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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8PSD | 17850 | 2024-02-25 | 2023-07-13 | 2.9 | 3.28 | 3.06 | 3.3 | 0.004 | 0.51 | 0.0 | 0.04 | 12.30 | 0.00 | 2.065 | 2.20 | 1.60 | 4.3 | 95.7 | 0.0 | -0.16 | 0.64 | 0.81 | 3.11 | 3.3 | 0.003 | 0.65 | 1.0 | 0.04 | 13.55 | 0.00 | 1.957 | 3.50 | 2.08 | 4.9 | 95.1 | 0.0 | -0.44 | 0.57 | 0.67 | 0.83 | 3.04 | 48067 | 3076 | 6 | 0 | 36 | 0 | 23498 | logfile |
✔ | 8PSQ | 17860 | 2024-02-16 | 2023-07-13 | 2.65 | 2.51 | 2.61 | 2.6 | 0.003 | 0.47 | 0.0 | 0.04 | 18.19 | 0.00 | 1.928 | 2.79 | 1.19 | 2.0 | 97.9 | 0.1 | 1.30 | 0.73 | 0.89 | 3.82 | 2.6 | 0.003 | 0.51 | 0.0 | 0.04 | 18.04 | 0.00 | 2.007 | 3.23 | 2.03 | 2.2 | 97.8 | 0.0 | 1.36 | 0.28 | 0.72 | 0.89 | 4.27 | 16079 | 969 | 7 | 28 | 2 | 1 | 7898 | logfile |
✔ | 8PSP | 17859 | 2024-02-21 | 2023-07-13 | 2.9 | 2.48 | 2.81 | 2.8 | 0.013 | 1.86 | 4.0 | 0.09 | 14.80 | 0.01 | 2.135 | 2.92 | 0.89 | 5.5 | 94.1 | 0.3 | -3.17 | 0.65 | 0.88 | 3.89 | 2.8 | 0.003 | 0.57 | 0.0 | 0.04 | 16.07 | 0.00 | 2.139 | 6.08 | 1.14 | 2.4 | 97.6 | 0.0 | 1.08 | 0.41 | 0.64 | 0.87 | 3.27 | 29695 | 3788 | 5 | 0 | 2 | 0 | 0 | logfile |
✔ | 8PSo | 17858 | 2024-02-16 | 2023-07-13 | 2.4 | 2.34 | 2.37 | 2.4 | 0.003 | 0.56 | 0.0 | 0.04 | 18.69 | 0.00 | 1.693 | 2.47 | 1.55 | 2.1 | 97.9 | 0.0 | 1.47 | 0.74 | 0.88 | 4.68 | 2.4 | 0.002 | 0.50 | 0.0 | 0.04 | 18.01 | 0.00 | 1.861 | 2.47 | 1.07 | 1.9 | 98.1 | 0.0 | 1.17 | 0.15 | 0.73 | 0.89 | 4.78 | 16201 | 971 | 13 | 28 | 4 | 44 | 7937 | logfile |
✔ | 8PSG | 17852 | 2024-02-21 | 2023-07-13 | 3.7 | 3.67 | 3.55 | 3.3 | 0.014 | 1.89 | 0.0 | 0.09 | 14.86 | 0.01 | 2.169 | 5.38 | 0.65 | 7.3 | 92.4 | 0.3 | -3.71 | 0.73 | 0.84 | 2.35 | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 15.80 | 0.00 | 2.115 | 10.68 | 1.63 | 3.1 | 96.9 | 0.0 | 0.41 | 1.13 | 0.73 | 0.83 | 2.14 | 29610 | 3777 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 8PT6 | 17868 | 2024-02-18 | 2023-07-13 | 3.03 | 2.81 | 2.82 | 2.9 | 0.003 | 0.55 | 0.0 | 0.04 | 18.46 | 0.00 | 1.826 | 5.57 | 2.43 | 3.7 | 96.2 | 0.1 | 1.06 | 0.74 | 0.84 | 3.10 | 2.9 | 0.002 | 0.48 | 0.0 | 0.04 | 17.94 | 0.00 | 1.852 | 5.48 | 2.24 | 3.6 | 96.4 | 0.1 | 1.00 | 0.36 | 0.75 | 0.85 | 3.07 | 20436 | 1242 | 10 | 28 | 6 | 0 | 10051 | logfile |
✔ | 8PSF | 17851 | 2024-02-21 | 2023-07-13 | 2.8 | 3.32 | 2.81 | 2.9 | 0.013 | 1.85 | 0.0 | 0.09 | 14.52 | 0.01 | 2.200 | 3.01 | 0.71 | 4.7 | 95.0 | 0.3 | -3.14 | 0.78 | 0.90 | 4.34 | 3.0 | 0.003 | 0.57 | 0.0 | 0.04 | 15.25 | 0.00 | 1.370 | 6.03 | 0.96 | 2.4 | 97.6 | 0.0 | 1.37 | 1.15 | 0.77 | 0.90 | 3.41 | 29204 | 3776 | 5 | 0 | 2 | 0 | 0 | logfile |
✔ | 8PRV | 17839 | 2024-02-21 | 2023-07-12 | 2.9 | 2.61 | 2.88 | 2.5 | 0.023 | 2.00 | 1.0 | 0.09 | 15.60 | 0.01 | 1.611 | 3.25 | 0.22 | 5.3 | 94.5 | 0.2 | -3.14 | 0.73 | 0.89 | 4.32 | 2.5 | 0.004 | 0.56 | 0.0 | 0.04 | 16.24 | 0.00 | 2.172 | 6.44 | 1.54 | 2.3 | 97.7 | 0.0 | 0.71 | 0.33 | 0.72 | 0.88 | 3.69 | 29814 | 3781 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 8TFK | 41232 | 2024-02-19 | 2023-07-11 | 2.66 | 2.90 | 2.75 | 3.3 | 0.006 | 1.35 | 0.0 | 0.10 | 19.32 | 0.00 | 1.729 | 6.79 | 2.68 | 3.5 | 96.5 | 0.0 | -0.92 | 0.37 | 0.33 | 0.08 | 2.9 | 0.004 | 0.69 | 0.0 | 0.10 | 18.13 | 0.00 | 1.765 | 4.75 | 1.92 | 3.1 | 96.9 | 0.0 | 0.14 | 1.43 | 0.71 | 0.88 | 3.93 | 81543 | 5280 | 24 | 0 | 60 | 0 | 39601 | logfile |
✔ | 8K1L | 36794 | 2024-02-14 | 2023-07-11 | 3.44 | 3.80 | 3.50 | 3.7 | 0.004 | 1.17 | 0.0 | 0.05 | 16.42 | 0.01 | 2.067 | 19.32 | 0.37 | 5.9 | 94.1 | 0.0 | -1.16 | 0.65 | 0.85 | 1.91 | 3.7 | 0.003 | 0.84 | 0.0 | 0.04 | 16.84 | 0.00 | 2.184 | 12.11 | 3.39 | 5.4 | 94.5 | 0.2 | -0.01 | 0.34 | 0.67 | 0.86 | 1.81 | 10026 | 1271 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 8PPT | 17815 | 2024-02-17 | 2023-07-10 | 2.9 | 3.15 | 3.01 | 3.2 | 0.003 | 0.55 | 0.0 | 0.04 | 19.22 | 0.00 | 1.950 | 6.05 | 2.82 | 3.8 | 96.2 | 0.0 | -0.19 | 0.71 | 0.84 | 2.71 | 3.2 | 0.003 | 0.56 | 0.0 | 0.04 | 19.50 | 0.00 | 1.949 | 6.10 | 2.62 | 3.8 | 96.2 | 0.0 | 0.29 | 0.33 | 0.71 | 0.85 | 2.61 | 19620 | 2376 | 9 | 34 | 6 | 0 | 0 | logfile |
✔ | 8PQ2 | 17819 | 2024-02-13 | 2023-07-10 | 3.85 | 4.01 | 3.65 | 3.9 | 0.002 | 0.51 | 0.0 | 0.04 | 10.37 | 0.00 | 2.133 | 5.53 | 2.73 | 8.3 | 91.7 | 0.0 | -2.04 | 0.60 | 0.79 | 3.14 | 3.9 | 0.003 | 0.56 | 0.0 | 0.04 | 13.07 | 0.00 | 2.022 | 8.38 | 3.33 | 11.2 | 88.8 | 0.0 | -2.27 | 0.56 | 0.60 | 0.80 | 3.19 | 5956 | 390 | 4 | 0 | 1 | 0 | 2891 | logfile |
✔ | 8TFB | 41228 | 2024-02-20 | 2023-07-09 | 2.99 | 3.29 | 3.14 | 3.3 | 0.003 | 0.47 | 2.0 | 0.04 | 13.18 | 0.00 | 2.087 | 4.51 | 0.00 | 1.6 | 98.4 | 0.0 | 1.54 | 0.56 | 0.66 | 3.91 | 3.3 | 0.002 | 0.47 | 0.0 | 0.04 | 15.72 | 0.00 | 2.078 | 4.45 | 1.36 | 1.5 | 98.5 | 0.0 | 1.38 | 0.49 | 0.78 | 0.87 | 3.56 | 42056 | 5316 | 24 | 0 | 12 | 0 | 0 | logfile |
✔ | 8K0B | 36759 | 2024-02-13 | 2023-07-08 | 3.56 | 2.51 | 3.58 | 1.9 | 0.004 | 0.86 | 2.0 | 0.05 | 17.34 | 0.00 | 2.195 | 14.96 | 1.28 | 8.0 | 92.0 | 0.0 | -0.63 | 0.53 | 0.53 | 0.79 | 2.0 | 0.004 | 0.78 | 0.0 | 0.04 | 17.55 | 0.00 | 2.156 | 15.66 | 6.39 | 8.3 | 91.7 | 0.0 | -0.41 | 0.44 | 0.54 | 0.54 | 0.38 | 5689 | 689 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8PPo | 17806 | 2024-02-13 | 2023-07-07 | 2.0 | 2.30 | 1.95 | 2.2 | 0.008 | 1.20 | 1.0 | 0.07 | 13.41 | 0.01 | 2.625 | 0.29 | 0.00 | 6.7 | 93.3 | 0.0 | 0.71 | 0.58 | 0.84 | 6.50 | 2.2 | 0.004 | 0.53 | 0.0 | 0.06 | 14.00 | 0.00 | 2.289 | 0.29 | 0.52 | 0.0 | 100.0 | 0.0 | 1.18 | 0.37 | 0.50 | 0.88 | 5.44 | 1696 | 240 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 8TF4 | 41219 | 2024-02-17 | 2023-07-07 | 2.86 | 3.17 | 2.99 | 3.2 | 0.012 | 1.77 | 0.0 | 0.09 | 15.62 | 0.01 | 2.302 | 5.28 | 0.58 | 2.0 | 98.0 | 0.0 | -0.60 | 0.57 | 0.85 | 4.97 | 3.2 | 0.002 | 0.51 | 0.0 | 0.04 | 16.34 | 0.00 | 2.181 | 5.18 | 0.48 | 1.0 | 99.0 | 0.0 | 2.10 | 0.94 | 0.64 | 0.87 | 4.27 | 19888 | 2408 | 8 | 0 | 20 | 0 | 0 | logfile |
✔ | 8TF2 | 41217 | 2024-02-17 | 2023-07-07 | 2.57 | 2.79 | 2.66 | 2.8 | 0.012 | 1.75 | 3.0 | 0.09 | 15.41 | 0.01 | 2.484 | 4.43 | 0.38 | 1.5 | 98.5 | 0.0 | 0.29 | 0.57 | 0.85 | 5.52 | 2.9 | 0.002 | 0.49 | 0.0 | 0.04 | 16.22 | 0.00 | 2.228 | 5.45 | 1.97 | 1.0 | 99.0 | 0.0 | 2.00 | 1.72 | 0.65 | 0.89 | 4.52 | 19856 | 2408 | 8 | 0 | 24 | 0 | 0 | logfile |
✔ | 8TF3 | 41218 | 2024-02-17 | 2023-07-07 | 2.94 | 3.18 | 2.97 | 3.3 | 0.012 | 1.80 | 4.0 | 0.09 | 14.59 | 0.02 | 2.356 | 4.45 | 0.00 | 2.7 | 97.3 | 0.0 | -0.94 | 0.57 | 0.83 | 5.13 | 3.3 | 0.003 | 0.57 | 0.0 | 0.04 | 15.90 | 0.00 | 2.202 | 5.85 | 1.39 | 1.5 | 98.5 | 0.0 | 1.83 | 0.47 | 0.65 | 0.87 | 3.64 | 19888 | 2408 | 8 | 0 | 20 | 0 | 0 | logfile |
✔ | 8TER | 41198 | 2024-02-13 | 2023-07-06 | 2.59 | 2.80 | 2.25 | 2.8 | 0.007 | 0.89 | 0.0 | 0.05 | 18.43 | 0.01 | 2.289 | 10.67 | 0.00 | 6.1 | 93.9 | 0.0 | -4.34 | 0.66 | 0.90 | 5.78 | 2.8 | 0.009 | 0.75 | 0.0 | 0.05 | 20.13 | 0.00 | 2.173 | 3.05 | 6.21 | 5.8 | 94.2 | 0.0 | -3.89 | 0.85 | 0.67 | 0.91 | 6.78 | 5780 | 700 | 40 | 0 | 0 | 240 | 0 | logfile |
✔ | 8JZZ | 36755 | 2024-02-14 | 2023-07-06 | 3.31 | 3.67 | 3.40 | 3.7 | 0.002 | 0.54 | 0.0 | 0.04 | 13.17 | 0.00 | 2.205 | 9.02 | 0.24 | 4.4 | 95.6 | 0.0 | -0.38 | 0.61 | 0.70 | 2.06 | 3.7 | 0.002 | 0.55 | 0.0 | 0.04 | 15.11 | 0.00 | 2.141 | 9.14 | 2.28 | 4.1 | 95.9 | 0.0 | -0.16 | 0.97 | 0.59 | 0.70 | 2.07 | 8680 | 1198 | 6 | 0 | 0 | 0 | 0 | logfile |