Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PS9	17847	2024-02-21	2023-07-13	2.9	2.54	2.90	2.8	0.013	1.86	0.0	0.09	14.57	0.01	2.131	2.78	0.37	4.9	94.8	0.2	-2.87	0.65	0.89	4.41	2.8	0.004	0.59	0.0	0.04	15.92	0.00	2.102	7.00	1.08	2.5	97.5	0.0	1.10	1.13	0.65	0.87	3.73	29735	3788	4	0	2	0	0	logfile
✔	8PSS	17861	2024-02-17	2023-07-13	2.83	2.94	2.75	2.9	0.002	0.44	0.0	0.03	18.02	0.00	1.778	3.66	1.29	2.4	97.5	0.1	1.49	0.79	0.90	3.63	2.8	0.003	0.46	0.0	0.04	17.69	0.00	1.841	3.83	2.15	2.4	97.6	0.0	1.46	0.30	0.78	0.90	3.72	17722	1071	7	29	2	0	8690	logfile
✔	8PSQ	17860	2024-02-16	2023-07-13	2.65	2.51	2.61	2.6	0.003	0.47	0.0	0.04	18.19	0.00	1.928	2.79	1.19	2.0	97.9	0.1	1.30	0.73	0.89	3.82	2.6	0.003	0.51	0.0	0.04	18.04	0.00	2.007	3.23	2.03	2.2	97.8	0.0	1.36	0.28	0.72	0.89	4.27	16079	969	7	28	2	1	7898	logfile
✔	8PSD	17850	2024-02-25	2023-07-13	2.9	3.28	3.06	3.3	0.004	0.51	0.0	0.04	12.30	0.00	2.065	2.20	1.60	4.3	95.7	0.0	-0.16	0.64	0.81	3.11	3.3	0.003	0.65	1.0	0.04	13.55	0.00	1.957	3.50	2.08	4.9	95.1	0.0	-0.44	0.57	0.67	0.83	3.04	48067	3076	6	0	36	0	23498	logfile
✔	8PSK	17854	2024-02-21	2023-07-13	2.8	2.38	2.78	2.8	0.013	1.82	0.0	0.09	14.46	0.01	2.142	3.31	0.25	4.5	95.2	0.3	-2.78	0.65	0.88	4.06	2.7	0.003	0.56	0.0	0.04	16.18	0.00	2.090	6.97	1.39	2.6	97.4	0.1	0.76	0.41	0.64	0.86	3.61	29604	3776	4	0	1	0	0	logfile
✔	8PT6	17868	2024-02-18	2023-07-13	3.03	2.81	2.82	2.9	0.003	0.55	0.0	0.04	18.46	0.00	1.826	5.57	2.43	3.7	96.2	0.1	1.06	0.74	0.84	3.10	2.9	0.002	0.48	0.0	0.04	17.94	0.00	1.852	5.48	2.24	3.6	96.4	0.1	1.00	0.36	0.75	0.85	3.07	20436	1242	10	28	6	0	10051	logfile
✔	8PSN	17857	2024-02-18	2023-07-13	2.73	2.54	2.70	2.6	0.003	0.57	1.0	0.04	18.65	0.00	1.671	3.50	2.57	2.1	97.8	0.1	1.12	0.74	0.87	4.16	2.6	0.003	0.50	0.0	0.04	18.38	0.00	1.836	3.50	2.48	2.1	97.8	0.1	0.84	0.26	0.74	0.88	4.42	22266	1361	12	28	6	2	10965	logfile
✔	8PRV	17839	2024-02-21	2023-07-12	2.9	2.61	2.88	2.5	0.023	2.00	1.0	0.09	15.60	0.01	1.611	3.25	0.22	5.3	94.5	0.2	-3.14	0.73	0.89	4.32	2.5	0.004	0.56	0.0	0.04	16.24	0.00	2.172	6.44	1.54	2.3	97.7	0.0	0.71	0.33	0.72	0.88	3.69	29814	3781	6	0	5	0	0	logfile
✔	8TFK	41232	2024-02-19	2023-07-11	2.66	2.90	2.75	3.3	0.006	1.35	0.0	0.10	19.32	0.00	1.729	6.79	2.68	3.5	96.5	0.0	-0.92	0.37	0.33	0.08	2.9	0.004	0.69	0.0	0.10	18.13	0.00	1.765	4.75	1.92	3.1	96.9	0.0	0.14	1.43	0.71	0.88	3.93	81543	5280	24	0	60	0	39601	logfile
✔	8K1L	36794	2024-02-14	2023-07-11	3.44	3.80	3.50	3.7	0.004	1.17	0.0	0.05	16.42	0.01	2.067	19.32	0.37	5.9	94.1	0.0	-1.16	0.65	0.85	1.91	3.7	0.003	0.84	0.0	0.04	16.84	0.00	2.184	12.11	3.39	5.4	94.5	0.2	-0.01	0.34	0.67	0.86	1.81	10026	1271	3	0	1	0	0	logfile
✔	8PQ2	17819	2024-02-13	2023-07-10	3.85	4.01	3.65	3.9	0.002	0.51	0.0	0.04	10.37	0.00	2.133	5.53	2.73	8.3	91.7	0.0	-2.04	0.60	0.79	3.14	3.9	0.003	0.56	0.0	0.04	13.07	0.00	2.022	8.38	3.33	11.2	88.8	0.0	-2.27	0.56	0.60	0.80	3.19	5956	390	4	0	1	0	2891	logfile
✔	8PPT	17815	2024-02-17	2023-07-10	2.9	3.15	3.01	3.2	0.003	0.55	0.0	0.04	19.22	0.00	1.950	6.05	2.82	3.8	96.2	0.0	-0.19	0.71	0.84	2.71	3.2	0.003	0.56	0.0	0.04	19.50	0.00	1.949	6.10	2.62	3.8	96.2	0.0	0.29	0.33	0.71	0.85	2.61	19620	2376	9	34	6	0	0	logfile
✔	8TFB	41228	2024-02-20	2023-07-09	2.99	3.29	3.14	3.3	0.003	0.47	2.0	0.04	13.18	0.00	2.087	4.51	0.00	1.6	98.4	0.0	1.54	0.56	0.66	3.91	3.3	0.002	0.47	0.0	0.04	15.72	0.00	2.078	4.45	1.36	1.5	98.5	0.0	1.38	0.49	0.78	0.87	3.56	42056	5316	24	0	12	0	0	logfile
✔	8K0B	36759	2024-02-13	2023-07-08	3.56	2.51	3.58	1.9	0.004	0.86	2.0	0.05	17.34	0.00	2.195	14.96	1.28	8.0	92.0	0.0	-0.63	0.53	0.53	0.79	2.0	0.004	0.78	0.0	0.04	17.55	0.00	2.156	15.66	6.39	8.3	91.7	0.0	-0.41	0.44	0.54	0.54	0.38	5689	689	1	0	0	0	0	logfile
✔	8PPo	17806	2024-02-13	2023-07-07	2.0	2.30	1.95	2.2	0.008	1.20	1.0	0.07	13.41	0.01	2.625	0.29	0.00	6.7	93.3	0.0	0.71	0.58	0.84	6.50	2.2	0.004	0.53	0.0	0.06	14.00	0.00	2.289	0.29	0.52	0.0	100.0	0.0	1.18	0.37	0.50	0.88	5.44	1696	240	16	0	0	0	0	logfile
✔	8TF4	41219	2024-02-17	2023-07-07	2.86	3.17	2.99	3.2	0.012	1.77	0.0	0.09	15.62	0.01	2.302	5.28	0.58	2.0	98.0	0.0	-0.60	0.57	0.85	4.97	3.2	0.002	0.51	0.0	0.04	16.34	0.00	2.181	5.18	0.48	1.0	99.0	0.0	2.10	0.94	0.64	0.87	4.27	19888	2408	8	0	20	0	0	logfile
✔	8TF3	41218	2024-02-17	2023-07-07	2.94	3.18	2.97	3.3	0.012	1.80	4.0	0.09	14.59	0.02	2.356	4.45	0.00	2.7	97.3	0.0	-0.94	0.57	0.83	5.13	3.3	0.003	0.57	0.0	0.04	15.90	0.00	2.202	5.85	1.39	1.5	98.5	0.0	1.83	0.47	0.65	0.87	3.64	19888	2408	8	0	20	0	0	logfile
✔	8TF2	41217	2024-02-17	2023-07-07	2.57	2.79	2.66	2.8	0.012	1.75	3.0	0.09	15.41	0.01	2.484	4.43	0.38	1.5	98.5	0.0	0.29	0.57	0.85	5.52	2.9	0.002	0.49	0.0	0.04	16.22	0.00	2.228	5.45	1.97	1.0	99.0	0.0	2.00	1.72	0.65	0.89	4.52	19856	2408	8	0	24	0	0	logfile
✘	8JZR	36751	2024-02-13	2023-07-06	3.25	3.52	3.29	3.5	0.007	0.77	0.0	0.05	12.74	0.01	2.381	4.82	0.00	3.8	95.7	0.4	0.75	0.64	0.79	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3474	456	2	0	1	0	0	logfile
✔	8JZS	36752	2024-02-13	2023-07-06	2.95	3.15	2.92	3.2	0.008	0.93	0.0	0.06	13.27	0.01	2.299	10.90	0.00	4.4	95.2	0.4	0.71	0.69	0.82	1.94	3.2	0.003	0.59	0.0	0.04	14.61	0.00	2.206	5.71	2.13	4.6	95.4	0.0	1.31	0.53	0.64	0.83	2.32	7500	972	4	0	6	0	0	logfile

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