Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7FJN	31624	2024-02-20	2021-08-04	3.25	3.88	—	3.3	0.012	1.56	4.0	0.09	12.29	0.02	1.560	6.11	2.63	7.5	92.1	0.4	-1.21	0.77	0.67	1.19	3.3	0.003	0.61	0.0	0.04	13.32	0.00	2.195	7.22	1.02	4.1	95.8	0.1	0.27	1.04	0.85	0.84	2.25	26824	3418	10	0	25	0	0	logfile
✔	7PD4	13330	2024-02-13	2021-08-04	4.9	4.13	—	7.8	0.005	0.87	0.0	0.05	14.59	0.00	2.035	38.59	0.00	11.7	88.3	0.0	-4.80	0.73	0.72	—	7.8	0.005	0.84	0.0	0.05	13.74	0.00	2.064	24.98	0.00	6.5	93.5	0.0	-0.78	1.47	0.73	0.74	—	6676	842	1	0	0	0	0	logfile
✔	7FJQ	31627	2024-02-13	2021-08-04	3.6	3.86	—	3.8	0.019	2.03	44.0	0.17	13.67	0.01	1.980	10.56	6.77	10.2	88.1	1.7	-3.67	0.64	0.75	1.76	3.8	0.004	0.79	0.0	0.05	14.75	0.01	2.210	10.85	3.73	9.5	90.0	0.4	-1.48	0.69	0.64	0.80	0.63	7086	973	1	0	1	0	0	logfile
✘	7PD3	13329	2024-02-13	2021-08-04	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	108076	9276	76	1522	125	0	0	logfile
✔	7FJM	31623	2024-02-13	2021-08-04	3.3	3.57	—	3.5	0.014	1.57	16.0	0.12	11.98	0.01	2.194	5.81	3.44	9.2	90.3	0.5	-4.28	0.65	0.76	2.17	3.5	0.003	0.73	0.0	0.04	14.00	0.01	2.186	7.52	3.71	8.3	91.4	0.3	-1.42	1.68	0.66	0.82	1.49	7086	973	1	0	0	0	0	logfile
✔	7FJi	31621	2024-02-23	2021-08-04	3.6	3.85	—	3.5	0.010	1.34	30.0	0.10	14.53	0.01	1.362	13.24	3.59	4.5	95.3	0.2	-1.23	0.81	0.74	1.61	3.5	0.005	0.77	0.0	0.04	16.81	0.00	2.143	15.17	3.15	5.1	94.8	0.1	-0.26	1.85	0.85	0.83	1.74	39536	4863	26	43	8	0	0	logfile
✔	7FJJ	31622	2024-02-23	2021-08-04	3.6	3.87	—	3.4	0.012	1.65	80.0	0.13	16.48	0.01	1.789	17.52	9.73	5.1	94.3	0.5	-0.42	0.81	0.72	1.44	3.5	0.005	0.80	0.0	0.04	17.24	0.00	2.050	15.70	3.89	5.7	94.3	0.1	-0.48	1.53	0.86	0.82	1.80	39474	4847	26	48	9	0	0	logfile
✔	7FJo	31625	2024-02-20	2021-08-04	3.34	3.72	—	3.5	0.012	1.56	4.0	0.09	12.54	0.02	1.277	9.35	3.26	7.2	92.4	0.4	-1.06	0.55	0.36	0.19	3.5	0.008	0.90	0.0	0.05	14.86	0.00	2.029	14.34	2.02	6.2	93.7	0.1	-0.68	1.94	0.78	0.82	1.95	28547	3640	12	0	25	0	0	logfile
✔	7RPX	24625	2024-02-15	2021-08-04	4.2	3.22	—	4.2	0.003	0.56	0.0	0.04	15.95	0.00	1.655	21.85	0.86	8.9	90.8	0.3	-2.44	0.71	0.61	—	4.1	0.003	0.74	0.0	0.05	16.74	0.00	2.082	15.93	0.00	9.9	89.8	0.2	-2.48	2.75	0.71	0.61	—	11754	1327	8	62	3	0	0	logfile
✔	7RPW	24624	2024-02-15	2021-08-04	4.38	4.64	—	4.4	0.003	0.57	0.0	0.04	19.29	0.00	1.756	18.05	9.97	11.3	88.6	0.1	-2.82	0.77	0.68	—	4.4	0.004	0.70	0.0	0.05	18.85	0.00	1.078	20.80	0.00	12.6	87.4	0.1	-3.21	3.74	0.77	0.68	—	10594	1179	10	62	5	0	0	logfile
✔	7FJP	31626	2024-02-13	2021-08-04	3.0	3.19	—	3.2	0.006	1.14	1.0	0.07	10.95	0.01	1.270	7.70	0.80	7.0	92.2	0.7	-4.60	0.71	0.81	3.22	3.1	0.003	0.75	0.0	0.04	14.42	0.00	2.158	6.87	2.55	6.1	93.7	0.2	-0.45	0.64	0.69	0.83	2.56	7239	983	1	0	4	0	0	logfile
✔	7PD8	13331	2024-02-13	2021-08-04	4.2	4.36	—	4.2	0.009	1.08	0.0	0.05	15.65	0.01	2.003	34.24	1.09	11.2	88.8	0.0	-4.82	0.59	0.78	—	4.2	0.004	0.76	0.0	0.04	14.42	0.00	2.122	17.15	0.00	5.8	94.2	0.0	-0.52	1.16	0.57	0.75	—	7642	970	2	0	0	0	0	logfile
✔	7FJD	31618	2024-02-14	2021-08-03	3.2	2.83	—	3.2	0.011	1.24	0.0	0.07	11.94	0.01	2.229	3.02	0.87	8.9	90.9	0.2	-3.57	0.65	0.82	3.85	3.2	0.004	0.66	0.0	0.04	15.43	0.00	2.221	4.23	3.37	7.5	92.5	0.0	-0.53	2.30	0.64	0.82	2.44	8352	1058	10	0	2	0	0	logfile
✔	7FJE	31619	2024-02-14	2021-08-03	3.0	2.96	—	3.2	0.010	1.19	0.0	0.07	11.62	0.01	2.287	2.42	0.97	7.9	91.8	0.3	-3.03	0.76	0.84	4.04	3.2	0.003	0.66	0.0	0.04	15.67	0.00	2.224	4.42	3.56	6.5	93.4	0.1	0.35	1.31	0.75	0.85	2.80	8338	1058	9	0	1	0	0	logfile
✔	7FJF	31620	2024-02-14	2021-08-03	3.1	2.99	—	3.2	0.010	1.34	0.0	0.07	12.22	0.01	2.256	4.88	1.73	8.9	90.8	0.3	-3.59	0.60	0.76	2.76	3.2	0.003	0.64	0.0	0.04	15.32	0.00	2.132	5.30	2.48	5.3	94.6	0.1	0.40	2.42	0.65	0.83	3.12	8377	1058	10	0	2	0	0	logfile
✔	7RPi	24615	2024-02-14	2021-08-03	2.5	2.74	2.62	2.8	0.016	1.82	2.0	0.11	14.73	0.01	2.170	0.93	0.12	2.0	98.0	0.0	-0.69	0.50	0.73	4.35	2.8	0.002	0.60	0.0	0.04	13.38	0.00	2.216	6.08	1.35	1.4	98.6	0.0	2.17	0.53	0.60	0.82	2.91	8526	926	1	0	35	43	0	logfile
✘	7PCQ	13325	2024-02-13	2021-08-03	3.62	4.96	3.71	4.1	0.013	1.55	0.0	0.10	13.62	0.01	2.557	1.30	0.78	2.8	97.2	0.0	1.72	0.91	0.78	1.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7350	911	9	0	4	0	0	logfile
✔	7PCH	13320	2024-02-15	2021-08-03	2.89	3.82	2.93	3.4	0.012	1.54	0.0	0.10	13.62	0.01	2.343	0.97	0.55	3.7	96.3	0.0	1.22	0.89	0.83	3.70	3.4	0.004	0.61	0.0	0.04	14.22	0.00	2.176	5.93	0.36	1.0	99.0	0.0	2.40	1.13	0.92	0.91	3.65	10798	1254	16	0	4	510	0	logfile
✔	7RPJ	24616	2024-02-13	2021-08-03	3.2	3.54	3.29	3.6	0.014	1.72	5.0	0.10	13.32	0.01	2.458	3.51	0.98	4.5	95.4	0.1	-1.66	0.57	0.65	2.39	3.6	0.003	0.65	0.0	0.04	13.69	0.00	2.200	8.46	1.47	3.4	96.6	0.0	1.54	1.36	0.65	0.81	1.92	7926	926	1	0	19	0	0	logfile
✔	7RPH	24614	2024-02-14	2021-08-03	2.5	2.68	2.59	2.7	0.017	1.89	4.0	0.12	15.18	0.01	1.952	2.03	0.61	2.1	97.9	0.0	-0.70	0.53	0.76	4.93	2.7	0.002	0.61	0.0	0.04	14.22	0.00	2.203	5.67	2.21	1.5	98.5	0.0	2.00	1.28	0.66	0.85	2.92	8573	926	1	0	36	86	0	logfile

• ← previous
• Page 342 of 633
• next →