Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Uo7	26641	2024-02-15	2022-04-12	3.09	3.90	3.15	3.5	0.005	0.64	0.0	0.04	15.46	0.00	2.012	8.57	0.76	5.0	95.0	0.0	-1.61	0.87	0.81	2.86	3.6	0.002	0.56	0.0	0.04	16.66	0.00	2.055	10.95	2.46	3.6	96.3	0.1	-0.38	1.20	0.89	0.81	2.35	12262	1371	7	66	4	0	0	logfile
✔	7XiB	33201	2024-02-13	2022-04-12	2.23	2.35	2.26	2.4	0.009	0.71	0.0	0.17	18.40	0.01	2.184	6.98	4.14	3.9	96.1	0.0	-1.86	0.65	0.81	5.40	2.4	0.003	0.73	0.0	0.07	18.52	0.00	2.202	6.32	3.43	3.2	96.8	0.0	0.01	0.90	0.66	0.83	4.63	7178	815	6	24	2	196	0	logfile
✔	7UNM	26627	2024-02-15	2022-04-11	2.61	3.48	2.66	3.3	0.002	0.43	0.0	0.04	11.23	0.00	2.087	3.44	0.00	0.5	99.5	0.0	3.34	0.67	0.82	2.41	3.3	0.003	0.54	0.0	0.04	14.37	0.00	1.949	4.30	0.48	1.9	98.1	0.0	4.15	0.81	0.56	0.79	1.71	11694	736	6	0	5	55	5920	logfile
✔	7ZJL	14750	2024-02-17	2022-04-11	2.6	2.76	2.80	2.7	0.012	1.76	11.0	0.09	12.92	0.01	2.495	0.07	0.48	4.0	95.9	0.0	-0.24	0.68	0.69	3.58	2.7	0.006	0.66	0.0	0.05	14.99	0.00	1.929	5.23	1.60	3.7	96.3	0.0	-0.13	0.85	0.76	0.80	3.20	69412	4551	9	0	0	0	34272	logfile
✔	7ZJH	14748	2024-02-17	2022-04-11	3.39	3.74	3.43	3.6	0.002	0.52	0.0	0.04	11.15	0.00	2.223	5.18	2.73	7.5	92.4	0.1	-0.54	0.68	0.81	1.89	3.6	0.004	0.68	0.0	0.04	14.64	0.00	2.190	8.17	2.63	8.6	91.2	0.2	-0.13	0.98	0.70	0.84	1.72	18984	2344	4	0	0	0	0	logfile
✔	7UNU	26633	2024-02-27	2022-04-11	2.9	3.16	2.89	3.1	0.007	0.70	0.0	0.04	22.66	0.02	1.895	6.14	0.20	8.0	91.6	0.4	-1.70	0.81	0.89	3.42	3.1	0.005	0.72	4.0	0.04	22.80	0.01	1.751	7.38	3.00	6.4	93.2	0.4	-0.94	2.56	0.79	0.89	2.71	149259	6488	86	4606	609	201	0	logfile
✘	7UNR	26630	2024-02-27	2022-04-11	2.9	3.18	2.93	3.1	0.005	0.64	2.0	0.04	22.70	0.02	1.879	6.56	0.26	7.2	92.4	0.4	-1.63	0.79	0.88	3.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	149327	6502	82	4606	632	200	0	logfile
✔	7UNV	26634	2024-02-28	2022-04-11	2.7	3.21	2.68	3.0	0.005	0.62	0.0	0.04	22.91	0.02	1.751	6.95	0.16	6.6	93.0	0.4	-1.44	0.90	0.89	3.23	3.0	0.003	0.69	0.0	0.04	22.89	0.01	1.799	8.30	2.72	6.8	92.9	0.3	-0.70	0.37	0.87	0.92	2.84	149599	6534	85	4605	598	295	0	logfile
✔	7ZJi	14749	2024-02-17	2022-04-11	3.4	3.74	3.36	3.6	0.003	0.66	0.0	0.04	14.20	0.00	2.197	10.45	0.10	8.3	91.5	0.3	-0.82	0.69	0.77	1.05	3.6	0.004	0.73	0.0	0.04	16.32	0.00	2.084	11.95	2.22	9.5	90.2	0.3	-0.78	1.28	0.69	0.81	1.00	19231	2375	4	0	0	0	0	logfile
✔	7UNL	26626	2024-02-15	2022-04-11	2.45	3.35	2.50	3.1	0.003	0.56	0.0	0.04	14.66	0.00	2.143	2.41	1.94	1.1	98.9	0.0	2.30	0.72	0.83	3.52	3.1	0.003	0.52	0.0	0.04	14.62	0.00	2.002	3.71	0.97	0.8	99.2	0.0	4.39	0.66	0.55	0.81	3.07	11724	734	6	0	8	120	5900	logfile
✔	7ZJG	14747	2024-02-17	2022-04-11	3.49	3.94	3.50	3.8	0.003	0.64	0.0	0.04	13.03	0.00	2.241	9.59	0.52	8.3	91.3	0.3	-0.33	0.65	0.75	1.88	3.8	0.004	0.69	0.0	0.04	15.21	0.00	2.113	12.39	2.54	8.5	91.2	0.3	-0.07	0.58	0.66	0.80	1.71	19532	2396	4	0	0	0	0	logfile
✔	7UNW	26635	2024-02-28	2022-04-11	2.6	3.21	2.65	3.0	0.006	0.68	0.0	0.04	22.87	0.02	1.876	6.31	0.02	6.8	92.8	0.3	-1.25	0.90	0.88	3.37	3.0	0.004	0.69	0.0	0.04	22.83	0.01	1.742	8.13	2.91	6.6	93.1	0.3	-0.51	0.91	0.88	0.93	2.91	149945	6534	85	4605	799	352	0	logfile
✔	7UNK	26625	2024-02-15	2022-04-11	3.45	3.69	3.50	3.6	0.003	0.66	0.0	0.04	15.44	0.01	2.169	7.74	0.75	3.0	97.0	0.0	1.09	0.72	0.83	0.68	3.6	0.003	0.90	1.0	0.04	16.97	0.00	2.199	8.87	1.50	2.7	97.3	0.0	1.51	0.46	0.76	0.88	0.31	10992	1401	4	0	0	0	0	logfile
✘	7UND	26621	2024-02-18	2022-04-10	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	129454	8269	40	269	10	0	61541	logfile
✔	7UNF	26623	2024-02-16	2022-04-10	4.08	3.35	—	3.5	0.007	0.98	0.0	0.05	15.89	0.01	2.011	4.35	0.27	4.8	95.2	0.0	-5.90	0.66	0.82	—	3.5	0.005	0.70	0.0	0.05	15.01	0.00	2.120	7.46	0.03	5.4	94.6	0.0	-1.31	1.03	0.66	0.83	—	66971	8805	40	0	26	0	0	logfile
✔	7ZJE	14746	2024-02-17	2022-04-10	3.12	3.70	3.28	3.6	0.002	0.57	0.0	0.04	11.99	0.00	2.254	7.29	0.19	8.3	91.1	0.5	0.64	0.66	0.80	1.92	3.6	0.002	0.59	0.0	0.04	14.69	0.00	2.183	8.12	0.67	8.1	91.4	0.5	1.40	1.25	0.64	0.80	1.81	19284	2380	4	0	0	0	0	logfile
✔	7UNE	26622	2024-02-23	2022-04-10	3.73	2.92	3.62	3.3	0.007	0.97	0.0	0.06	15.56	0.01	2.254	4.94	0.47	5.5	94.5	0.0	-5.40	0.54	0.78	2.44	3.2	0.003	0.64	0.0	0.04	17.27	0.00	2.097	9.32	2.97	4.7	95.3	0.0	-1.54	1.55	0.54	0.79	1.70	36209	4663	14	0	0	0	0	logfile
✔	7ZJD	14745	2024-02-17	2022-04-10	2.94	3.35	2.98	3.2	0.003	0.56	0.0	0.04	14.12	0.00	2.311	5.44	0.00	6.6	93.1	0.3	0.00	0.66	0.84	2.31	3.2	0.005	0.66	0.0	0.04	16.37	0.00	2.285	7.11	1.58	7.8	91.9	0.3	0.43	0.93	0.65	0.85	2.49	19360	2388	4	0	0	0	0	logfile
✔	7XHT	33198	2024-02-13	2022-04-10	2.55	2.77	2.54	2.8	0.003	0.68	0.0	0.03	21.15	0.00	2.014	6.29	0.00	1.8	98.2	0.0	0.35	0.69	0.85	5.47	2.8	0.002	0.51	0.0	0.03	21.52	0.00	1.996	7.10	1.75	1.5	98.5	0.0	0.70	0.34	0.65	0.84	4.71	7839	395	6	220	3	0	0	logfile
✘	7UNC	26620	2024-02-13	2022-04-10	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	105726	7924	38	311	9	0	48096	logfile

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