Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WoU	32659	2024-02-21	2022-01-22	3.47	2.44	—	2.1	0.003	0.57	0.0	0.04	9.57	0.01	2.208	8.19	5.49	8.0	92.0	0.0	-4.25	0.67	0.67	2.06	2.2	0.007	0.87	2.0	0.05	13.84	0.01	1.975	13.23	4.00	10.0	90.0	0.0	-2.49	1.27	0.70	0.75	2.19	31397	4029	10	0	23	0	0	logfile
✔	7WoS	32657	2024-02-21	2022-01-22	3.91	3.20	—	3.1	0.003	0.52	1.0	0.04	9.08	0.01	2.210	8.37	5.30	7.0	92.9	0.1	-3.97	0.73	0.71	1.37	3.5	0.003	0.77	0.0	0.05	13.55	0.00	2.055	14.50	3.88	9.5	90.5	0.0	-2.04	1.38	0.75	0.74	1.70	31411	4034	10	0	21	0	0	logfile
✔	7Woo	32653	2024-02-16	2022-01-22	3.71	4.08	—	3.9	0.010	1.69	139.0	0.10	15.86	0.01	1.041	23.12	4.33	9.3	88.5	2.2	-3.11	0.47	0.44	0.31	3.9	0.005	0.90	2.0	0.04	16.67	0.01	1.952	19.85	3.59	9.5	90.2	0.4	-0.73	1.62	0.48	0.45	0.18	66949	8644	12	0	0	0	0	logfile
✔	7WoQ	32655	2024-02-19	2022-01-22	3.47	2.83	—	3.2	0.003	0.56	0.0	0.05	9.33	0.02	2.216	9.29	5.15	7.8	91.9	0.3	-4.15	0.75	0.74	2.14	3.1	0.005	0.88	3.0	0.05	13.78	0.01	1.991	13.40	4.34	9.7	90.2	0.0	-2.03	1.31	0.78	0.79	2.24	26221	3328	7	0	28	0	0	logfile
✔	7WoR	32656	2024-02-21	2022-01-22	3.7	2.87	—	3.2	0.003	0.53	0.0	0.05	9.28	0.01	2.216	8.02	5.34	7.7	92.2	0.1	-4.04	0.72	0.71	1.83	3.1	0.003	0.71	0.0	0.05	13.14	0.00	2.074	11.95	3.92	9.3	90.7	0.0	-2.38	0.76	0.74	0.73	1.75	29670	3799	9	0	23	0	0	logfile
✔	7To4	26029	2024-02-20	2022-01-22	3.4	2.97	—	2.1	0.015	1.90	20.0	0.13	16.22	0.01	2.009	5.62	2.60	7.2	92.0	0.8	-2.22	0.85	0.82	2.79	2.1	0.006	0.97	2.0	0.05	15.02	0.01	2.062	13.64	3.83	5.8	94.2	0.0	-0.47	0.70	0.86	0.83	2.40	27672	3350	35	0	101	0	0	logfile
✔	7TNZ	26024	2024-02-13	2022-01-22	3.54	3.70	—	3.7	0.011	1.17	0.0	0.07	15.33	0.00	2.258	8.16	0.66	6.8	92.8	0.4	-2.66	0.71	0.81	2.02	3.7	0.004	1.03	1.0	0.04	17.41	0.00	2.228	11.98	3.78	7.1	92.9	0.0	-0.52	1.19	0.71	0.80	1.48	5986	680	4	23	2	0	0	logfile
✔	7WP5	32669	2024-02-13	2022-01-22	3.9	4.08	—	4.0	0.005	1.03	0.0	0.06	13.95	0.01	2.278	4.75	0.56	9.1	90.7	0.2	-4.27	0.59	0.74	2.00	4.0	0.004	0.76	0.0	0.05	16.33	0.00	2.158	13.64	5.32	11.0	88.8	0.2	-2.98	0.62	0.60	0.74	1.28	3340	425	4	0	2	0	0	logfile
✔	7WoP	32654	2024-02-13	2022-01-22	3.51	2.51	—	3.4	0.002	0.54	0.0	0.04	10.83	0.00	2.203	10.97	9.21	11.4	88.6	0.0	-4.81	0.64	0.66	1.96	3.4	0.004	0.76	0.0	0.05	15.06	0.00	2.071	19.23	6.32	17.6	82.4	0.0	-3.81	1.27	0.65	0.69	2.18	5107	669	3	0	0	0	0	logfile
✔	7WoV	32660	2024-02-22	2022-01-22	3.87	2.62	—	2.1	0.003	0.54	0.0	0.04	9.47	0.01	2.137	8.14	5.98	8.0	91.8	0.2	-4.25	0.67	0.66	1.83	2.1	0.005	0.76	0.0	0.05	13.67	0.00	2.087	15.22	5.48	12.2	87.8	0.0	-2.83	0.77	0.69	0.69	1.74	34884	4505	12	0	18	0	0	logfile
✔	7To3	26028	2024-02-16	2022-01-22	2.74	3.49	2.83	3.3	0.002	0.54	0.0	0.04	12.12	0.00	2.062	3.20	0.00	1.9	98.1	0.0	0.85	0.83	0.85	3.77	3.3	0.003	0.58	0.0	0.04	14.07	0.00	1.087	4.40	0.90	1.7	98.3	0.0	0.84	1.33	0.82	0.85	3.93	14764	1850	6	0	10	0	0	logfile
✔	7To1	26026	2024-02-13	2022-01-22	3.66	3.88	—	3.9	0.012	1.05	0.0	0.06	15.28	0.00	2.314	6.92	0.00	8.3	91.7	0.0	-2.28	0.73	0.81	1.82	3.9	0.003	0.58	0.0	0.04	16.90	0.00	1.538	9.56	2.80	6.2	93.8	0.0	0.06	1.16	0.73	0.79	2.35	5601	635	3	21	2	0	0	logfile
✔	7To2	26027	2024-02-13	2022-01-22	3.2	3.55	—	3.5	0.011	1.13	0.0	0.07	15.50	0.00	2.284	5.58	0.84	5.0	95.0	0.0	-1.96	0.80	0.85	2.46	3.5	0.003	0.53	0.0	0.04	16.99	0.00	2.203	7.52	1.34	4.7	95.3	0.0	0.55	0.38	0.78	0.86	2.44	6052	670	3	30	3	0	0	logfile
✔	7WoA	32646	2024-02-21	2022-01-21	3.25	2.98	—	3.2	0.002	0.45	0.0	0.04	9.46	0.00	2.229	6.56	4.23	3.8	96.2	0.0	-3.46	0.86	0.78	2.52	3.2	0.004	0.67	0.0	0.05	13.98	0.00	2.139	11.13	3.68	7.9	92.1	0.0	-2.07	1.17	0.89	0.85	2.78	31952	4060	10	0	39	0	0	logfile
✔	7QVF	14176	2024-02-13	2022-01-21	3.64	3.54	3.42	4.1	0.012	2.10	22.0	0.12	15.51	0.01	2.525	0.00	0.53	6.0	94.0	0.0	-2.41	0.43	0.77	3.90	3.6	0.007	0.90	0.0	0.06	16.90	0.00	2.078	16.13	3.84	6.8	93.2	0.0	-2.55	3.84	0.39	0.75	3.83	6516	810	6	0	0	0	0	logfile
✔	7QVM	14180	2024-02-14	2022-01-21	3.25	3.83	—	3.6	0.003	0.64	0.0	0.04	12.94	0.00	2.156	11.45	0.00	3.6	96.4	0.0	0.22	0.72	0.78	2.24	3.6	0.003	0.63	0.0	0.04	15.49	0.00	2.150	12.28	2.37	3.6	96.4	0.0	0.46	0.78	0.73	0.81	1.75	8528	1094	6	0	1	0	0	logfile
✔	7WoG	32651	2024-02-13	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.72	0.0	0.04	10.77	0.00	2.076	19.52	0.00	12.4	87.6	0.0	-2.57	0.92	0.54	0.54	—	3362	433	3	0	0	0	0	logfile
✔	7WoB	32647	2024-02-22	2022-01-21	3.25	2.88	—	3.2	0.002	0.47	0.0	0.04	9.46	0.00	2.243	7.02	4.57	5.0	95.0	0.0	-3.68	0.85	0.77	2.45	3.2	0.006	0.73	0.0	0.05	13.95	0.00	2.013	11.77	3.81	10.0	90.0	0.0	-2.22	2.19	0.89	0.86	2.78	35134	4476	12	0	38	0	0	logfile
✔	7QVE	14175	2024-02-25	2022-01-21	3.3	2.47	—	3.1	0.009	0.92	2.0	0.06	13.32	0.00	1.612	10.74	0.76	6.0	93.8	0.2	-0.90	0.76	0.77	2.17	3.0	0.005	0.76	0.0	0.04	17.15	0.00	1.765	13.15	4.05	3.2	96.8	0.0	0.64	1.22	0.79	0.82	2.14	48322	6256	28	0	0	0	0	logfile
✔	7TNJ	26011	2024-02-17	2022-01-21	4.02	3.16	—	3.3	0.005	0.94	0.0	0.05	11.63	0.01	2.246	3.87	0.20	3.6	96.4	0.0	-4.89	0.65	0.72	—	3.1	0.003	0.66	0.0	0.04	13.16	0.00	2.161	10.87	0.10	3.5	96.5	0.0	0.45	1.28	0.66	0.74	—	18810	2402	8	0	4	0	0	logfile

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