0.04	13.63	0.00	2.017	5.53	0.62	4.7	95.3	0.0	-0.49	1.11	0.84	0.84	2.96	52371	3330	18	0	69	0	25311	logfile
✔	7XU1	33455	2024-02-13	2022-05-18	3.0	3.16	3.23	3.1	0.012	0.88	1.0	0.07	13.72	0.01	2.068	2.28	0.24	3.9	96.1	0.0	-0.92	0.81	0.82	3.49	3.1	0.003	0.50	1.0	0.05	13.89	0.00	1.979	4.35	0.62	3.9	96.1	0.0	-0.51	0.35	0.83	0.85	3.36	52082	3309	19	0	69	0	25165	logfile
✔	7XU0	33454	2024-02-13	2022-05-18	2.9	3.11	2.88	3.0	0.012	0.91	0.0	0.05	13.51	0.00	2.095	2.11	0.14	3.1	96.9	0.0	-0.43	0.83	0.84	4.05	3.0	0.003	0.51	0.0	0.04	13.42	0.00	2.075	3.87	0.70	3.6	96.4	0.0	-0.20	0.33	0.84	0.86	4.13	51995	3300	20	0	72	0	25102	logfile
✔	7XU6	33460	2024-02-25	2022-05-18	2.9	3.40	2.92	3.2	0.012	0.96	0.0	0.05	14.18	0.01	2.069	3.27	0.74	6.7	93.3	0.0	-1.74	0.80	0.78	2.99	3.2	0.003	0.55	0.0	0.04	13.85	0.00	1.936	8.27	0.67	5.1	94.9	0.0	-0.79	0.45	0.82	0.81	3.06	51464	3267	18	0	66	0	24902	logfile
✘	8CW9	27024	2024-02-21	2022-05-18	3.46	2.48	—	2.2	0.002	0.67	0.0	0.05	13.45	0.01	2.196	3.46	1.25	5.7	94.1	0.1	-1.23	0.74	0.73	2.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20229	2658	18	0	3	0	0	logfile
✔	8CVY	27021	2024-02-17	2022-05-18	3.6	3.82	3.60	3.8	0.008	1.47	16.0	0.12	15.01	0.01	2.214	10.00	6.05	2.7	97.3	0.0	0.51	0.70	0.79	1.45	3.8	0.003	0.63	0.0	0.04	16.61	0.00	2.205	14.19	3.58	3.7	96.3	0.0	0.87	0.97	0.72	0.78	1.71	17930	2226	7	0	0	0	0	logfile
✔	8CVZ	27022	2024-02-19	2022-05-18	3.52	3.83	3.62	3.9	0.008	1.57	40.0	0.13	14.87	0.01	2.118	11.00	5.85	3.0	96.9	0.1	-0.25	0.70	0.78	1.78	3.8	0.004	0.67	0.0	0.04	16.42	0.00	2.064	13.96	2.85	3.8	96.2	0.0	0.48	1.25	0.69	0.75	1.47	24517	3070	10	0	0	0	0	logfile
✔	8CVX	27020	2024-02-18	2022-05-18	3.5	3.62	3.40	3.6	0.009	1.58	16.0	0.11	16.38	0.01	2.272	8.19	5.13	4.5	95.3	0.2	-3.03	0.64	0.75	1.74	3.6	0.003	0.60	0.0	0.04	17.11	0.00	2.126	10.88	2.10	2.6	97.4	0.0	-0.34	1.52	0.67	0.78	1.87	20448	2541	12	0	4	0	0	logfile
✔	8CVN	27010	2024-02-13	2022-05-18	2.4	3.23	2.42	3.1	0.014	1.53	3.0	0.08	18.40	0.00	2.524	1.49	1.21	2.4	97.6	0.0	0.60	0.84	0.87	3.98	3.1	0.002	0.82	0.0	0.04	17.99	0.00	2.411	2.85	1.69	1.6	98.4	0.0	1.67	0.81	0.76	0.87	3.12	4054	512	4	0	4	0	0	logfile
✔	7XUL	33473	2024-02-15	2022-05-18	3.16	3.62	3.09	3.5	0.009	0.86	0.0	0.05	13.64	0.01	2.330	3.66	0.34	6.5	93.4	0.1	-3.95	0.64	0.86	3.15	3.5	0.003	0.56	0.0	0.04	14.28	0.00	2.221	5.87	1.52	4.8	95.1	0.1	0.74	0.37	0.67	0.88	3.02	11082	1380	4	0	10	0	0	logfile
✔	7XUJ	33471	2024-02-15	2022-05-18	2.8	3.15	2.67	3.0	0.010	0.94	0.0	0.06	13.43	0.01	2.262	2.73	1.82	6.7	93.3	0.0	-3.62	0.65	0.86	3.54	3.0	0.003	0.62	0.0	0.04	14.02	0.00	2.041	6.11	1.40	6.2	93.8	0.0	0.04	0.41	0.66	0.87	3.40	11296	1406	4	0	10	0	0	logfile
✔	7ZVT	14986	2024-02-14	2022-05-17	2.74	3.38	2.78	3.2	0.004	0.57	0.0	0.04	19.19	0.00	2.192	7.49	2.94	1.6	98.4	0.0	1.55	0.83	0.89	3.04	3.2	0.003	0.54	0.0	0.04	19.22	0.00	2.086	8.12	2.07	1.6	98.4	0.0	1.54	0.24	0.82	0.90	2.85	8842	1022	4	30	1	0	0	logfile
✔	8CUD	26998	2024-02-13	2022-05-17	2.94	2.75	2.95	2.8	0.005	0.67	0.0	0.05	15.61	0.00	2.433	3.10	0.00	1.9	98.1	0.0	1.42	0.49	0.83	1.26	2.8	0.002	0.47	0.0	0.04	16.74	0.00	2.214	3.98	3.05	1.2	98.8	0.0	2.21	0.92	0.48	0.83	1.19	3294	433	1	0	0	2	0	logfile
✘	8CV0	27004	2024-02-20	2022-05-17	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27791	1850	4	0	2	0	13711	logfile
✔	7XTG	33448	2024-02-16	2022-05-17	2.2	2.41	2.26	2.5	0.004	0.76	0.0	0.04	18.20	0.01	2.094	13.57	2.55	4.4	95.4	0.1	-0.48	0.60	0.72	1.71	2.4	0.003	0.61	0.0	0.04	17.18	0.00	2.241	7.69	1.74	3.6	96.3	0.1	2.18	2.08	0.67	0.89	3.00	15435	2034	15	0	3	0	0	logfile
✔	7XTK	33451	2024-02-13	2022-05-17	2.89	3.27	2.92	3.2	0.004	0.87	0.0	0.04	13.37	0.01	1.873	9.37	0.00	6.4	92.3	1.3	-1.05	0.59	0.83	2.77	3.2	0.003	0.63	0.0	0.04	14.86	0.00	2.156	7.65	1.47	6.1	93.1	0.8	0.95	1.72	0.57	0.83	1.91	3159	395	1	0	0	0	0	logfile
✔	8CV2	27006	2024-02-14	2022-05-17	2.44	2.61	2.44	2.8	0.003	0.53	0.0	0.04	14.13	0.00	2.281	3.79	0.00	1.6	98.4	0.0	1.88	0.64	0.85	1.65	2.7	0.004	0.57	0.0	0.04	14.95	0.00	2.212	3.74	2.40	1.1	98.9	0.0	2.67	0.23	0.61	0.85	1.52	9882	1299	6	0	6	0	0	logfile
✘	8CUZ	27003	2024-02-20	2022-05-17	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27791	1850	4	0	2	0	13711	logfile
✔	8CUE	26999	2024-02-23	2022-05-17	3.2	3.57	3.25	3.7	0.010	1.82	0.0	0.04	24.54	0.00	2.541	2.88	0.00	1.5	98.5	0.0	0.78	0.73	0.83	2.63	3.6	0.003	0.48	0.0	0.03	18.37	0.00	2.268	6.49	1.37	0.3	99.7	0.0	2.21	0.63	0.69	0.84	2.43	37240	4900	140	0	70	0	0	logfile
✔	7XTi	33450	2024-02-19	2022-05-17	3.9	3.81	3.72	3.7	0.006	0.74	1.0	0.05	14.73	0.01	1.959	6.73	0.12	2.6	97.4	0.1	1.23	0.58	0.74	1.07	3.7	0.004	0.71	0.0	0.04	17.86	0.00	2.052	15.90	3.19	3.5	96.4	0.0	0.46	1.80	0.60	0.77	1.14	78660	9332	41	178	11	0	0	logfile

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