Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8UNF	42399	2024-02-17	2023-10-18	3.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17810	2147	14	44	8	0	0	logfile
✔	8UMX	42387	2024-02-13	2023-10-18	4.0	5.63	3.86	4.0	0.003	0.77	0.0	0.04	17.12	0.00	2.173	17.66	0.50	5.0	94.9	0.1	-0.01	0.52	0.81	—	4.0	0.002	0.73	0.0	0.04	17.36	0.00	2.157	16.08	2.39	4.1	95.7	0.1	0.58	1.74	0.54	0.85	—	7166	906	6	0	0	0	0	logfile
✔	8UMD	42376	2024-02-13	2023-10-17	3.6	4.61	3.60	3.7	0.003	0.72	0.0	0.04	16.78	0.01	2.098	13.27	0.50	4.9	94.8	0.3	0.54	0.50	0.80	0.85	3.7	0.003	0.76	0.0	0.04	17.13	0.00	2.101	16.96	3.26	4.9	94.8	0.3	0.75	1.76	0.51	0.85	0.71	7201	911	6	0	0	0	0	logfile
✔	8ULG	42358	2024-02-16	2023-10-16	3.2	4.33	3.21	3.6	0.003	0.56	0.0	0.04	18.17	0.00	2.079	5.55	0.06	3.7	96.3	0.1	1.30	0.93	0.87	2.23	3.6	0.002	0.55	0.0	0.04	18.03	0.00	2.066	7.47	1.13	3.5	96.5	0.0	1.54	1.42	0.94	0.89	1.87	14635	1789	6	0	8	0	0	logfile
✔	8WRL	37779	2024-02-13	2023-10-15	3.36	3.59	3.33	3.7	0.004	0.70	0.0	0.05	19.51	0.00	1.771	9.25	0.58	4.5	95.5	0.0	-0.27	0.54	0.77	1.66	3.7	0.003	0.51	0.0	0.04	17.32	0.00	2.222	8.85	4.18	3.7	96.3	0.0	0.43	0.34	0.52	0.77	1.34	6472	790	4	0	5	0	0	logfile
✔	8WRo	37784	2024-02-21	2023-10-15	3.9	4.30	3.87	4.0	0.004	0.79	0.0	0.05	18.35	0.01	2.237	8.70	0.33	8.4	91.4	0.1	-2.06	0.79	0.69	0.35	4.0	0.003	0.68	0.0	0.04	18.45	0.00	2.129	16.33	2.93	6.8	93.1	0.1	-1.46	1.88	0.83	0.81	1.04	29807	3780	4	0	0	0	0	logfile
✔	8WRM	37781	2024-02-21	2023-10-15	4.34	4.58	4.54	4.2	0.004	0.89	0.0	0.05	14.47	0.01	2.196	7.52	0.03	8.4	91.5	0.1	-2.50	0.80	0.76	—	4.2	0.003	0.66	0.0	0.04	14.26	0.00	2.093	17.10	0.12	9.4	90.5	0.1	-1.48	0.71	0.81	0.78	—	29931	3793	4	0	0	0	0	logfile
✔	8WRH	37776	2024-02-13	2023-10-14	3.08	3.33	3.08	3.4	0.004	0.68	1.0	0.05	18.70	0.00	2.151	9.11	0.00	4.8	94.8	0.4	0.28	0.61	0.83	2.27	3.4	0.003	0.52	0.0	0.04	17.71	0.00	2.098	7.68	1.30	5.0	95.0	0.0	0.95	0.88	0.59	0.82	1.94	6459	790	3	0	4	0	0	logfile
✔	8WRB	37771	2024-02-14	2023-10-13	2.91	3.14	3.03	3.2	0.002	0.49	0.0	0.04	9.42	0.00	2.218	4.00	1.06	1.3	98.7	0.0	1.02	0.57	0.80	3.66	3.2	0.003	0.51	0.0	0.04	13.39	0.00	2.063	6.52	3.27	1.7	98.3	0.0	1.85	1.16	0.57	0.81	2.90	8842	1135	6	0	2	0	0	logfile
✔	8WQR	37752	2024-02-14	2023-10-12	3.08	4.11	3.07	3.5	0.003	0.58	0.0	0.04	12.19	0.00	2.166	13.13	0.00	6.8	93.0	0.2	-2.46	0.81	0.66	1.89	3.5	0.004	0.69	0.0	0.05	14.11	0.00	2.144	15.84	2.60	8.4	91.4	0.1	-2.82	0.45	0.82	0.69	1.46	9681	1415	2	0	0	0	0	logfile
✔	8QSM	18636	2024-02-13	2023-10-10	3.69	4.23	3.52	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	4.0	0.003	0.87	0.0	0.04	15.54	0.00	2.035	14.93	3.49	3.5	96.5	0.0	1.79	1.46	0.56	0.78	1.37	3579	464	1	0	0	0	0	logfile
✔	8WPF	37715	2024-02-16	2023-10-10	3.0	3.03	2.90	3.0	0.009	1.14	0.0	0.06	17.29	0.01	2.020	6.69	0.00	2.9	97.1	0.0	-1.58	0.70	0.72	2.81	3.0	0.004	0.62	0.0	0.04	18.98	0.00	1.923	17.54	2.00	3.3	96.7	0.0	-0.02	0.57	0.75	0.82	3.37	16896	1908	11	73	1	0	0	logfile
✔	8WPU	37724	2024-02-17	2023-10-10	3.1	2.87	—	3.2	0.004	0.59	0.0	0.04	16.87	0.00	2.163	9.80	0.00	4.6	95.4	0.0	-0.69	0.76	0.82	2.08	3.2	0.004	0.59	0.0	0.04	16.24	0.00	2.125	10.35	4.84	5.5	94.5	0.0	-0.77	0.32	0.76	0.83	2.23	18794	2455	10	0	22	0	0	logfile
✔	8WPK	37717	2024-02-16	2023-10-10	2.7	2.77	2.62	2.7	0.007	0.88	0.0	0.06	17.19	0.01	2.082	5.65	0.00	2.8	97.2	0.1	-1.51	0.73	0.77	3.55	2.7	0.005	0.62	0.0	0.04	18.81	0.00	1.848	13.28	2.17	2.6	97.4	0.0	0.45	0.96	0.76	0.82	3.83	16854	1909	11	70	1	0	0	logfile
✔	8WPG	37716	2024-02-15	2023-10-10	2.7	2.92	—	3.0	0.004	0.60	0.0	0.04	16.88	0.00	2.163	9.08	0.08	4.2	95.8	0.0	-0.13	0.64	0.80	3.33	2.9	0.004	0.58	0.0	0.04	16.82	0.00	2.156	8.41	3.82	4.6	95.4	0.0	-0.08	0.27	0.65	0.81	3.25	12443	1608	10	0	21	0	0	logfile
✔	8QSN	18637	2024-02-13	2023-10-10	3.54	4.23	3.52	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	4.0	0.003	0.87	0.0	0.04	15.50	0.00	2.062	16.31	2.68	3.5	96.5	0.0	1.78	1.45	0.56	0.77	1.37	3579	464	1	0	0	0	0	logfile
✔	8QSL	18635	2024-02-14	2023-10-10	2.81	3.65	2.98	3.5	0.004	0.67	0.0	0.04	15.58	0.00	1.968	13.05	0.12	8.7	91.3	0.0	1.51	0.61	0.78	1.49	3.5	0.004	0.91	0.0	0.05	15.65	0.00	2.186	12.59	3.17	7.1	92.9	0.0	1.06	1.17	0.58	0.77	1.09	8506	1046	4	0	16	0	0	logfile
✔	8QSK	18634	2024-02-14	2023-10-10	3.3	3.77	3.34	3.6	0.003	0.63	0.0	0.04	12.96	0.01	2.235	7.41	1.59	6.9	92.9	0.2	1.79	0.77	0.75	0.74	3.6	0.003	0.62	0.0	0.04	14.51	0.00	2.185	7.87	3.41	7.2	92.8	0.0	2.18	0.86	0.79	0.79	1.62	8506	1046	4	0	16	0	0	logfile
✔	8WPE	37714	2024-02-16	2023-10-10	2.7	2.83	2.70	2.8	0.007	0.98	2.0	0.06	17.15	0.01	2.147	4.40	0.00	2.9	97.0	0.1	-1.50	0.64	0.64	2.96	2.8	0.004	0.62	0.0	0.04	18.89	0.00	1.950	14.48	2.24	3.1	96.7	0.3	0.34	1.94	0.72	0.78	3.59	16745	1898	11	69	1	0	0	logfile
✔	8WPP	37722	2024-02-16	2023-10-10	3.1	3.23	3.06	3.2	0.005	0.84	0.0	0.05	17.00	0.01	2.245	5.50	0.06	3.0	97.0	0.0	-1.85	0.70	0.74	2.73	3.2	0.003	0.60	1.0	0.04	18.31	0.00	2.171	14.18	1.77	3.4	96.6	0.0	0.16	0.51	0.72	0.82	2.82	16826	1909	9	69	0	0	0	logfile

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