Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7FDE	31541	2024-02-24	2021-07-16	3.8	4.32	—	3.9	0.002	0.52	0.0	0.04	12.57	0.00	1.886	10.22	0.00	6.2	93.8	0.0	-0.28	0.86	0.83	1.17	3.9	0.003	0.66	0.0	0.04	15.07	0.00	2.110	10.76	1.56	4.9	95.1	0.0	-0.09	1.28	0.87	0.86	1.20	39557	5045	16	0	0	0	0	logfile
✘	7RH6	24456	2024-02-21	2021-07-16	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	90627	5901	42	0	60	0	43188	logfile
✔	7FD4	31534	2024-02-23	2021-07-16	2.4	3.11	—	2.9	0.011	1.19	5.0	0.07	11.32	0.01	2.212	5.69	0.41	6.5	93.2	0.3	-3.71	0.69	0.66	3.45	2.9	0.002	0.61	0.0	0.04	13.72	0.00	2.180	6.64	1.04	4.9	95.0	0.0	0.33	0.57	0.75	0.85	2.61	37182	4674	13	0	34	0	0	logfile
✔	7P6K	13230	2024-02-23	2021-07-16	3.8	3.45	3.78	3.2	0.002	0.47	0.0	0.04	11.36	0.00	2.230	9.61	3.89	3.6	96.4	0.0	-0.13	0.73	0.70	1.00	3.2	0.003	0.57	0.0	0.04	14.42	0.00	2.170	15.03	4.03	5.5	94.5	0.0	-0.47	0.63	0.71	0.68	0.94	38106	4650	9	0	0	0	0	logfile
✘	7FD8	31536	2024-02-15	2021-07-16	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12152	1528	4	0	6	0	0	logfile
✔	7FD5	31535	2024-02-23	2021-07-16	2.4	3.12	—	2.9	0.015	1.23	4.0	0.07	11.59	0.01	2.203	5.63	0.51	6.3	93.5	0.2	-3.77	0.71	0.72	3.86	2.9	0.002	0.61	0.0	0.04	13.87	0.00	2.166	6.75	1.27	4.4	95.5	0.0	0.27	0.99	0.74	0.85	2.68	37179	4674	13	0	34	0	0	logfile
✔	7RH9	24458	2024-02-16	2021-07-16	2.61	2.09	—	2.5	0.003	0.57	0.0	0.04	13.27	0.01	2.214	5.79	0.00	1.3	98.7	0.0	1.30	0.64	0.84	4.07	2.5	0.004	0.55	0.0	0.04	15.60	0.00	2.189	9.07	1.24	1.6	98.4	0.0	2.40	0.91	0.64	0.86	3.98	14680	1792	4	0	0	0	0	logfile
✘	7RH5	24455	2024-02-21	2021-07-16	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	93342	6072	44	0	66	0	44380	logfile
✔	7FDH	31543	2024-02-13	2021-07-16	3.72	3.93	—	3.8	0.004	0.73	0.0	0.05	14.49	0.00	2.145	13.20	0.29	3.8	96.2	0.0	-2.91	0.72	0.81	2.27	3.8	0.003	0.71	0.0	0.04	15.93	0.00	2.194	12.66	2.73	2.9	97.1	0.0	1.03	0.64	0.71	0.80	1.78	6488	791	4	0	5	0	0	logfile
✘	7FDi	31544	2024-02-13	2021-07-16	3.12	3.24	—	3.2	0.005	0.64	0.0	0.05	15.54	0.00	2.109	15.52	0.15	3.7	96.3	0.0	-0.19	0.61	0.78	3.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6403	788	4	0	5	0	0	logfile
✔	7FDK	31546	2024-02-13	2021-07-16	3.69	3.82	—	3.8	0.008	0.88	0.0	0.05	15.52	0.01	2.080	18.21	0.29	13.2	86.7	0.1	-4.54	0.61	0.79	1.60	3.8	0.003	0.69	0.0	0.04	16.53	0.00	2.151	12.96	2.03	7.5	92.4	0.1	-0.82	1.23	0.60	0.76	1.33	6449	791	4	0	3	0	0	logfile
✔	7FDB	31539	2024-02-15	2021-07-16	4.8	5.04	4.73	8.8	0.003	0.57	0.0	0.04	13.84	0.00	1.761	12.61	0.00	7.3	92.6	0.0	-0.78	0.66	0.32	—	4.7	0.004	0.86	0.0	0.05	13.92	0.01	2.005	28.55	0.00	6.4	93.6	0.0	-1.56	2.61	0.77	0.66	—	64497	8295	31	0	0	0	0	logfile
✔	7FDA	31538	2024-02-15	2021-07-16	4.2	3.94	—	3.5	0.003	0.56	0.0	0.04	11.99	0.00	1.871	8.71	0.00	5.8	94.2	0.0	-0.86	0.72	0.63	—	3.1	0.005	0.78	0.0	0.04	13.20	0.00	2.039	17.56	0.03	5.5	94.5	0.0	-0.86	1.81	0.76	0.77	—	64497	8295	31	0	0	0	0	logfile
✔	7P6B	13224	2024-02-13	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.003	0.62	0.0	0.05	17.14	0.00	2.160	6.37	1.51	4.5	95.5	0.0	-2.28	0.88	0.49	0.88	6.71	4060	540	5	0	0	0	0	logfile
✔	7P6D	13226	2024-02-13	2021-07-15	3.3	3.43	3.17	3.5	0.003	0.66	0.0	0.05	11.41	0.00	2.575	2.25	0.00	2.7	97.3	0.0	-2.54	0.55	0.77	3.72	3.5	0.006	0.73	0.0	0.05	13.80	0.00	2.088	4.96	4.65	11.7	88.3	0.0	-3.17	2.42	0.47	0.83	4.41	4340	575	5	0	0	0	0	logfile
✔	7P66	13219	2024-02-13	2021-07-15	3.0	3.09	2.70	3.2	0.004	0.66	0.0	0.06	12.13	0.00	2.388	4.21	0.00	3.8	96.2	0.0	-2.50	0.48	0.82	4.06	3.2	0.005	0.61	0.0	0.05	15.15	0.00	2.180	6.01	3.01	5.3	94.7	0.0	-2.91	1.34	0.47	0.84	4.52	4060	540	5	0	0	0	0	logfile
✔	7FCV	31532	2024-02-16	2021-07-15	2.9	3.53	—	3.2	0.008	1.04	0.0	0.06	12.12	0.01	2.271	4.38	0.00	8.4	91.6	0.0	-3.29	0.62	0.81	3.28	3.2	0.003	0.66	0.0	0.04	13.81	0.00	2.251	8.91	1.41	6.3	93.7	0.0	0.60	1.67	0.61	0.82	2.18	15143	1848	8	0	7	0	0	logfile
✘	7RGQ	24454	2024-02-14	2021-07-15	3.9	3.65	—	3.7	0.013	1.98	9.0	0.09	19.50	0.01	2.357	2.12	2.74	6.9	92.4	0.7	-1.98	0.56	0.81	3.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	59832	3848	16	0	40	0	29544	logfile
✔	7P5V	13202	2024-02-24	2021-07-15	3.06	2.83	2.99	2.9	0.004	0.51	0.0	0.04	11.64	0.00	2.106	9.09	3.53	3.4	96.6	0.0	-0.53	0.75	0.73	1.90	2.8	0.002	0.54	0.0	0.04	14.60	0.00	2.134	9.65	2.60	3.5	96.5	0.0	-0.13	1.45	0.77	0.77	1.75	41274	5034	12	0	0	0	0	logfile
✔	7P61	13214	2024-02-23	2021-07-15	3.2	3.01	—	3.1	0.004	0.82	0.0	1.47	15.22	0.01	2.156	7.19	0.29	3.9	96.1	0.0	-1.15	0.88	0.87	2.37	3.1	0.012	2.23	0.0	0.44	15.71	0.00	1.956	11.31	2.28	4.2	95.8	0.0	0.51	1.15	0.90	0.89	2.61	36690	4681	20	0	15	0	0	logfile

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